Literature DB >> 26396887

Crystal structure of dimethomorph.

Gihaeng Kang1, Jineun Kim1, Eunjin Kwon1, Tae Ho Kim1.   

Abstract

In the title compound, C21H22ClNO4 [systematic name: (E)-3-(4-chloro-phen-yl)-3-(3,4-di-meth-oxy-phen-yl)-1-(morpholin-4-yl)prop-2-en-1-one], which is the morpholine fungicide dimethomorph, the dihedral angles between the mean planes of the central chloro-phenyl and the terminal benzene and morpholine (r.m.s. deviation = 0.2233 Å) rings are 71.74 (6) and 63.65 (7)°, respectively. In the crystal, molecules are linked via C-H⋯O hydrogen bonds and weak Cl⋯π interactions [3.8539 (11) Å], forming a three-dimensional structure.

Entities:  

Keywords:  crystal structure; dimethomorph; fungicide; prop-2-en-1-one

Year:  2015        PMID: 26396887      PMCID: PMC4555370          DOI: 10.1107/S2056989015014735

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For information on the fungicidal properties of the title compound, see: Xu et al. (2015 ▸). For related crystal structures, see: Chai & Liu (2011 ▸); Lu & Shi (2011 ▸).

Experimental

Crystal data

C21H22ClNO4 M = 387.84 Monoclinic, a = 6.6238 (2) Å b = 13.2232 (4) Å c = 21.4810 (7) Å β = 97.1674 (19)° V = 1866.77 (10) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 173 K 0.38 × 0.06 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.917, T max = 0.993 18090 measured reflections 4276 independent reflections 3119 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.133 S = 1.04 4276 reflections 246 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.53 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015014735/hg5456sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014735/hg5456Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015014735/hg5456fig1.tif The asymmetric unit of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. a . DOI: 10.1107/S2056989015014735/hg5456fig2.tif Crystal packing viewed along the a axis. The inter­molecular inter­actions are shown as dashed lines. CCDC reference: 1417163 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H22ClNO4F(000) = 816
Mr = 387.84Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.6238 (2) ÅCell parameters from 3670 reflections
b = 13.2232 (4) Åθ = 2.5–24.0°
c = 21.4810 (7) ŵ = 0.23 mm1
β = 97.1674 (19)°T = 173 K
V = 1866.77 (10) Å3Needle, colourless
Z = 40.38 × 0.06 × 0.03 mm
Bruker APEXII CCD diffractometer3119 reflections with I > 2σ(I)
φ and ω scansRint = 0.047
Absorption correction: multi-scan (SADABS; Bruker, 2013)θmax = 27.5°, θmin = 1.8°
Tmin = 0.917, Tmax = 0.993h = −8→8
18090 measured reflectionsk = −14→17
