Literature DB >> 26404148

Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).

Dominick Matteau1, Sébastien Rodrigue2.   

Abstract

Transcription start sites are commonly used to locate promoter elements in bacterial genomes. TSS were previously studied one gene at a time, often through 5'-rapid amplification of cDNA ends (5'-RACE). This technique has now been adapted for high-throughput sequencing and can be used to precisely identify TSS in a genome-wide fashion for practically any bacterium, which greatly contributes to our understanding of gene regulatory networks in microorganisms.

Keywords:  5′-RACE; Genome wide; Next-generation sequencing; Promoter; RNA polymerase holoenzyme; RNA-seq; Rapid amplification of cDNA ends; Transcription; Transcription start site; Transcriptomics

Mesh:

Substances:

Year:  2015        PMID: 26404148     DOI: 10.1007/978-1-4939-2877-4_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

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  4 in total

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