Literature DB >> 26396875

Crystal structure of 4,5-di-nitro-1H-imidazole.

G Kenneth Windler1, Brian L Scott2, Neil C Tomson2, Philip W Leonard1.   

Abstract

The title compound, C3H2N4O4, forms crystals with two mol-ecules in the asymmetric unit which are conformationally similar. With the exception of the O atoms of the nitro groups, the mol-ecules are essentially planar. In the crystal, adjacent mol-ecules are associated by N-H⋯N hydrogen bonds involving the imidazole N-H donors and N-atom acceptors of the unsaturated nitro-gen of neighboring rings, forming layers parallel to (010).

Entities:  

Keywords:  4,5-di­nitro-1H-imidazole; crystal structure; hydrogen bonding

Year:  2015        PMID: 26396875      PMCID: PMC4555365          DOI: 10.1107/S2056989015013432

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to imidazoles and the title compound, see: Windaus & Vogt (1907 ▸); Cooper (1996 ▸); Epishina et al. (1967 ▸). For the preparation, see: Novikov et al. (1970 ▸). For similar structures, see: Parrish et al. (2015 ▸); Windler et al. (2015 ▸).

Experimental

Crystal data

C3H2N4O4 M = 158.09 Monoclinic, a = 11.4797 (9) Å b = 8.8205 (7) Å c = 11.802 (1) Å β = 107.827 (1)° V = 1137.65 (16) Å3 Z = 8 Mo Kα radiation μ = 0.17 mm−1 T = 100 K 0.12 × 0.06 × 0.06 mm