4276 independent reflectionsl = −27→27
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.059P)2 + 0.6606P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4276 reflectionsΔρmax = 0.27 e Å3
246 parametersΔρmin = −0.53 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl10.31366 (10)0.59912 (5)0.47448 (3)0.0574 (2)
O10.5956 (2)0.38430 (11)0.96279 (6)0.0370 (4)
O2−0.0418 (2)0.34526 (10)0.82830 (7)0.0370 (4)
O3−0.1413 (2)0.67931 (10)0.90317 (6)0.0337 (3)
O4−0.4849 (2)0.73290 (10)0.84142 (6)0.0368 (4)
N10.2962 (2)0.35718 (12)0.85873 (7)0.0281 (4)
C10.5023 (3)0.38939 (15)0.84994 (9)0.0305 (4)
H1A0.49690.43470.81310.037*
H1B0.58550.32960.84210.037*
C20.5976 (3)0.44402 (16)0.90772 (9)0.0347 (5)
H2A0.73990.46170.90270.042*
H2B0.52260.50780.91250.042*
C30.3918 (3)0.35949 (17)0.97178 (9)0.0364 (5)
H3A0.31500.42240.97720.044*
H3B0.39280.31871.01040.044*
C40.2872 (3)0.30099 (16)0.91686 (9)0.0335 (5)
H4A0.35420.23450.91420.040*
H4B0.14340.28900.92290.040*
C50.1286 (3)0.37008 (13)0.81674 (9)0.0267 (4)
C60.1627 (3)0.41177 (14)0.75448 (9)0.0277 (4)
H60.26830.38190.73460.033*
C70.0584 (3)0.48755 (13)0.72382 (9)0.0263 (4)
C80.1046 (3)0.51370 (14)0.65975 (9)0.0274 (4)
C90.1513 (3)0.43952 (16)0.61797 (9)0.0354 (5)
H90.14120.37020.62890.043*
C100.2124 (3)0.46527 (17)0.56054 (10)0.0411 (5)
H100.24240.41400.53210.049*
C110.2291 (3)0.56604 (18)0.54519 (10)0.0378 (5)
C120.1811 (3)0.64122 (16)0.58492 (10)0.0350 (5)
H120.19230.71030.57370.042*
C130.1159 (3)0.61476 (15)0.64179 (9)0.0303 (4)
H130.07850.66640.66890.036*
C14−0.0896 (3)0.55131 (13)0.75275 (9)0.0261 (4)
C15−0.0445 (3)0.58425 (13)0.81488 (8)0.0254 (4)
H150.08080.56480.83820.030*
C16−0.1772 (3)0.64407 (13)0.84292 (8)0.0255 (4)
C17−0.3626 (3)0.67311 (13)0.80926 (9)0.0278 (4)
C18−0.4093 (3)0.64144 (14)0.74781 (9)0.0304 (4)
H18−0.53510.66060.72470.037*
C19−0.2734 (3)0.58161 (14)0.71962 (9)0.0293 (4)
H19−0.30670.56120.67720.035*
C200.0428 (3)0.64921 (17)0.93982 (9)0.0369 (5)
H20A0.04760.57530.94280.055*
H20B0.04850.67820.98200.055*
H20C0.15910.67340.91990.055*
C21−0.6601 (3)0.77604 (16)0.80687 (10)0.0388 (5)
H21A−0.61920.81870.77330.058*
H21B−0.73240.81720.83490.058*
H21C−0.74990.72200.78850.058*
U11U22U33U12U13U23
Cl10.0525 (4)0.0813 (5)0.0412 (3)0.0133 (3)0.0173 (3)0.0147 (3)
O10.0326 (8)0.0484 (8)0.0281 (7)−0.0095 (7)−0.0041 (6)0.0043 (6)
O20.0226 (7)0.0352 (7)0.0529 (9)−0.0019 (6)0.0031 (6)0.0124 (7)
O30.0356 (8)0.0358 (7)0.0283 (7)0.0058 (6)−0.0015 (6)−0.0037 (6)
O40.0333 (8)0.0410 (8)0.0362 (8)0.0113 (6)0.0048 (6)0.0003 (6)
N10.0243 (8)0.0340 (9)0.0255 (8)−0.0049 (7)0.0017 (7)0.0040 (7)
C10.0235 (10)0.0395 (11)0.0283 (10)−0.0039 (8)0.0028 (8)0.0010 (9)
