| Literature DB >> 26413040 |
Junghan Kim1, Arjan J H Frijns1, Silvia V Nedea1, Anton A van Steenhoven1.
Abstract
The outgassing problem is solved numerically by molecular dynamics. A slit-shaped nanopore consisting of cavity and channel is built with an implicit tabulated wall potential that describes the water-silicon/silica interaction. A flexible three-point water model is used for the simulation. The effects of varying the system temperature, outlet pressure, geometry, and materials of the nanopore on the outgassing rate are investigated. The results show that the temperature plays an important role in the outgassing rate, while the effect of the outlet pressure is negligible as long as it is in the high to medium vacuum range. The geometry of the channel also has an influence on the outgassing rate, but not as much as the surface material. Three different types of silica materials are tested: silicon, silica-cristobalite (hydrophilic material), and silica-quartz (super hydrophilic material). The fastest outgassing rate is found for a silicon nanopore. It is also found that a thin water film is formed on the surface of the silica-quartz nanopore. This material shows hardly any outgassing of water.Entities:
Keywords: Molecular dynamics; Outgassing; Silica nanopore; Water
Year: 2015 PMID: 26413040 PMCID: PMC4572717 DOI: 10.1007/s10404-015-1583-3
Source DB: PubMed Journal: Microfluid Nanofluidics ISSN: 1613-4982 Impact factor: 2.529
Fig. 1Overview of the nanopore and important factors for outgassing. On top, a density/pressure controller is used. The walls are modeled by wall potentials. The simulation system is 5 nm deep in z-direction. A periodic boundary condition is applied in -direction
Fig. 2Flexible three-site water model
Nonbonded parameters, geometry, and electrostatic properties of the modified three-point water models
| Parameter and unit | Original TIP3P (Jorgensen et al. | Mod. TIP3P (Neria et al. | Mod. TIP3P Kim | |
|---|---|---|---|---|
|
| 0.31506 | 0.315365 | 0.31506 | |
|
| 0.1521 | 0.1521 | 0.1521 | |
|
| 0 | 0.0449 | 0.0449 | |
|
| 0 | 0.046 | 0.046 | |
|
| 0 | 0.1993 | 0.1993 | |
|
| 0 | 0.084 | 0.084 | |
|
|
|
|
| |
|
|
|
|
| |
|
| 0.09572 | 0.09572 | 0.09572 | |
|
| 104.52 | 104.52 | 104.52 | |
|
| – | 450 | 450 | |
|
| – | 55 | 55 | |
Fig. 3Tabulated wall potentials for silicon–water (top), quartz–water (middle), and cristobalite–water (bottom) (Kim et al. 2014). The lines correspond to the interaction between the wall and a single hydrogen or oxygen atom in the water molecule
Parameter values for the study of the outlet pressure effect
| Set 1: Varying outlet pressure | |
|---|---|
| Outlet pressure (mbar) | 0, 27, 80, 133, 266 |
| Temperature (K) | 773 K |
| Channel width, | 10 |
| Channel length, | 150 |
| Surface material | Silica-cristobalite |
Fig. 4Left influence of outlet pressure on outgassing for a cristobalite nanopore with a channel width of 10 nm, a channel length of 150 nm, and outgassing temperature of 773 K. The first dashed line indicates the time for the water molecules to reach the outlet of the nanopore from their initial condition. The second dashed line indicates the half-life. Right change in average Knudsen number inside the cavity and the channel for an outlet pressure of 0 mbar
Half-lives of water molecules inside a silica-cristobalite nanopore for different outlet pressures
| Outlet pressure | 0 mbar | 27 mbar | 80 mbar | 133 mbar | 266 mbar |
|---|---|---|---|---|---|
| Half-life | 0.71 ns | 0.61 ns | 0.67 ns | 0.71 ns | 0.79 ns |
Parameter values for the study of the outlet temperature effect
| Set 2: Varying temperature | |
|---|---|
| Outlet pressure (mbar) | 0 |
| Temperature (K) | 423, 523, 673, 773 |
| Channel width, | 10 |
| Channel length, | 150 |
| Surface material | Silica-cristobalite |
Fig. 5Influence of baking temperature on outgassing (top) and outgassing rate (bottom). Transparent horizontal red line shows the half-lives of the water molecules. Dashed vertical lines (with numbers) are explained in the text (color figure online)
Half-lives of water molecules inside the nanopore for different temperatures
| Temperature (K) | 423 | 523 | 673 | 773 |
|---|---|---|---|---|
| Half-life (ns) | 2.05 | 1.18 | 0.81 | 0.72 |
Fig. 6Comparison between our molecular dynamics simulation of a pore made of cristobalite ( nm and nm) and diffusion-based continuum models at K
Fig. 7Distribution of the water molecules in the nanopore. Positions 1 and 2 are also shown in Fig. 5. The dashed vertical lines (with numbers) are explained in the text
Parameter values for the study of the geometry effect (channel width)
| Set 3a: Varying channel width | |
|---|---|
| Outlet pressure (mbar) | 0 |
| Temperature (K) | 423, 523, 673, 773 |
| Channel width, | 10, 20 |
| Channel length, | 150 |
| Surface material | Silica-cristobalite |
Fig. 8Influence of channel width on outgassing. Transparent horizontal red line shows the half-lives of the water molecules (color figure online)
Half-lives of water molecules inside the nanopore for different channel widths
| Temperature (K) | 423 | 523 | 673 | 773 | |
|---|---|---|---|---|---|
|
| Half-life | 2.05 ns | 1.18 ns | 0.81 ns | 0.72 ns |
|
| Half-life | 1.63 ns | 0.71 ns | 0.54 ns | 0.46 ns |
| Factor | Half-life (20 nm)/half-life (10 nm) | 0.80 | 0.60 | 0.67 | 0.65 |
Parameter values for the study of the geometry effect (channel length)
| Set 3b: varying channel length | |
|---|---|
| Outlet pressure (mbar) | 0 |
| Temperature (K) | 423, 523, 673, 773 |
| Channel width, | 10 |
| Channel length, | 150, 100 |
| Surface material | Silica-cristobalite |
Fig. 9Influence of channel length on outgassing. Transparent horizontal red line shows the half-lives of the water molecules (color figure online)
Half-lives of water molecules inside the nanopore for different lengths
| Temperature (K) | 423 | 523 | 673 | 773 | |
|---|---|---|---|---|---|
|
| Half-life | 1.02 ns | 0.96 ns | 0.71 ns | 0.61 ns |
|
| Half-life | 2.05 ns | 1.18 ns | 0.81 ns | 0.72 ns |
| Factor | Half-life (120 nm)/half-life (150 nm) | 0.50 | 0.81 | 0.87 | 0.84 |
Parameter values for the study of the material effect
| Set 4: various materials | |
|---|---|
| Outlet pressure (mbar) | 0 |
| Temperature (K) | 423, 523, 673, 773 |
| Channel width, | 10 |
| Channel length, | 150 |
| Surface material | Silica-cristobalite, silica-quartz, silicon |
Fig. 10Influence of nanopore material on outgassing. The transparent horizontal red line shows the half-lives of the water molecules (color figure online)
Half-lives of the water molecules inside the nanopore for different materials
| Temperature (K) | 423 | 523 | 673 | 773 | |
|---|---|---|---|---|---|
| Cristobalite | Half-life | 2.05 ns | 1.18 ns | 0.81 ns | 0.72 ns |
| Silicon | Half-life | 0.89 ns | 0.79 ns | 0.67 ns | 0.62 ns |
| Factor | Half-life ( | 0.43 | 0.67 | 0.82 | 0.86 |