Literature DB >> 26396895

Crystal structure of ethyl 4-(2-chloro-phen-yl)-2-methyl-4H-pyrimido[2,1-b][1,3]benzo-thia-zole-3-carboxyl-ate.

Balbir Kumar1, Manmeet Kour2, Satya Paul2, Rajni Kant1, Vivek K Gupta1.   

Abstract

In the title compound, C20H17ClN2O2S, the dihedral angle between the planes of the benzo-thia-zole fused ring system (r.m.s. deviation = 0.024 Å) and the chloro-benzene ring is 89.62 (12)°. The ester C-O-C-C side chain has an anti orientation [torsion angle = -155.2 (3)°]. In the crystal, weak aromatic π-π stacking inter-actions are observed between the phenyl and pyrimidine rings [centroid-centroid seperation = 3.666 (2) Å].

Entities:  

Keywords:  biological activity; crystal structure; ester; pyrimido[2,1-b][1,3]benzo­thia­zole

Year:  2015        PMID: 26396895      PMCID: PMC4555405          DOI: 10.1107/S2056989015014905

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological activities of benzo­thia­zoles, see: Landreau et al. (2002 ▸); Russo et al. (1985 ▸). For a related structure, see: Sankar et al. (2015 ▸).

Experimental

Crystal data

C20H17ClN2O2S M = 384.87 Triclinic, a = 8.9049 (8) Å b = 8.9275 (10) Å c = 12.3564 (11) Å α = 88.434 (8)° β = 83.536 (7)° γ = 66.201 (10)° V = 892.90 (15) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▸) T min = 0.880, T max = 1.000 6440 measured reflections 3477 independent reflections 2275 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.142 S = 1.03 3477 reflections 237 parameters H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.35 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015014905/hb7475sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014905/hb7475Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014905/hb7475Isup3.cml Click here for additional data file. ORTEP . DOI: 10.1107/S2056989015014905/hb7475fig1.tif ORTEP view of the mol­ecule with displacement ellipsoids drawn at the 40% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015014905/hb7475fig2.tif The packing arrangement of mol­ecules viewed down the a axis. CCDC reference: 1406433 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H17ClN2O2SZ = 2
Mr = 384.87F(000) = 400
Triclinic, P1Dx = 1.431 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9049 (8) ÅCell parameters from 1737 reflections
b = 8.9275 (10) Åθ = 4.1–27.4°
c = 12.3564 (11) ŵ = 0.35 mm1
α = 88.434 (8)°T = 293 K
β = 83.536 (7)°Block, colourless
γ = 66.201 (10)°0.30 × 0.20 × 0.20 mm
V = 892.90 (15) Å3
Oxford Diffraction Xcalibur Sapphire3 diffractometer3477 independent reflections