C20.0310 (11)0.0399 (11)0.0325 (11)−0.0102 (9)0.0011 (9)0.0024 (9)
C30.0363 (12)0.0462 (12)0.0270 (10)−0.0058 (10)0.0045 (9)0.0025 (9)
C40.0324 (11)0.0373 (11)0.0309 (11)−0.0074 (9)0.0045 (9)0.0065 (9)
C50.0241 (9)0.0211 (9)0.0346 (10)0.0003 (7)0.0028 (8)−0.0010 (8)
C60.0238 (9)0.0271 (9)0.0313 (10)−0.0006 (8)−0.0001 (8)−0.0017 (8)
C70.0236 (9)0.0252 (9)0.0285 (10)−0.0032 (8)−0.0027 (8)−0.0029 (8)
C80.0228 (9)0.0302 (10)0.0279 (10)0.0004 (8)−0.0020 (8)−0.0016 (8)
C90.0378 (12)0.0332 (10)0.0347 (11)0.0031 (9)0.0020 (9)−0.0045 (9)
C100.0394 (12)0.0484 (13)0.0361 (12)0.0060 (10)0.0077 (10)−0.0077 (10)
C110.0301 (11)0.0539 (13)0.0298 (11)0.0056 (10)0.0046 (9)0.0057 (10)
C120.0290 (11)0.0387 (11)0.0360 (11)0.0038 (9)−0.0013 (9)0.0073 (9)
C130.0279 (10)0.0313 (10)0.0299 (10)0.0036 (8)−0.0031 (8)0.0015 (8)
C140.0251 (9)0.0232 (9)0.0291 (10)−0.0019 (7)−0.0003 (8)0.0024 (8)
C150.0236 (9)0.0229 (9)0.0278 (10)−0.0012 (7)−0.0032 (8)0.0029 (7)
C160.0270 (10)0.0235 (9)0.0253 (10)−0.0024 (7)0.0008 (8)0.0025 (7)
C170.0250 (10)0.0245 (9)0.0343 (11)−0.0001 (8)0.0051 (8)0.0042 (8)
C180.0224 (9)0.0326 (10)0.0345 (11)0.0010 (8)−0.0033 (8)0.0043 (8)
C190.0281 (10)0.0304 (10)0.0279 (10)−0.0015 (8)−0.0024 (8)−0.0010 (8)
C200.0337 (11)0.0473 (12)0.0275 (11)0.0019 (10)−0.0055 (9)−0.0033 (9)
C210.0278 (10)0.0437 (12)0.0458 (13)0.0082 (9)0.0084 (9)0.0084 (10)
Cl1—C111.739 (2)C8—C91.390 (3)
O1—C21.424 (2)C8—C131.395 (3)
O1—C31.426 (2)C9—C101.388 (3)
O2—C51.230 (2)C9—H90.9500
O3—C161.368 (2)C10—C111.380 (3)
O3—C201.423 (2)C10—H100.9500
O4—C171.378 (2)C11—C121.373 (3)
O4—C211.417 (2)C12—C131.390 (3)
N1—C51.351 (2)C12—H120.9500
N1—C41.461 (2)C13—H130.9500
N1—C11.464 (2)C14—C191.390 (3)
C1—C21.505 (3)C14—C151.400 (3)
C1—H1A0.9900C15—C161.376 (3)
C1—H1B0.9900C15—H150.9500
C2—H2A0.9900C16—C171.398 (3)
C2—H2B0.9900C17—C181.383 (3)
C3—C41.505 (3)C18—C191.392 (3)
C3—H3A0.9900C18—H180.9500
C3—H3B0.9900C19—H190.9500
C4—H4A0.9900C20—H20A0.9800
C4—H4B0.9900C20—H20B0.9800
C5—C61.490 (3)C20—H20C0.9800
C6—C71.342 (3)C21—H21A0.9800
C6—H60.9500C21—H21B0.9800
C7—C141.487 (3)C21—H21C0.9800
C7—C81.487 (3)
C2—O1—C3110.32 (15)C8—C9—H9119.5
C16—O3—C20117.63 (15)C11—C10—C9119.3 (2)
C17—O4—C21117.58 (15)C11—C10—H10120.3
C5—N1—C4121.14 (16)C9—C10—H10120.3
C5—N1—C1125.36 (16)C12—C11—C10121.2 (2)
C4—N1—C1113.35 (15)C12—C11—Cl1119.04 (17)
N1—C1—C2109.58 (15)C10—C11—Cl1119.71 (17)
N1—C1—H1A109.8C11—C12—C13119.03 (19)
C2—C1—H1A109.8C11—C12—H12120.5
N1—C1—H1B109.8C13—C12—H12120.5
C2—C1—H1B109.8C12—C13—C8121.15 (19)
H1A—C1—H1B108.2C12—C13—H13119.4
O1—C2—C1111.87 (16)C8—C13—H13119.4
