Literature DB >> 26396900

Crystal structure of methyl 2-(7-hy-droxy-2-oxo-2H-chromen-4-yl)acetate.

Sammer Yousuf1, Shafqat Hussain2, Khalid Mohammed Khan1, Muhammad Shabeer1, Shahnaz Perveen3.   

Abstract

In the title coumarin derivative, C12H10O5, the fused ring system is almost planar (r.m.s deviation = 0.016 Å). The Car-C-C=O torsion angle of the side chain is -8.4 (2)° In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, generating C(8) chains propagating in the [100] direction. The chains are cross-linked by weak C-H⋯O inter-actions, thereby generating undulating (001) sheets.

Entities:  

Keywords:  chromene; coumarin; crystal structure; ester; hydrogen bonding

Year:  2015        PMID: 26396900      PMCID: PMC4555392          DOI: 10.1107/S2056989015014061

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the applications and biological activities of coumarin derivatives, see: Vukovic et al. (2010 ▸); Basanagouda et al. (2009 ▸); Ahmad et al. (2008 ▸); Abd Elhafez et al. (2003 ▸); Ukhov et al. (2001 ▸); Emmanuel-Giota et al. (2001 ▸). For the crystal structure of a related compound, see: Subramanian et al. (1990 ▸).

Experimental

Crystal data

C12H10O5 M = 234.20 Orthorhombic, a = 13.0780 (12) Å b = 7.2354 (7) Å c = 22.262 (2) Å V = 2106.5 (3) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 273 K 0.62 × 0.35 × 0.07 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▸) T min = 0.932, T max = 0.992 11536 measured reflections 1958 independent reflections 1669 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.104 S = 1.03 1958 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.19 e Å−3