Radiation source: fine-focus sealed tube2275 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.9°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −10→10
Tmin = 0.880, Tmax = 1.000l = −9→15
6440 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0556P)2 + 0.235P] where P = (Fo2 + 2Fc2)/3
3477 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S70.83804 (10)0.01946 (11)0.38623 (8)0.0592 (3)
Cl10.02890 (10)0.33670 (11)0.39074 (8)0.0648 (3)
N90.5363 (3)0.0924 (2)0.35456 (18)0.0370 (6)
C250.1519 (4)0.3941 (3)0.2942 (2)0.0431 (7)
C120.4497 (3)−0.0172 (3)0.2052 (2)0.0368 (7)
O160.1721 (3)0.0825 (2)0.17927 (17)0.0531 (6)
N100.7388 (3)−0.0979 (3)0.2270 (2)0.0503 (7)
C210.4011 (4)0.3408 (3)0.1786 (2)0.0445 (7)
H210.50870.27150.15310.053*
C80.6924 (3)−0.0008 (3)0.3117 (2)0.0427 (7)
C200.3121 (3)0.2857 (3)0.2573 (2)0.0345 (6)
C150.3219 (4)−0.0328 (3)0.1475 (2)0.0446 (7)
O190.3434 (3)−0.1335 (3)0.0766 (2)0.0719 (7)
C130.3919 (3)0.1118 (3)0.2977 (2)0.0341 (6)
H130.31100.09110.34950.041*
C10.5264 (3)0.1829 (3)0.4491 (2)0.0370 (7)
C110.6124 (4)−0.1115 (3)0.1764 (2)0.0443 (7)
C30.4058 (4)0.3661 (4)0.6003 (3)0.0553 (9)
H30.31250.43720.64290.066*
C240.0834 (4)0.5496 (4)0.2540 (3)0.0612 (10)
H24−0.02380.62010.27950.073*
C20.3873 (4)0.2860 (4)0.5114 (2)0.0473 (8)
H20.28290.30190.49440.057*
C170.0396 (4)0.0912 (4)0.1179 (3)0.0608 (9)
H17A−0.00470.01280.14550.073*
H17B0.08150.06420.04190.073*
C60.6823 (4)0.1580 (3)0.4765 (2)0.0439 (7)
C140.6786 (4)−0.2416 (4)0.0879 (3)0.0640 (10)
H14A0.6468−0.33000.10870.096*
H14B0.7969−0.28190.07720.096*
H14C0.6343−0.19590.02140.096*
C50.6991 (4)0.2383 (4)0.5662 (3)0.0561 (9)
H50.80310.22140.58450.067*
C40.5604 (4)0.3422 (4)0.6264 (3)0.0601 (9)
H40.56970.39780.68610.072*
C230.1744 (5)0.5998 (4)0.1761 (3)0.0675 (11)
H230.12830.70510.14910.081*
C18−0.0923 (5)0.2586 (5)0.1279 (4)0.0812 (12)
H18A−0.14190.28020.20210.122*
H18B−0.17470.26770.08130.122*
H18C−0.04570.33650.10690.122*
C220.3327 (5)0.4969 (4)0.1373 (3)0.0594 (10)
H220.39320.53160.08390.071*
U11U22U33U12U13U23
S70.0328 (4)0.0641 (5)0.0699 (6)−0.0056 (4)−0.0153 (4)−0.0055 (5)
Cl10.0374 (5)0.0726 (6)0.0751 (6)−0.0129 (4)−0.0018 (4)−0.0116 (5)
N90.0318 (13)0.0316 (11)0.0424 (14)−0.0058 (10)−0.0106 (11)0.0003 (10)
C250.0382 (16)0.0343 (14)0.0534 (19)−0.0077 (13)−0.0169 (15)−0.0053 (13)
C120.0402 (16)0.0244 (12)0.0425 (16)−0.0089 (12)−0.0075 (14)−0.0002 (12)
O160.0401 (12)0.0549 (12)0.0632 (14)−0.0144 (10)−0.0165 (11)−0.0126 (11)
N100.0361 (14)0.0421 (13)0.0579 (17)−0.0002 (11)−0.0040 (13)−0.0080 (13)
