Literature DB >> 26396898

Crystal structure of 3-chloro-N-(2-nitro-phen-yl)benzamide.

Rodolfo Moreno-Fuquen1, Alexis Azcárate1, Alan R Kennedy2.   

Abstract

In the title compound, C13H9ClN2O3, the mean plane of the central amide fragment (r.m.s. deviation = 0.016 Å) subtends dihedral angles of 15.2 (2) and 8.2 (2)° with the chloro- and nitro-substituted benzene rings, respectively. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming C(7) chains which propagate along [010], but no Cl⋯Cl short contacts are observed.

Entities:  

Keywords:  benzamide; crystal structure; halogen–halogen inter­actions; hydrogen bonding

Year:  2015        PMID: 26396898      PMCID: PMC4555397          DOI: 10.1107/S2056989015014620

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For halogenhalogen inter­actions in benzanilide compounds, see: Vener et al. (2013 ▸); Nayak et al. (2011 ▸).

Experimental

Crystal data

C13H9ClN2O3 M = 276.67 Monoclinic, a = 12.6300 (9) Å b = 14.1462 (12) Å c = 6.7797 (6) Å β = 105.475 (7)° V = 1167.39 (17) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 123 K 0.40 × 0.08 × 0.05 mm

Data collection

Oxford Diffraction Gemini S diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▸) T min = 0.839, T max = 1.000 10366 measured reflections 10366 independent reflections 7015 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.179 S = 1.00 10367 reflections 177 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.78 e Å−3 Δρmin = −0.49 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2006 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015014620/hb7476sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014620/hb7476Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014620/hb7476Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015014620/hb7476fig1.tif The mol­ecular structure of (I) with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitrary radius. Click here for additional data file. x y z . DOI: 10.1107/S2056989015014620/hb7476fig2.tif Part of the crystal structure of (I), showing the formation of C(7) chains along [010] [Symmetry code: (i) −x + 1, y − , −z + ]. CCDC reference: 1416793 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H9ClN2O3Dx = 1.574 Mg m3
Mr = 276.67Melting point: 399(1) K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 12.6300 (9) ÅCell parameters from 10366 reflections
b = 14.1462 (12) Åθ = 3.3–27.0°
c = 6.7797 (6) ŵ = 0.33 mm1
β = 105.475 (7)°T = 123 K
V = 1167.39 (17) Å3Needle, yellow
Z = 40.40 × 0.08 × 0.05 mm
F(000) = 568
Oxford Diffraction Gemini S diffractometer10366 independent reflections
Radiation source: fine-focus sealed tube7015 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
