Literature DB >> 26415208

Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks.

Su-Ping Deng, Lin Zhu, De-Shuang Huang.   

Abstract

Cervical cancer is the third most common malignancy in women worldwide. It remains a leading cause of cancer-related death for women in developing countries. In order to contribute to the treatment of the cervical cancer, in our work, we try to find a few key genes resulting in the cervical cancer. Employing functions of several bioinformatics tools, we selected 143 differentially expressed genes (DEGs) associated with the cervical cancer. The results of bioinformatics analysis show that these DEGs play important roles in the development of cervical cancer. Through comparing two differential co-expression networks (DCNs) at two different states, we found a common sub-network and two differential sub-networks as well as some hub genes in three sub-networks. Moreover, some of the hub genes have been reported to be related to the cervical cancer. Those hub genes were analyzed from Gene Ontology function enrichment, pathway enrichment and protein binding three aspects. The results can help us understand the development of the cervical cancer and guide further experiments about the cervical cancer.

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Year:  2015        PMID: 26415208     DOI: 10.1109/TCBB.2015.2476790

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  31 in total

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2.  Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network.

Authors:  Xue Jiang; Han Zhang; Xiongwen Quan
Journal:  Biomed Res Int       Date:  2016-11-30       Impact factor: 3.411

3.  Combining agent based-models and virtual screening techniques to predict the best citrus-derived vaccine adjuvants against human papilloma virus.

Authors:  Marzio Pennisi; Giulia Russo; Silvia Ravalli; Francesco Pappalardo
Journal:  BMC Bioinformatics       Date:  2017-12-28       Impact factor: 3.169

4.  Robust Significance Analysis of Microarrays by Minimum β-Divergence Method.

Authors:  Md Shahjaman; Nishith Kumar; Md Manir Hossain Mollah; Md Shakil Ahmed; Anjuman Ara Begum; S M Shahinul Islam; Md Nurul Haque Mollah
Journal:  Biomed Res Int       Date:  2017-07-27       Impact factor: 3.411

5.  Genomic expression differences between cutaneous cells from red hair color individuals and black hair color individuals based on bioinformatic analysis.

Authors:  Joan Anton Puig-Butille; Pol Gimenez-Xavier; Alessia Visconti; Jérémie Nsengimana; Francisco Garcia-García; Gemma Tell-Marti; Maria José Escamez; Julia Newton-Bishop; Veronique Bataille; Marcela Del Río; Joaquín Dopazo; Mario Falchi; Susana Puig
Journal:  Oncotarget       Date:  2017-02-14

6.  Tumor gene expression data classification via sample expansion-based deep learning.

Authors:  Jian Liu; Xuesong Wang; Yuhu Cheng; Lin Zhang
Journal:  Oncotarget       Date:  2017-11-30

7.  Integrating Imaging Genomic Data in the Quest for Biomarkers of Schizophrenia Disease.

Authors:  Vince D Calhoun
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2017-09-04       Impact factor: 3.710

8.  In silico-driven analysis of the Glossina morsitans morsitans antennae transcriptome in response to repellent or attractant compounds.

Authors:  Consolata Gakii; Billiah Kemunto Bwana; Grace Gathoni Mugambi; Esther Mukoya; Paul O Mireji; Richard Rimiru
Journal:  PeerJ       Date:  2021-07-01       Impact factor: 2.984

9.  Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network.

Authors:  Tiejun Zhang; Xiaojuan Wang; Zhenyu Yue
Journal:  Oncotarget       Date:  2017-08-24

10.  Longitudinal Analysis of Gene Expression Changes During Cervical Carcinogenesis Reveals Potential Therapeutic Targets.

Authors:  Lijun Yu; Meiyan Wei; Fengyan Li
Journal:  Evol Bioinform Online       Date:  2020-05-18       Impact factor: 1.625

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