C210.0514 (19)0.0383 (15)0.0456 (18)−0.0177 (14)−0.0141 (16)−0.0004 (13)
C80.0324 (16)0.0349 (14)0.0517 (18)−0.0028 (12)−0.0107 (14)0.0046 (14)
C200.0341 (15)0.0295 (13)0.0395 (16)−0.0100 (12)−0.0131 (13)−0.0019 (12)
C150.0512 (19)0.0349 (15)0.0499 (18)−0.0189 (14)−0.0085 (16)0.0017 (14)
O190.0711 (17)0.0584 (14)0.0851 (18)−0.0210 (13)−0.0161 (15)−0.0285 (13)
C130.0299 (14)0.0297 (13)0.0421 (16)−0.0097 (11)−0.0104 (13)0.0026 (12)
C10.0351 (16)0.0344 (14)0.0413 (16)−0.0112 (12)−0.0152 (13)0.0058 (13)
C110.0492 (18)0.0291 (14)0.0487 (18)−0.0092 (13)−0.0068 (15)−0.0011 (13)
C30.050 (2)0.0590 (19)0.0467 (19)−0.0105 (16)−0.0080 (16)−0.0088 (16)
C240.053 (2)0.0373 (17)0.081 (3)0.0000 (16)−0.028 (2)−0.0075 (17)
C20.0403 (17)0.0554 (18)0.0430 (17)−0.0143 (15)−0.0111 (15)−0.0004 (15)
C170.052 (2)0.068 (2)0.074 (2)−0.0304 (18)−0.0224 (19)−0.0030 (18)
C60.0400 (17)0.0410 (15)0.0484 (18)−0.0121 (13)−0.0129 (15)0.0037 (14)
C140.058 (2)0.0497 (18)0.068 (2)−0.0050 (17)−0.0011 (19)−0.0180 (18)
C50.048 (2)0.064 (2)0.060 (2)−0.0208 (17)−0.0246 (18)0.0024 (18)
C40.065 (2)0.066 (2)0.053 (2)−0.0261 (19)−0.0207 (19)−0.0087 (18)
C230.087 (3)0.0312 (16)0.079 (3)−0.0107 (19)−0.042 (2)0.0046 (18)
C180.064 (3)0.082 (3)0.098 (3)−0.022 (2)−0.043 (2)0.008 (2)
C220.092 (3)0.0491 (19)0.051 (2)−0.039 (2)−0.021 (2)0.0095 (16)
S7—C81.741 (3)C11—C141.505 (4)
S7—C61.744 (3)C3—C41.379 (4)
Cl1—C251.735 (3)C3—C21.388 (4)
N9—C81.353 (3)C3—H30.9300
N9—C11.413 (3)C24—C231.370 (5)
N9—C131.481 (3)C24—H240.9300
C25—C241.376 (4)C2—H20.9300
C25—C201.394 (4)C17—C181.479 (5)
C12—C111.360 (4)C17—H17A0.9700
C12—C151.462 (4)C17—H17B0.9700
C12—C131.536 (3)C6—C51.390 (4)
O16—C151.338 (3)C14—H14A0.9600
O16—C171.448 (3)C14—H14B0.9600
N10—C81.296 (4)C14—H14C0.9600
N10—C111.394 (4)C5—C41.359 (4)
C21—C221.385 (4)C5—H50.9300
C21—C201.389 (4)C4—H40.9300
C21—H210.9300C23—C221.374 (5)
C20—C131.521 (3)C23—H230.9300
C15—O191.216 (3)C18—H18A0.9600
C13—H130.9800C18—H18B0.9600
C1—C21.370 (4)C18—H18C0.9600
C1—C61.394 (4)C22—H220.9300
C8—S7—C691.01 (14)C23—C24—C25119.5 (3)
C8—N9—C1114.1 (2)C23—C24—H24120.2
C8—N9—C13121.6 (2)C25—C24—H24120.2
C1—N9—C13123.8 (2)C1—C2—C3118.5 (3)
C24—C25—C20121.5 (3)C1—C2—H2120.7
C24—C25—Cl1117.2 (3)C3—C2—H2120.7
C20—C25—Cl1121.3 (2)O16—C17—C18109.4 (3)
C11—C12—C15121.0 (2)O16—C17—H17A109.8
C11—C12—C13121.9 (2)C18—C17—H17A109.8
C15—C12—C13117.1 (2)O16—C17—H17B109.8
C15—O16—C17116.6 (2)C18—C17—H17B109.8
C8—N10—C11115.9 (2)H17A—C17—H17B108.2
C22—C21—C20121.3 (3)C5—C6—C1120.7 (3)
C22—C21—H21119.3C5—C6—S7128.0 (2)
C20—C21—H21119.3C1—C6—S7111.2 (2)
N10—C8—N9127.7 (3)C11—C14—H14A109.5
