| Literature DB >> 26396875 |
G Kenneth Windler1, Brian L Scott2, Neil C Tomson2, Philip W Leonard1.
Abstract
The title compound, C3H2N4O4, forms crystals with two mol-ecules in the asymmetric unit which are conformationally similar. With the exception of the O atoms of the nitro groups, the mol-ecules are essentially planar. In the crystal, adjacent mol-ecules are associated by N-H⋯N hydrogen bonds involving the imidazole N-H donors and N-atom acceptors of the unsaturated nitro-gen of neighboring rings, forming layers parallel to (010).Entities:
Keywords: 4,5-dinitro-1H-imidazole; crystal structure; hydrogen bonding
Year: 2015 PMID: 26396875 PMCID: PMC4555365 DOI: 10.1107/S2056989015013432
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C3H2N4O4 | |
| Monoclinic, | Melting point = 460–461 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 4868 reflections | |
| θ = 2.9–35.4° | |
| µ = 0.17 mm−1 | |
| β = 107.827 (1)° | |
| Block, colorless | |
| 0.12 × 0.06 × 0.06 mm |
| Bruker D8 Quest with CMOS diffractometer | 4868 independent reflections |
| Radiation source: fine-focus sealed tube | 4216 reflections with |
| Bruker Triumph curved graphite monochromator | |
| ω scans | θmax = 35.4°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 25837 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 4868 reflections | (Δ/σ)max = 0.001 |
| 211 parameters | Δρmax = 0.54 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.29370 (6) | 0.50168 (8) | 0.81909 (6) | 0.01298 (13) | |
| N2 | 0.15331 (6) | 0.38337 (8) | 1.01582 (6) | 0.01315 (13) | |
| N3 | 0.11402 (6) | 0.37089 (8) | 0.70000 (6) | 0.01075 (12) | |
| N4 | 0.01562 (6) | 0.30341 (8) | 0.82719 (6) | 0.01203 (13) | |
| N5 | 0.51594 (6) | 0.79131 (8) | 0.14048 (6) | 0.01209 (13) | |
| N6 | 0.33377 (6) | 0.62492 (8) | 0.27135 (6) | 0.01158 (12) | |
| N7 | 0.31591 (6) | 0.85813 (8) | 0.01033 (6) | 0.01174 (12) | |
| N8 | 0.19372 (6) | 0.75974 (8) | 0.10560 (6) | 0.01083 (12) | |
| O1 | 0.31536 (6) | 0.52596 (8) | 0.72497 (6) | 0.02044 (14) | |
| O2 | 0.35443 (7) | 0.54920 (9) | 0.91643 (6) | 0.02736 (17) | |
| O3 | 0.25949 (6) | 0.41102 (8) | 1.07370 (6) | 0.01982 (14) | |
| O4 | 0.06957 (6) | 0.36304 (9) | 1.05882 (6) | 0.02084 (14) | |
| O5 | 0.55956 (6) | 0.80860 (9) | 0.05851 (6) | 0.02079 (14) | |
| O6 | 0.57642 (6) | 0.78190 (8) | 0.24607 (5) | 0.01798 (13) | |
| O7 | 0.43309 (5) | 0.56137 (7) | 0.30593 (6) | 0.01585 (12) | |
| O8 | 0.24913 (6) | 0.60769 (8) | 0.31361 (6) | 0.01785 (13) | |
| C1 | 0.18544 (7) | 0.41388 (8) | 0.81011 (6) | 0.01016 (13) | |
| C2 | 0.01380 (7) | 0.30381 (9) | 0.71412 (7) | 0.01240 (14) | |