ω scansθmax = 29.0°, θmin = 3.3°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −17→17
Tmin = 0.839, Tmax = 1.000k = −17→17
10366 measured reflectionsl = −9→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0657P)2] where P = (Fo2 + 2Fc2)/3
10367 reflections(Δ/σ)max < 0.001
177 parametersΔρmax = 0.78 e Å3
0 restraintsΔρmin = −0.49 e Å3
Experimental. IR spectra was recorded on a FT—IR SHIMADZU IR-Affinity-1 spectrophotometer. IR (KBr), cm-1, 3348 (amide N–H); 1684 (amide, C=O); 1499 and 1342 (-NO2)Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.34.46 (release 25-11-2010 CrysAlis171 .NET) (compiled Nov 25 2010,17:55:46) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.13525 (11)0.17880 (10)0.1877 (3)0.0345 (4)
O10.3249 (3)0.3758 (3)0.5550 (7)0.0413 (11)
O20.2403 (3)0.0390 (3)0.4902 (6)0.0417 (12)
O30.3446 (4)−0.0604 (3)0.6933 (7)0.0467 (13)
N10.2996 (4)0.2164 (3)0.5084 (7)0.0270 (11)
N20.3297 (4)0.0170 (4)0.6117 (7)0.0306 (12)
C3−0.0406 (4)0.2702 (4)0.2478 (9)0.0246 (12)
C20.0686 (4)0.2489 (4)0.3410 (8)0.0266 (14)
H20.09140.18520.36980.032*
C10.1440 (5)0.3226 (4)0.3914 (8)0.0263 (13)
C60.1099 (5)0.4148 (4)0.3463 (9)0.0344 (16)
H60.16160.46500.37860.041*
C5−0.0006 (5)0.4342 (4)0.2534 (10)0.0384 (15)
H5−0.02420.49770.22410.046*
C4−0.0754 (5)0.3611 (4)0.2040 (10)0.0337 (14)
H4−0.15050.37390.14010.040*
C70.2650 (5)0.3091 (4)0.4934 (8)0.0264 (13)
C80.4049 (5)0.1813 (4)0.6035 (8)0.0250 (13)
C90.4207 (4)0.0857 (4)0.6545 (8)0.0262 (13)
C100.5238 (5)0.0478 (4)0.7497 (8)0.0313 (14)
H100.5320−0.01740.78380.038*
C110.6131 (5)0.1073 (5)0.7928 (9)0.0346 (15)
H110.68410.08310.85750.042*
C120.6003 (5)0.2006 (4)0.7434 (8)0.0339 (15)
H120.66300.24060.77390.041*
C130.4981 (4)0.2388 (4)0.6497 (8)0.0298 (14)
H130.49160.30410.61670.036*
H1N0.253 (6)0.161 (5)0.460 (10)0.07 (3)*
U11U22U33U12U13U23
Cl10.0180 (6)0.0357 (8)0.0445 (8)−0.0025 (6)−0.0009 (8)−0.0003 (8)
O10.023 (2)0.030 (3)0.064 (3)−0.001 (2)−0.001 (2)−0.002 (2)
O20.021 (2)0.035 (3)0.061 (3)−0.0019 (19)−0.004 (2)0.001 (2)
O30.034 (3)0.028 (3)0.072 (3)−0.002 (2)0.003 (2)0.012 (2)
N10.017 (2)0.028 (3)0.032 (3)−0.002 (2)−0.002 (2)0.000 (2)
N20.017 (3)0.032 (3)0.041 (3)−0.002 (2)0.006 (2)−0.001 (2)
C30.018 (3)0.028 (3)0.028 (3)−0.001 (2)0.005 (3)−0.002 (3)
C20.018 (3)0.030 (3)0.031 (3)0.001 (3)0.004 (2)0.003 (2)
C10.019 (3)0.031 (4)0.028 (3)0.000 (3)0.005 (2)0.003 (2)
C60.023 (3)0.028 (4)0.048 (4)−0.001 (3)0.002 (3)−0.001 (3)
C50.024 (3)0.033 (4)0.053 (4)0.007 (2)0.000 (4)0.009 (4)
C40.022 (3)0.039 (4)0.039 (3)0.007 (3)0.005 (3)0.005 (3)
C70.022 (3)0.027 (3)0.027 (3)−0.002 (3)0.001 (2)0.003 (3)
C80.016 (3)0.031 (4)0.025 (3)0.001 (3)0.001 (2)0.000 (3)
C90.015 (3)0.029 (3)0.032 (3)−0.004 (2)0.003 (2)−0.001 (3)
C100.023 (3)0.029 (4)0.040 (4)0.001 (3)0.005 (3)0.003 (3)