N10—C8—S7120.5 (2)C11—C14—H14B109.5
N9—C8—S7111.8 (2)H14A—C14—H14B109.5
C21—C20—C25117.5 (3)C11—C14—H14C109.5
C21—C20—C13119.1 (2)H14A—C14—H14C109.5
C25—C20—C13123.4 (3)H14B—C14—H14C109.5
O19—C15—O16121.7 (3)C4—C5—C6118.6 (3)
O19—C15—C12126.3 (3)C4—C5—H5120.7
O16—C15—C12112.0 (2)C6—C5—H5120.7
N9—C13—C20110.1 (2)C5—C4—C3120.9 (3)
N9—C13—C12108.4 (2)C5—C4—H4119.6
C20—C13—C12112.7 (2)C3—C4—H4119.6
N9—C13—H13108.5C24—C23—C22120.9 (3)
C20—C13—H13108.5C24—C23—H23119.5
C12—C13—H13108.5C22—C23—H23119.5
C2—C1—C6120.2 (2)C17—C18—H18A109.5
C2—C1—N9128.0 (2)C17—C18—H18B109.5
C6—C1—N9111.9 (2)H18A—C18—H18B109.5
C12—C11—N10123.1 (2)C17—C18—H18C109.5
C12—C11—C14125.1 (3)H18A—C18—H18C109.5
N10—C11—C14111.8 (3)H18B—C18—H18C109.5
C4—C3—C2121.1 (3)C23—C22—C21119.2 (4)
C4—C3—H3119.5C23—C22—H22120.4
C2—C3—H3119.5C21—C22—H22120.4
C11—N10—C8—N9−2.2 (5)C15—C12—C13—C20−65.5 (3)
C11—N10—C8—S7176.9 (2)C8—N9—C1—C2−179.2 (3)
C1—N9—C8—N10178.7 (3)C13—N9—C1—C28.4 (4)
C13—N9—C8—N10−8.7 (5)C8—N9—C1—C61.1 (3)
C1—N9—C8—S7−0.4 (3)C13—N9—C1—C6−171.3 (2)
C13—N9—C8—S7172.18 (18)C15—C12—C11—N10178.2 (3)
C6—S7—C8—N10−179.5 (3)C13—C12—C11—N10−0.7 (4)
C6—S7—C8—N9−0.3 (2)C15—C12—C11—C14−2.0 (5)
C22—C21—C20—C25−0.7 (4)C13—C12—C11—C14179.1 (3)
C22—C21—C20—C13178.5 (2)C8—N10—C11—C126.8 (4)
C24—C25—C20—C210.4 (4)C8—N10—C11—C14−173.1 (3)
Cl1—C25—C20—C21178.98 (19)C20—C25—C24—C23−0.2 (4)
C24—C25—C20—C13−178.9 (2)Cl1—C25—C24—C23−178.8 (2)
Cl1—C25—C20—C13−0.3 (4)C6—C1—C2—C31.1 (4)
C17—O16—C15—O19−5.8 (4)N9—C1—C2—C3−178.6 (3)
C17—O16—C15—C12172.5 (2)C4—C3—C2—C1−0.5 (5)
C11—C12—C15—O195.4 (5)C15—O16—C17—C18−155.2 (3)
C13—C12—C15—O19−175.7 (3)C2—C1—C6—C5−0.8 (4)
C11—C12—C15—O16−172.8 (3)N9—C1—C6—C5179.0 (3)
C13—C12—C15—O166.1 (4)C2—C1—C6—S7179.0 (2)
C8—N9—C13—C20−110.7 (3)N9—C1—C6—S7−1.3 (3)
C1—N9—C13—C2061.2 (3)C8—S7—C6—C5−179.4 (3)
C8—N9—C13—C1212.9 (3)C8—S7—C6—C10.9 (2)
C1—N9—C13—C12−175.2 (2)C1—C6—C5—C4−0.2 (5)
C21—C20—C13—N964.4 (3)S7—C6—C5—C4−179.9 (3)
C25—C20—C13—N9−116.4 (3)C6—C5—C4—C30.8 (5)
C21—C20—C13—C12−56.7 (3)C2—C3—C4—C5−0.5 (5)
C25—C20—C13—C12122.5 (3)C25—C24—C23—C220.3 (5)
C11—C12—C13—N9−8.7 (4)C24—C23—C22—C21−0.6 (5)
C15—C12—C13—N9172.4 (2)C20—C21—C22—C230.9 (4)
C11—C12—C13—C20113.4 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure of ethyl 4-(2,4-di-chloro-phen-yl)-2-methyl-4H-benzo[4,5]thia-zolo[3,2-a]pyrimidine-3-carboxyl-ate.

Authors:  T Sankar; S Naveen; N K Lokanath; K Gunasekaran
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-15

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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