| C3 | 0.12271 (7) | 0.37018 (8) | 0.88769 (6) | 0.01062 (13) | |
| C4 | 0.38434 (7) | 0.78740 (8) | 0.11035 (6) | 0.01003 (13) | |
| C5 | 0.20090 (7) | 0.83961 (9) | 0.01039 (7) | 0.01204 (14) | |
| C6 | 0.31069 (7) | 0.72465 (8) | 0.17067 (6) | 0.00992 (13) | |
| H1 | −0.044 (2) | 0.259 (3) | 0.651 (2) | 0.080* | |
| H2 | 0.129 (2) | 0.386 (3) | 0.630 (2) | 0.080* | |
| H3 | 0.133 (2) | 0.875 (3) | −0.045 (2) | 0.080* | |
| H4 | 0.125 (2) | 0.740 (3) | 0.1274 (19) | 0.080* |
| N1 | 0.0108 (3) | 0.0118 (3) | 0.0163 (3) | −0.0018 (2) | 0.0041 (2) | −0.0016 (2) |
| N2 | 0.0163 (3) | 0.0130 (3) | 0.0101 (3) | 0.0017 (2) | 0.0039 (2) | 0.0008 (2) |
| N3 | 0.0099 (3) | 0.0133 (3) | 0.0102 (3) | −0.0015 (2) | 0.0047 (2) | −0.0021 (2) |
| N4 | 0.0110 (3) | 0.0151 (3) | 0.0109 (3) | −0.0013 (2) | 0.0047 (2) | −0.0008 (2) |
| N5 | 0.0099 (3) | 0.0128 (3) | 0.0138 (3) | −0.0012 (2) | 0.0039 (2) | 0.0000 (2) |
| N6 | 0.0119 (3) | 0.0126 (3) | 0.0100 (3) | −0.0010 (2) | 0.0031 (2) | 0.0009 (2) |
| N7 | 0.0108 (3) | 0.0154 (3) | 0.0098 (3) | 0.0015 (2) | 0.0042 (2) | 0.0018 (2) |
| N8 | 0.0089 (3) | 0.0147 (3) | 0.0096 (3) | 0.0004 (2) | 0.0038 (2) | 0.0005 (2) |
| O1 | 0.0205 (3) | 0.0243 (3) | 0.0221 (3) | −0.0084 (2) | 0.0147 (2) | −0.0065 (2) |
| O2 | 0.0271 (4) | 0.0329 (4) | 0.0170 (3) | −0.0173 (3) | −0.0009 (3) | −0.0019 (3) |
| O3 | 0.0195 (3) | 0.0229 (3) | 0.0135 (3) | −0.0047 (2) | −0.0003 (2) | −0.0017 (2) |
| O4 | 0.0197 (3) | 0.0315 (4) | 0.0139 (3) | 0.0045 (3) | 0.0091 (2) | 0.0044 (2) |
| O5 | 0.0135 (3) | 0.0340 (4) | 0.0182 (3) | −0.0032 (2) | 0.0097 (2) | −0.0037 (2) |
| O6 | 0.0123 (3) | 0.0222 (3) | 0.0156 (3) | −0.0039 (2) | −0.0014 (2) | 0.0056 (2) |
| O7 | 0.0114 (2) | 0.0170 (3) | 0.0171 (3) | 0.0014 (2) | 0.0013 (2) | 0.0044 (2) |
| O8 | 0.0166 (3) | 0.0229 (3) | 0.0173 (3) | 0.0010 (2) | 0.0099 (2) | 0.0062 (2) |
| C1 | 0.0093 (3) | 0.0104 (3) | 0.0113 (3) | −0.0006 (2) | 0.0039 (2) | −0.0013 (2) |
| C2 | 0.0105 (3) | 0.0162 (3) | 0.0118 (3) | −0.0022 (2) | 0.0053 (2) | −0.0021 (2) |
| C3 | 0.0111 (3) | 0.0118 (3) | 0.0093 (3) | 0.0004 (2) | 0.0037 (2) | −0.0004 (2) |
| C4 | 0.0086 (3) | 0.0120 (3) | 0.0097 (3) | 0.0000 (2) | 0.0031 (2) | −0.0006 (2) |
| C5 | 0.0109 (3) | 0.0157 (3) | 0.0100 (3) | 0.0021 (2) | 0.0040 (2) | 0.0016 (2) |
| C6 | 0.0095 (3) | 0.0121 (3) | 0.0080 (3) | 0.0000 (2) | 0.0025 (2) | 0.0005 (2) |
| O1—N1 | 1.2291 (10) | N4—C3 | 1.3530 (11) |
| O2—N1 | 1.2211 (10) | N3—H2 | 0.90 (2) |
| O3—N2 | 1.2256 (10) | N5—C4 | 1.4426 (11) |
| O4—N2 | 1.2299 (10) | N6—C6 | 1.4364 (10) |
| O5—N5 | 1.2274 (10) | N7—C5 | 1.3306 (11) |