Data collection: SMART (Bruker, 2000 ▸); cell refinement: SAINT (Bruker, 2000 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015014061/hb7469sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014061/hb7469Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014061/hb7469Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015014061/hb7469fig1.tif The mol­ecular structure of (I) with displacement ellipsoids drawn at 30% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015014061/hb7469fig2.tif The crystal packing of the title compound I. Only hydrogen atoms involved in hydrogen bonding are shown. CCDC reference: 1415274 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H10O5Dx = 1.477 Mg m3
Mr = 234.20Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 4477 reflections
a = 13.0780 (12) Åθ = 2.4–28.3°
b = 7.2354 (7) ŵ = 0.12 mm1
c = 22.262 (2) ÅT = 273 K
V = 2106.5 (3) Å3Plate, yellow
Z = 80.62 × 0.35 × 0.07 mm
F(000) = 976
Bruker SMART APEX CCD diffractometer1958 independent reflections
Radiation source: fine-focus sealed tube1669 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω scanθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −15→14
Tmin = 0.932, Tmax = 0.992k = −8→8
11536 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0523P)2 + 0.6817P] where P = (Fo2 + 2Fc2)/3
1958 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.42044 (8)0.1647 (2)0.43882 (5)0.0591 (4)
O20.58807 (7)0.16062 (15)0.44081 (4)0.0403 (3)
O30.94960 (9)0.1761 (2)0.45283 (6)0.0597 (4)
O40.64831 (11)0.23456 (17)0.22259 (5)0.0633 (4)
O50.64257 (9)−0.01095 (16)0.16271 (5)0.0525 (3)
C10.50365 (12)0.0564 (2)0.35141 (6)0.0440 (4)
H1A0.44320.03500.33050.053*
C20.49845 (11)0.1288 (2)0.41145 (7)0.0432 (4)
C30.68119 (11)0.12502 (18)0.41444 (6)0.0338 (3)
C40.76625 (11)0.1663 (2)0.44865 (6)0.0365 (3)
H4A0.75950.21410.48720.044*
C50.86154 (11)0.1347 (2)0.42403 (6)0.0397 (4)
C60.87047 (12)0.0581 (2)0.36677 (7)0.0414 (4)
H6A0.93490.03410.35090.050*
C70.78507 (11)0.01819 (19)0.33383 (6)0.0376 (3)
H7A0.7923−0.03280.29570.045*
C80.68705 (11)0.05257 (18)0.35637 (6)0.0336 (3)
C90.59328 (12)0.01865 (19)0.32448 (6)0.0375 (3)
C100.59598 (12)−0.0602 (2)0.26187 (6)0.0426 (4)
H10A0.6403−0.16770.26170.051*
H10B0.5278−0.10130.25120.051*
C110.63285 (11)0.0736 (2)0.21485 (6)0.0379 (3)
C120.67778 (15)0.1002 (3)0.11240 (8)0.0640 (5)
H12A0.68220.02440.07710.096*
H12B0.74400.15030.12140.096*
H12C0.63040.19930.10540.096*
H30.9369 (17)0.231 (3)0.4915 (11)0.091 (7)*
U11U22U33U12U13U23
O10.0375 (6)0.0935 (10)0.0463 (7)0.0056 (6)0.0053 (5)−0.0091 (6)
O20.0358 (6)0.0533 (6)0.0318 (5)0.0014 (5)0.0024 (4)−0.0043 (4)
O30.0379 (7)0.0923 (10)0.0489 (7)−0.0035 (6)−0.0062 (5)−0.0117 (6)
O40.1002 (11)0.0475 (7)0.0424 (6)−0.0102 (7)−0.0047 (6)−0.0019 (5)
O50.0647 (8)0.0582 (7)0.0345 (6)−0.0042 (6)0.0086 (5)−0.0083 (5)
C10.0401 (9)0.0549 (9)0.0371 (8)−0.0024 (7)−0.0052 (6)−0.0016 (7)
C20.0390 (8)0.0527 (9)0.0379 (8)0.0009 (7)0.0006 (6)0.0009 (7)
C30.0375 (8)0.0340 (7)0.0298 (7)0.0035 (6)0.0027 (6)0.0018 (5)
C40.0420 (9)0.0400 (7)0.0276 (6)0.0000 (6)−0.0010 (6)−0.0025 (5)
C50.0387 (8)0.0436 (8)0.0368 (8)−0.0002 (6)−0.0041 (6)0.0017 (6)
C60.0391 (8)0.0451 (8)0.0401 (8)0.0053 (7)0.0056 (6)−0.0003 (6)
C70.0455 (9)0.0360 (7)0.0314 (7)0.0038 (6)0.0032 (6)−0.0024 (6)
C80.0399 (8)0.0310 (7)0.0300 (7)0.0009 (6)−0.0003 (6)−0.0001 (5)
C90.0451 (9)0.0360 (7)0.0314 (7)−0.0023 (6)−0.0024 (6)0.0007 (6)
C100.0486 (9)0.0446 (8)0.0345 (8)−0.0049 (7)−0.0046 (6)−0.0055 (6)
C110.0346 (8)0.0464 (8)0.0327 (7)0.0005 (6)−0.0059 (6)−0.0049 (6)
C120.0679 (12)0.0845 (14)0.0394 (9)−0.0071 (10)0.0132 (8)0.0016 (9)
O1—C21.2165 (18)C4—H4A0.9300
O2—C21.3617 (18)C5—C61.395 (2)
O2—C31.3764 (17)C6—C71.367 (2)
O3—C51.3515 (18)C6—H6A0.9300
O3—H30.96 (2)C7—C81.399 (2)
O4—C111.1944 (19)C7—H7A0.9300
O5—C111.3183 (17)C8—C91.438 (2)
O5—C121.454 (2)C9—C101.5064 (19)
C1—C91.345 (2)C10—C111.505 (2)
C1—C21.437 (2)C10—H10A0.9700
C1—H1A0.9300C10—H10B0.9700
C3—C41.381 (2)C12—H12A0.9600
C3—C81.3971 (19)C12—H12B0.9600
C4—C51.380 (2)C12—H12C0.9600
C2—O2—C3121.67 (11)C8—C7—H7A119.4
C5—O3—H3111.6 (14)C3—C8—C7116.67 (12)
C11—O5—C12116.88 (13)C3—C8—C9118.30 (13)
C9—C1—C2122.00 (13)C7—C8—C9125.03 (12)
C9—C1—H1A119.0C1—C9—C8119.25 (13)
C2—C1—H1A119.0C1—C9—C10120.65 (13)
O1—C2—O2116.43 (13)C8—C9—C10120.09 (13)
O1—C2—C1125.70 (14)C11—C10—C9114.04 (12)
O2—C2—C1117.87 (13)C11—C10—H10A108.7
O2—C3—C4115.91 (12)C9—C10—H10A108.7
O2—C3—C8120.90 (12)C11—C10—H10B108.7
C4—C3—C8123.19 (13)C9—C10—H10B108.7
C5—C4—C3118.19 (13)H10A—C10—H10B107.6
C5—C4—H4A120.9O4—C11—O5124.29 (14)
C3—C4—H4A120.9O4—C11—C10125.51 (13)
O3—C5—C4122.97 (13)O5—C11—C10110.16 (13)
O3—C5—C6116.74 (14)O5—C12—H12A109.5
C4—C5—C6120.28 (13)O5—C12—H12B109.5
C7—C6—C5120.38 (14)H12A—C12—H12B109.5
C7—C6—H6A119.8O5—C12—H12C109.5
C5—C6—H6A119.8H12A—C12—H12C109.5
C6—C7—C8121.25 (13)H12B—C12—H12C109.5
C6—C7—H7A119.4
C3—O2—C2—O1179.92 (13)C4—C3—C8—C9−178.69 (13)
C3—O2—C2—C1−0.1 (2)C6—C7—C8—C3−1.5 (2)
C9—C1—C2—O1−179.37 (16)C6—C7—C8—C9178.62 (13)
C9—C1—C2—O20.7 (2)C2—C1—C9—C8−0.4 (2)
C2—O2—C3—C4178.95 (12)C2—C1—C9—C10178.94 (14)
C2—O2—C3—C8−0.7 (2)C3—C8—C9—C1−0.4 (2)
O2—C3—C4—C5−179.42 (12)C7—C8—C9—C1179.48 (14)
C8—C3—C4—C50.2 (2)C3—C8—C9—C10−179.72 (13)
C3—C4—C5—O3177.69 (14)C7—C8—C9—C100.1 (2)
C3—C4—C5—C6−1.8 (2)C1—C9—C10—C11108.63 (16)
O3—C5—C6—C7−177.79 (14)C8—C9—C10—C11−72.02 (18)
C4—C5—C6—C71.8 (2)C12—O5—C11—O42.1 (2)
C5—C6—C7—C80.0 (2)C12—O5—C11—C10−179.98 (14)
O2—C3—C8—C7−178.95 (12)C9—C10—C11—O4−8.4 (2)
C4—C3—C8—C71.5 (2)C9—C10—C11—O5173.79 (13)
O2—C3—C8—C90.91 (19)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.96 (2)1.74 (2)2.7002 (17)177 (2)
C7—H7A···O4ii0.932.473.3320 (18)155
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O3H3O1i 0.96(2)1.74(2)2.7002(17)177(2)
C7H7AO4ii 0.932.473.3320(18)155

Symmetry codes: (i) ; (ii) .

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