Literature DB >> 26403205

Accurate Langevin approaches to simulate Markovian channel dynamics.

Yandong Huang1, Sten Rüdiger, Jianwei Shuai.   

Abstract

The stochasticity of ion-channels dynamic is significant for physiological processes on neuronal cell membranes. Microscopic simulations of the ion-channel gating with Markov chains can be considered to be an accurate standard. However, such Markovian simulations are computationally demanding for membrane areas of physiologically relevant sizes, which makes the noise-approximating or Langevin equation methods advantageous in many cases. In this review, we discuss the Langevin-like approaches, including the channel-based and simplified subunit-based stochastic differential equations proposed by Fox and Lu, and the effective Langevin approaches in which colored noise is added to deterministic differential equations. In the framework of Fox and Lu's classical models, several variants of numerical algorithms, which have been recently developed to improve accuracy as well as efficiency, are also discussed. Through the comparison of different simulation algorithms of ion-channel noise with the standard Markovian simulation, we aim to reveal the extent to which the existing Langevin-like methods approximate results using Markovian methods. Open questions for future studies are also discussed.

Mesh:

Year:  2015        PMID: 26403205     DOI: 10.1088/1478-3975/12/6/061001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  2 in total

1.  Interpretation of amperometric kinetics of content release during contacts of vesicles with a lipid membrane.

Authors:  Vladimir P Zhdanov
Journal:  Eur Biophys J       Date:  2016-12-10       Impact factor: 1.733

2.  Channel based generating function approach to the stochastic Hodgkin-Huxley neuronal system.

Authors:  Anqi Ling; Yandong Huang; Jianwei Shuai; Yueheng Lan
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

  2 in total

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