Data collection

Bruker D8 Quest with CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.971, T max = 0.995 25837 measured reflections 4868 independent reflections 4216 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.118 S = 1.60 4868 reflections 211 parameters All H-atom parameters refined Δρmax = 0.54 e Å−3 Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: CHEMDRAW Ultra (Cambridge Soft, 2014 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015013432/zs2338sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013432/zs2338Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013432/zs2338Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013432/zs2338Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015013432/zs2338fig1.tif The mol­ecular structure of the title compound with atom labeling. Ellipsoids are drawn at the 50% probability level and the hydrogen atoms are drawn as spheres of arbitrary size. Click here for additional data file. b . DOI: 10.1107/S2056989015013432/zs2338fig2.tif A crystal packing diagram for the title compound viewed along the b axis. The N—H⋯N hydrogen bonds are shown as dashed lines. CCDC reference: 1412685 Additional supporting information: crystallographic information; 3D view; checkCIF report
C3H2N4O4F(000) = 640
Mr = 158.09Dx = 1.846 Mg m3
Monoclinic, P21/nMelting point = 460–461 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 11.4797 (9) ÅCell parameters from 4868 reflections
b = 8.8205 (7) Åθ = 2.9–35.4°
c = 11.802 (1) ŵ = 0.17 mm1
β = 107.827 (1)°T = 100 K
V = 1137.65 (16) Å3Block, colorless
Z = 80.12 × 0.06 × 0.06 mm
Bruker D8 Quest with CMOS diffractometer4868 independent reflections
Radiation source: fine-focus sealed tube4216 reflections with I > 2σ(I)
Bruker Triumph curved graphite monochromatorRint = 0.024
ω scansθmax = 35.4°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→18
Tmin = 0.971, Tmax = 0.995k = −14→13
25837 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118All H-atom parameters refined
S = 1.60w = 1/[σ2(Fo2) + (0.0548P)2] where P = (Fo2 + 2Fc2)/3
4868 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.29370 (6)0.50168 (8)0.81909 (6)0.01298 (13)
N20.15331 (6)0.38337 (8)1.01582 (6)0.01315 (13)
N30.11402 (6)0.37089 (8)0.70000 (6)0.01075 (12)
N40.01562 (6)0.30341 (8)0.82719 (6)0.01203 (13)
N50.51594 (6)0.79131 (8)0.14048 (6)0.01209 (13)
N60.33377 (6)0.62492 (8)0.27135 (6)0.01158 (12)
N70.31591 (6)0.85813 (8)0.01033 (6)0.01174 (12)
N80.19372 (6)0.75974 (8)0.10560 (6)0.01083 (12)
O10.31536 (6)0.52596 (8)0.72497 (6)0.02044 (14)
O20.35443 (7)0.54920 (9)0.91643 (6)0.02736 (17)
O30.25949 (6)0.41102 (8)1.07370 (6)0.01982 (14)
O40.06957 (6)0.36304 (9)1.05882 (6)0.02084 (14)
O50.55956 (6)0.80860 (9)0.05851 (6)0.02079 (14)
O60.57642 (6)0.78190 (8)0.24607 (5)0.01798 (13)
O70.43309 (5)0.56137 (7)0.30593 (6)0.01585 (12)
O80.24913 (6)0.60769 (8)0.31361 (6)0.01785 (13)
C10.18544 (7)0.41388 (8)0.81011 (6)0.01016 (13)
C20.01380 (7)0.30381 (9)0.71412 (7)0.01240 (14)
C30.12271 (7)0.37018 (8)0.88769 (6)0.01062 (13)
C40.38434 (7)0.78740 (8)0.11035 (6)0.01003 (13)
C50.20090 (7)0.83961 (9)0.01039 (7)0.01204 (14)
C60.31069 (7)0.72465 (8)0.17067 (6)0.00992 (13)
H1−0.044 (2)0.259 (3)0.651 (2)0.080*
H20.129 (2)0.386 (3)0.630 (2)0.080*
H30.133 (2)0.875 (3)−0.045 (2)0.080*
H40.125 (2)0.740 (3)0.1274 (19)0.080*
U11U22U33U12U13U23
N10.0108 (3)0.0118 (3)0.0163 (3)−0.0018 (2)0.0041 (2)−0.0016 (2)
N20.0163 (3)0.0130 (3)0.0101 (3)0.0017 (2)0.0039 (2)0.0008 (2)