| O6—N5 | 1.2297 (9) | N7—C4 | 1.3535 (10) |
| O7—N6 | 1.2230 (10) | N8—C6 | 1.3628 (11) |
| O8—N6 | 1.2299 (10) | N8—C5 | 1.3500 (11) |
| N1—C1 | 1.4404 (11) | N8—H4 | 0.92 (2) |
| N2—C3 | 1.4486 (10) | C1—C3 | 1.3817 (11) |
| N3—C1 | 1.3610 (10) | C2—H1 | 0.92 (2) |
| N3—C2 | 1.3487 (11) | C4—C6 | 1.3771 (11) |
| N4—C2 | 1.3282 (10) | C5—H3 | 0.91 (2) |
| O1—N1—O2 | 125.12 (8) | C6—N8—H4 | 125.6 (14) |
| O1—N1—C1 | 115.84 (7) | N1—C1—C3 | 135.58 (7) |
| O2—N1—C1 | 119.01 (7) | N3—C1—C3 | 105.73 (7) |
| O3—N2—O4 | 124.66 (7) | N1—C1—N3 | 118.30 (6) |
| O3—N2—C3 | 118.67 (7) | N3—C2—N4 | 111.94 (7) |
| O4—N2—C3 | 116.66 (7) | N2—C3—C1 | 131.32 (7) |
| C1—N3—C2 | 106.95 (7) | N4—C3—C1 | 110.21 (6) |
| C2—N4—C3 | 105.15 (7) | N2—C3—N4 | 118.47 (7) |
| C1—N3—H2 | 127.2 (15) | N3—C2—H1 | 121.3 (15) |
| C2—N3—H2 | 125.9 (15) | N4—C2—H1 | 126.7 (15) |
| O5—N5—C4 | 117.25 (7) | N7—C4—C6 | 110.60 (7) |
| O6—N5—C4 | 118.16 (7) | N5—C4—N7 | 119.23 (7) |
| O5—N5—O6 | 124.55 (8) | N5—C4—C6 | 130.13 (7) |
| O8—N6—C6 | 116.27 (7) | N7—C5—N8 | 112.21 (7) |
| O7—N6—C6 | 118.28 (7) | N8—C6—C4 | 105.81 (6) |
| O7—N6—O8 | 125.42 (7) | N6—C6—N8 | 120.37 (7) |
| C4—N7—C5 | 104.72 (7) | N6—C6—C4 | 133.38 (7) |
| C5—N8—C6 | 106.67 (7) | N7—C5—H3 | 126.3 (15) |
| C5—N8—H4 | 127.5 (14) | N8—C5—H3 | 121.5 (15) |
| O1—N1—C1—N3 | −2.71 (11) | O7—N6—C6—N8 | 159.07 (7) |
| O1—N1—C1—C3 | −174.29 (9) | O7—N6—C6—C4 | −12.11 (12) |
| O2—N1—C1—N3 | 175.41 (8) | O8—N6—C6—N8 | −18.96 (10) |
| O2—N1—C1—C3 | 3.83 (14) | O8—N6—C6—C4 | 169.86 (8) |
| O3—N2—C3—N4 | 163.63 (7) | C4—N7—C5—N8 | −0.32 (9) |
| O3—N2—C3—C1 | −15.76 (12) | C5—N7—C4—N5 | −177.47 (7) |
| O4—N2—C3—N4 | −15.16 (11) | C5—N7—C4—C6 | 0.55 (9) |
| O4—N2—C3—C1 | 165.45 (8) | C5—N8—C6—N6 | −173.00 (7) |
| C2—N3—C1—N1 | −174.24 (7) | C5—N8—C6—C4 | 0.35 (8) |
| C2—N3—C1—C3 | −0.35 (8) | C6—N8—C5—N7 | −0.02 (9) |
| C1—N3—C2—N4 | 1.06 (9) | N3—C1—C3—N4 | −0.44 (9) |
| C3—N4—C2—N3 | −1.31 (9) | N1—C1—C3—N2 | −8.71 (15) |
| C2—N4—C3—N2 | −178.45 (7) | N1—C1—C3—N4 | 171.86 (8) |
| C2—N4—C3—C1 | 1.06 (9) | N3—C1—C3—N2 | 178.98 (8) |
| O6—N5—C4—C6 | −25.25 (12) | N5—C4—C6—N6 | −10.74 (14) |
| O5—N5—C4—N7 | −25.48 (11) | N5—C4—C6—N8 | 177.17 (7) |
| O5—N5—C4—C6 | 156.95 (8) | N7—C4—C6—N6 | 171.53 (8) |
| O6—N5—C4—N7 | 152.33 (7) | N7—C4—C6—N8 | −0.57 (8) |
| H··· | ||||
| N3—H2···N7i | 0.90 (2) | 1.96 (2) | 2.836 (1) | 163 (2) |
| N8—H4···N4ii | 0.92 (2) | 1.89 (2) | 2.807 (1) | 179 (3) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N3H2N7i | 0.90(2) | 1.96(2) | 2.836(1) | 163(2) |
| N8H4N4ii | 0.92(2) | 1.89(2) | 2.807(1) | 179(3) |
Symmetry codes: (i) ; (ii) .