Literature DB >> 26408335

Disorder, oscillatory dynamics and state switching: the role of c-Myc.

Nivedita Rangarajan1, Zach Fox2, Abhyudai Singh3, Prakash Kulkarni4, Govindan Rangarajan5.   

Abstract

In this paper, using the intrinsically disordered oncoprotein Myc as an example, we present a mathematical model to help explain how protein oscillatory dynamics can influence state switching. Earlier studies have demonstrated that, while Myc overexpression can facilitate state switching and transform a normal cell into a cancer phenotype, its downregulation can reverse state-switching. A fundamental aspect of the model is that a Myc threshold determines cell fate in cells expressing p53. We demonstrate that a non-cooperative positive feedback loop coupled with Myc sequestration at multiple binding sites can generate bistable Myc levels. Normal quiescent cells with Myc levels below the threshold can respond to mitogenic signals to activate the cyclin/cdk oscillator for limited cell divisions but the p53/Mdm2 oscillator remains nonfunctional. In response to stress, the p53/Mdm2 oscillator is activated in pulses that are critical to DNA repair. But if stress causes Myc levels to cross the threshold, Myc inactivates the p53/Mdm2 oscillator, abrogates p53 pulses, and pushes the cyclin/cdk oscillator into overdrive sustaining unchecked proliferation seen in cancer. However, if Myc is downregulated, the cyclin/cdk oscillator is inactivated and the p53/Mdm2 oscillator is reset and the cancer phenotype is reversed.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cancer; Intrinsically disordered proteins; Myc; Oscillators; State-switching

Mesh:

Substances:

Year:  2015        PMID: 26408335     DOI: 10.1016/j.jtbi.2015.09.013

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  9 in total

Review 1.  Intrinsically Disordered Proteins: Critical Components of the Wetware.

Authors:  Prakash Kulkarni; Supriyo Bhattacharya; Srisairam Achuthan; Amita Behal; Mohit Kumar Jolly; Sourabh Kotnala; Atish Mohanty; Govindan Rangarajan; Ravi Salgia; Vladimir Uversky
Journal:  Chem Rev       Date:  2022-02-16       Impact factor: 72.087

2.  PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer.

Authors:  Xingcheng Lin; Susmita Roy; Mohit Kumar Jolly; Federico Bocci; Nicholas P Schafer; Min-Yeh Tsai; Yihong Chen; Yanan He; Alexander Grishaev; Keith Weninger; John Orban; Prakash Kulkarni; Govindan Rangarajan; Herbert Levine; José N Onuchic
Journal:  J Mol Biol       Date:  2018-06-05       Impact factor: 5.469

3.  Protein folding, misfolding, and un/non-folding: overview of the SP16 Session at the 20th IUPAB congress, 45th Annual Meeting of SBBf, and 50th Annual Meeting of SBBq.

Authors:  Vladimir N Uversky
Journal:  Biophys Rev       Date:  2021-11-12

Review 4.  Protein conformational dynamics and phenotypic switching.

Authors:  Prakash Kulkarni; Srisairam Achuthan; Supriyo Bhattacharya; Mohit Kumar Jolly; Sourabh Kotnala; Vitor B P Leite; Atish Mohanty; John Orban; Susmita Roy; Govindan Rangarajan; Ravi Salgia
Journal:  Biophys Rev       Date:  2021-11-27

5.  Cancer/testis antigens and obligate participation in multiple hallmarks of cancer: an update.

Authors:  Steven M Mooney; Krithika Rajagopalan; Govindan Rangarajan; Prakash Kulkarni
Journal:  Asian J Androl       Date:  2016 Sep-Oct       Impact factor: 3.285

6.  In silico modeling of phosphorylation dependent and independent c-Myc degradation.

Authors:  Debangana Chakravorty; Krishnendu Banerjee; Tarunendu Mapder; Sudipto Saha
Journal:  BMC Bioinformatics       Date:  2019-05-08       Impact factor: 3.169

Review 7.  Quantitative model of eukaryotic Cdk control through the Forkhead CONTROLLER.

Authors:  Matteo Barberis
Journal:  NPJ Syst Biol Appl       Date:  2021-06-11

8.  Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs.

Authors:  Thierry D G A Mondeel; Oleksandr Ivanov; Hans V Westerhoff; Wolfram Liebermeister; Matteo Barberis
Journal:  NPJ Syst Biol Appl       Date:  2020-04-03

9.  Intrinsically Disordered Proteins: Insights from Poincaré, Waddington, and Lamarck.

Authors:  Prakash Kulkarni
Journal:  Biomolecules       Date:  2020-10-28
  9 in total

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