O1—C2—H2A109.2C19—C14—C15117.86 (17)
C1—C2—H2A109.2C19—C14—C7122.03 (17)
O1—C2—H2B109.2C15—C14—C7120.10 (17)
C1—C2—H2B109.2C16—C15—C14121.60 (17)
H2A—C2—H2B107.9C16—C15—H15119.2
O1—C3—C4111.29 (16)C14—C15—H15119.2
O1—C3—H3A109.4O3—C16—C15124.38 (17)
C4—C3—H3A109.4O3—C16—C17115.68 (17)
O1—C3—H3B109.4C15—C16—C17119.94 (17)
C4—C3—H3B109.4O4—C17—C18125.23 (17)
H3A—C3—H3B108.0O4—C17—C16115.56 (17)
N1—C4—C3110.16 (16)C18—C17—C16119.21 (18)
N1—C4—H4A109.6C17—C18—C19120.49 (18)
C3—C4—H4A109.6C17—C18—H18119.8
N1—C4—H4B109.6C19—C18—H18119.8
C3—C4—H4B109.6C14—C19—C18120.89 (18)
H4A—C4—H4B108.1C14—C19—H19119.6
O2—C5—N1121.99 (18)C18—C19—H19119.6
O2—C5—C6121.71 (17)O3—C20—H20A109.5
N1—C5—C6116.24 (16)O3—C20—H20B109.5
C7—C6—C5126.17 (17)H20A—C20—H20B109.5
C7—C6—H6116.9O3—C20—H20C109.5
C5—C6—H6116.9H20A—C20—H20C109.5
C6—C7—C14122.97 (18)H20B—C20—H20C109.5
C6—C7—C8118.35 (17)O4—C21—H21A109.5
C14—C7—C8118.52 (16)O4—C21—H21B109.5
C9—C8—C13118.25 (18)H21A—C21—H21B109.5
C9—C8—C7121.42 (17)O4—C21—H21C109.5
C13—C8—C7120.18 (17)H21A—C21—H21C109.5
C10—C9—C8120.9 (2)H21B—C21—H21C109.5
C10—C9—H9119.5
C5—N1—C1—C2132.71 (19)Cl1—C11—C12—C13−179.22 (15)
C4—N1—C1—C2−51.7 (2)C11—C12—C13—C81.9 (3)
C3—O1—C2—C1−60.0 (2)C9—C8—C13—C12−2.9 (3)
N1—C1—C2—O155.2 (2)C7—C8—C13—C12172.68 (17)
C2—O1—C3—C459.7 (2)C6—C7—C14—C19−139.6 (2)
C5—N1—C4—C3−132.19 (19)C8—C7—C14—C1945.1 (2)
C1—N1—C4—C352.0 (2)C6—C7—C14—C1541.5 (3)
O1—C3—C4—N1−55.3 (2)C8—C7—C14—C15−133.79 (18)
C4—N1—C5—O28.1 (3)C19—C14—C15—C160.5 (3)
C1—N1—C5—O2−176.63 (17)C7—C14—C15—C16179.42 (16)
C4—N1—C5—C6−169.19 (17)C20—O3—C16—C15−2.2 (3)
C1—N1—C5—C66.1 (3)C20—O3—C16—C17178.19 (16)
O2—C5—C6—C750.0 (3)C14—C15—C16—O3−179.46 (17)
N1—C5—C6—C7−132.7 (2)C14—C15—C16—C170.2 (3)
C5—C6—C7—C149.2 (3)C21—O4—C17—C18−8.5 (3)
C5—C6—C7—C8−175.53 (17)C21—O4—C17—C16171.23 (17)
C6—C7—C8—C937.0 (3)O3—C16—C17—O4−0.4 (2)
C14—C7—C8—C9−147.52 (18)C15—C16—C17—O4179.97 (16)
C6—C7—C8—C13−138.47 (19)O3—C16—C17—C18179.34 (16)
C14—C7—C8—C1337.0 (2)C15—C16—C17—C18−0.3 (3)
C13—C8—C9—C101.6 (3)O4—C17—C18—C19179.47 (17)
C7—C8—C9—C10−173.99 (18)C16—C17—C18—C19−0.2 (3)
C8—C9—C10—C110.8 (3)C15—C14—C19—C18−1.0 (3)
C9—C10—C11—C12−1.8 (3)C7—C14—C19—C18−179.93 (17)
C9—C10—C11—Cl1177.89 (16)C17—C18—C19—C140.9 (3)
C10—C11—C12—C130.5 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O2i0.992.533.167 (2)122
C13—H13···O2ii0.952.383.166 (2)140
C20—H20B···O1iii0.982.643.010 (2)103
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1BO2i 0.992.533.167(2)122
C13H13O2ii 0.952.383.166(2)140
C20H20BO1iii 0.982.643.010(2)103

Symmetry codes: (i) ; (ii) ; (iii) .

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