N30.0099 (3)0.0133 (3)0.0102 (3)−0.0015 (2)0.0047 (2)−0.0021 (2)
N40.0110 (3)0.0151 (3)0.0109 (3)−0.0013 (2)0.0047 (2)−0.0008 (2)
N50.0099 (3)0.0128 (3)0.0138 (3)−0.0012 (2)0.0039 (2)0.0000 (2)
N60.0119 (3)0.0126 (3)0.0100 (3)−0.0010 (2)0.0031 (2)0.0009 (2)
N70.0108 (3)0.0154 (3)0.0098 (3)0.0015 (2)0.0042 (2)0.0018 (2)
N80.0089 (3)0.0147 (3)0.0096 (3)0.0004 (2)0.0038 (2)0.0005 (2)
O10.0205 (3)0.0243 (3)0.0221 (3)−0.0084 (2)0.0147 (2)−0.0065 (2)
O20.0271 (4)0.0329 (4)0.0170 (3)−0.0173 (3)−0.0009 (3)−0.0019 (3)
O30.0195 (3)0.0229 (3)0.0135 (3)−0.0047 (2)−0.0003 (2)−0.0017 (2)
O40.0197 (3)0.0315 (4)0.0139 (3)0.0045 (3)0.0091 (2)0.0044 (2)
O50.0135 (3)0.0340 (4)0.0182 (3)−0.0032 (2)0.0097 (2)−0.0037 (2)
O60.0123 (3)0.0222 (3)0.0156 (3)−0.0039 (2)−0.0014 (2)0.0056 (2)
O70.0114 (2)0.0170 (3)0.0171 (3)0.0014 (2)0.0013 (2)0.0044 (2)
O80.0166 (3)0.0229 (3)0.0173 (3)0.0010 (2)0.0099 (2)0.0062 (2)
C10.0093 (3)0.0104 (3)0.0113 (3)−0.0006 (2)0.0039 (2)−0.0013 (2)
C20.0105 (3)0.0162 (3)0.0118 (3)−0.0022 (2)0.0053 (2)−0.0021 (2)
C30.0111 (3)0.0118 (3)0.0093 (3)0.0004 (2)0.0037 (2)−0.0004 (2)
C40.0086 (3)0.0120 (3)0.0097 (3)0.0000 (2)0.0031 (2)−0.0006 (2)
C50.0109 (3)0.0157 (3)0.0100 (3)0.0021 (2)0.0040 (2)0.0016 (2)
C60.0095 (3)0.0121 (3)0.0080 (3)0.0000 (2)0.0025 (2)0.0005 (2)
O1—N11.2291 (10)N4—C31.3530 (11)
O2—N11.2211 (10)N3—H20.90 (2)
O3—N21.2256 (10)N5—C41.4426 (11)
O4—N21.2299 (10)N6—C61.4364 (10)
O5—N51.2274 (10)N7—C51.3306 (11)
O6—N51.2297 (9)N7—C41.3535 (10)
O7—N61.2230 (10)N8—C61.3628 (11)
O8—N61.2299 (10)N8—C51.3500 (11)
N1—C11.4404 (11)N8—H40.92 (2)
N2—C31.4486 (10)C1—C31.3817 (11)
N3—C11.3610 (10)C2—H10.92 (2)
N3—C21.3487 (11)C4—C61.3771 (11)
N4—C21.3282 (10)C5—H30.91 (2)
O1—N1—O2125.12 (8)C6—N8—H4125.6 (14)
O1—N1—C1115.84 (7)N1—C1—C3135.58 (7)
O2—N1—C1119.01 (7)N3—C1—C3105.73 (7)
O3—N2—O4124.66 (7)N1—C1—N3118.30 (6)
O3—N2—C3118.67 (7)N3—C2—N4111.94 (7)
O4—N2—C3116.66 (7)N2—C3—C1131.32 (7)
C1—N3—C2106.95 (7)N4—C3—C1110.21 (6)
C2—N4—C3105.15 (7)N2—C3—N4118.47 (7)
C1—N3—H2127.2 (15)N3—C2—H1121.3 (15)
C2—N3—H2125.9 (15)N4—C2—H1126.7 (15)
O5—N5—C4117.25 (7)N7—C4—C6110.60 (7)
O6—N5—C4118.16 (7)N5—C4—N7119.23 (7)
O5—N5—O6124.55 (8)N5—C4—C6130.13 (7)
O8—N6—C6116.27 (7)N7—C5—N8112.21 (7)
O7—N6—C6118.28 (7)N8—C6—C4105.81 (6)
O7—N6—O8125.42 (7)N6—C6—N8120.37 (7)
C4—N7—C5104.72 (7)N6—C6—C4133.38 (7)
C5—N8—C6106.67 (7)N7—C5—H3126.3 (15)
C5—N8—H4127.5 (14)N8—C5—H3121.5 (15)
O1—N1—C1—N3−2.71 (11)O7—N6—C6—N8159.07 (7)
O1—N1—C1—C3−174.29 (9)O7—N6—C6—C4−12.11 (12)
O2—N1—C1—N3175.41 (8)O8—N6—C6—N8−18.96 (10)
O2—N1—C1—C33.83 (14)O8—N6—C6—C4169.86 (8)
O3—N2—C3—N4163.63 (7)C4—N7—C5—N8−0.32 (9)
O3—N2—C3—C1−15.76 (12)C5—N7—C4—N5−177.47 (7)
O4—N2—C3—N4−15.16 (11)C5—N7—C4—C60.55 (9)
O4—N2—C3—C1165.45 (8)C5—N8—C6—N6−173.00 (7)
C2—N3—C1—N1−174.24 (7)C5—N8—C6—C40.35 (8)
C2—N3—C1—C3−0.35 (8)C6—N8—C5—N7−0.02 (9)
C1—N3—C2—N41.06 (9)N3—C1—C3—N4−0.44 (9)
C3—N4—C2—N3−1.31 (9)N1—C1—C3—N2−8.71 (15)
C2—N4—C3—N2−178.45 (7)N1—C1—C3—N4171.86 (8)
C2—N4—C3—C11.06 (9)N3—C1—C3—N2178.98 (8)
O6—N5—C4—C6−25.25 (12)N5—C4—C6—N6−10.74 (14)
O5—N5—C4—N7−25.48 (11)N5—C4—C6—N8177.17 (7)
O5—N5—C4—C6156.95 (8)N7—C4—C6—N6171.53 (8)
O6—N5—C4—N7152.33 (7)N7—C4—C6—N8−0.57 (8)
D—H···AD—HH···AD···AD—H···A
N3—H2···N7i0.90 (2)1.96 (2)2.836 (1)163 (2)
N8—H4···N4ii0.92 (2)1.89 (2)2.807 (1)179 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H2N7i 0.90(2)1.96(2)2.836(1)163(2)
N8H4N4ii 0.92(2)1.89(2)2.807(1)179(3)

Symmetry codes: (i) ; (ii) .

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