C110.018 (3)0.043 (4)0.041 (4)−0.002 (3)0.003 (3)−0.002 (3)
C120.017 (3)0.042 (4)0.040 (4)−0.004 (3)0.005 (3)−0.004 (3)
C130.022 (3)0.028 (3)0.038 (3)0.002 (3)0.005 (3)0.002 (3)
Cl1—C31.735 (5)C6—H60.9500
O1—C71.212 (6)C5—C41.381 (7)
O2—N21.247 (5)C5—H50.9500
O3—N21.219 (6)C4—H40.9500
N1—C71.376 (7)C8—C91.396 (7)
N1—C81.405 (7)C8—C131.397 (7)
N1—H1N0.98 (7)C9—C101.397 (8)
N2—C91.474 (7)C10—C111.374 (8)
C3—C41.365 (7)C10—H100.9500
C3—C21.388 (7)C11—C121.360 (8)
C2—C11.392 (7)C11—H110.9500
C2—H20.9500C12—C131.387 (7)
C1—C61.382 (7)C12—H120.9500
C1—C71.513 (8)C13—H130.9500
C6—C51.396 (7)
C7—N1—C8127.8 (5)C5—C4—H4120.2
C7—N1—H1N126 (4)O1—C7—N1124.1 (5)
C8—N1—H1N106 (4)O1—C7—C1121.3 (5)
O3—N2—O2121.9 (5)N1—C7—C1114.6 (5)
O3—N2—C9119.0 (5)C9—C8—C13116.8 (5)
O2—N2—C9119.1 (5)C9—C8—N1120.8 (5)
C4—C3—C2121.8 (5)C13—C8—N1122.4 (5)
C4—C3—Cl1119.3 (4)C8—C9—C10122.7 (5)
C2—C3—Cl1118.9 (4)C8—C9—N2122.5 (5)
C3—C2—C1118.7 (5)C10—C9—N2114.8 (5)
C3—C2—H2120.6C11—C10—C9118.3 (6)
C1—C2—H2120.6C11—C10—H10120.9
C6—C1—C2120.0 (5)C9—C10—H10120.9
C6—C1—C7116.0 (5)C12—C11—C10120.3 (6)
C2—C1—C7124.0 (5)C12—C11—H11119.8
C1—C6—C5120.0 (6)C10—C11—H11119.8
C1—C6—H6120.0C11—C12—C13121.7 (6)
C5—C6—H6120.0C11—C12—H12119.2
C4—C5—C6119.9 (6)C13—C12—H12119.2
C4—C5—H5120.0C12—C13—C8120.1 (5)
C6—C5—H5120.0C12—C13—H13119.9
C3—C4—C5119.5 (5)C8—C13—H13119.9
C3—C4—H4120.2
O2—O2—N2—O30.0 (3)C7—N1—C8—C13−18.1 (9)
O2—O2—N2—C90.0 (6)C13—C8—C9—C100.9 (9)
C4—C3—C2—C10.2 (9)N1—C8—C9—C10−179.8 (5)
Cl1—C3—C2—C1−179.1 (4)C13—C8—C9—N2−179.1 (5)
C3—C2—C1—C6−0.8 (8)N1—C8—C9—N20.2 (8)
C3—C2—C1—C7179.9 (5)O3—N2—C9—C8−166.2 (6)
C2—C1—C6—C51.1 (9)O2—N2—C9—C815.1 (8)
C7—C1—C6—C5−179.6 (5)O2—N2—C9—C815.1 (8)
C1—C6—C5—C4−0.9 (10)O3—N2—C9—C1013.8 (7)
C2—C3—C4—C50.0 (10)O2—N2—C9—C10−164.8 (5)
Cl1—C3—C4—C5179.3 (5)O2—N2—C9—C10−164.8 (5)
C6—C5—C4—C30.3 (10)C8—C9—C10—C11−0.6 (9)
C8—N1—C7—O13.7 (10)N2—C9—C10—C11179.4 (5)
C8—N1—C7—C1−176.5 (5)C9—C10—C11—C120.0 (9)
C6—C1—C7—O19.1 (8)C10—C11—C12—C130.2 (9)
C2—C1—C7—O1−171.5 (6)C11—C12—C13—C80.1 (9)
C6—C1—C7—N1−170.6 (5)C9—C8—C13—C12−0.6 (8)
C2—C1—C7—N18.7 (8)N1—C8—C13—C12−179.9 (5)
C7—N1—C8—C9162.7 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O20.98 (7)1.75 (7)2.612 (6)144 (6)
C10—H10···O1i0.952.393.158 (7)138
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO20.98(7)1.75(7)2.612(6)144(6)
C10H10O1i 0.952.393.158(7)138

Symmetry code: (i) .

  2 in total

1.  Cl···Cl interactions in molecular crystals: insights from the theoretical charge density analysis.

Authors:  Mikhail V Vener; Anastasia V Shishkina; Alexey A Rykounov; Vladimir G Tsirelson
Journal:  J Phys Chem A       Date:  2013-08-23       Impact factor: 2.781

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  2 in total

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