Literature DB >> 26396828

Crystal structure of ethyl 2-amino-4-(4-chloro-phen-yl)-4H-1-benzothieno[3,2-b]pyran-3-carboxyl-ate.

Mohamed Bakhouch1, Asmae Mahfoud1, Mohamed El Yazidi1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

The title compound, C20H16ClNO3S, is built up from three fused rings, one five- and two six-membered rings, linked to a 3-eth-oxy-carbonyl group and to a 4-chloro-phenyl ring. The hydropyran ring has a flattened envelope conformation, with the C atom substituted by the 4-chloro-phenyl ring as the flap (displaced by 0.077 (2) Å from the plane through the other atoms). The fused three-ring system is quasi-planar (r.m.s. deviation = 0.057 Å), with the largest deviation from the mean plane being 0.106 (1) Å for the C atom substituted by the 4-chloro-phenyl ring. The 4-chloro-phenyl ring is approximately perpendicular to the mean plane of the fused ring system, as indicated by the dihedral angle of 77.32 (6)° between their mean planes. There is an intra-molecular N-H⋯O hydrogen bond forming an S(6) ring motif. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(12) ring motif. There are also short inter-molecular Cl⋯O inter-actions present [3.1226 (12) Å] between neighbouring mol-ecules.

Entities:  

Keywords:  Cl⋯O short contact.; N—H⋯O hydrogen bonds; benzothieno­pyran; crystal structure; inversion dimers; thio­aurones; thio­phenones

Year:  2015        PMID: 26396828      PMCID: PMC4571428          DOI: 10.1107/S2056989015014085

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the reactivity of the thio­aurones [(Z)-2-aryl­idene­benzo[b]thio­phen-3(2H)-ones], see: Boughaleb et al. (2010 ▸, 2011 ▸); Bakhouch et al. (2014 ▸, 2015 ▸); Cabiddu et al. (2002 ▸); Pradhan et al. (2005 ▸). For the preparation of the title compound using condensation reactions, see: Daisley et al. (1982 ▸).

Experimental

Crystal data

C20H16ClNO3S M = 385.85 Triclinic, a = 8.3606 (4) Å b = 10.9186 (6) Å c = 11.0971 (6) Å α = 104.592 (2)° β = 106.849 (2)° γ = 102.174 (2)° V = 893.09 (8) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 296 K 0.42 × 0.31 × 0.26 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.673, T max = 0.746 22918 measured reflections 3892 independent reflections 3422 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.097 S = 1.04 3892 reflections 235 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL2013, PLATON and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015014085/su5182sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014085/su5182Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014085/su5182Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015014085/su5182fig1.tif A view of the mol­ecule structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intra­molecular N-H⋯O hydrogen bond is shown as a dashed line (see Table 1). Click here for additional data file. a . DOI: 10.1107/S2056989015014085/su5182fig2.tif A view along the a axis of the crystal packing for the title compound. The hydrogen bonds are shown as dashed lines (see Table 1), and C-bound H atoms have been omitted for clarity. CCDC reference: 1415291 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H16ClNO3SZ = 2
Mr = 385.85F(000) = 400
Triclinic, P1Dx = 1.435 Mg m3
a = 8.3606 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.9186 (6) ÅCell parameters from 3892 reflections
c = 11.0971 (6) Åθ = 2.3–27.0°
α = 104.592 (2)°µ = 0.35 mm1
β = 106.849 (2)°T = 296 K
γ = 102.174 (2)°Block, colourless
V = 893.09 (8) Å30.42 × 0.31 × 0.26 mm
Bruker X8 APEX diffractometer3892 independent reflections
Radiation source: fine-focus sealed tube3422 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.673, Tmax = 0.746k = −13→13
22918 measured reflectionsl = −14→14
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0548P)2 + 0.2464P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3892 reflectionsΔρmax = 0.30 e Å3
235 parametersΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.35626 (19)0.05325 (15)0.88366 (15)0.0351 (3)
C20.2174 (2)0.01998 (18)0.92720 (18)0.0471 (4)
H20.21280.07691.00330.057*
C30.0882 (2)−0.0988 (2)0.85487 (19)0.0542 (4)
H3−0.0054−0.12230.88240.065*
C40.0936 (2)−0.1852 (2)0.74085 (19)0.0539 (4)
H40.0034−0.26480.69310.065*
C50.2317 (2)−0.15375 (17)0.69832 (16)0.0432 (4)
H50.2359−0.21200.62290.052*
C60.36455 (18)−0.03341 (14)0.77004 (14)0.0325 (3)
C70.51995 (18)0.02422 (13)0.74848 (13)0.0296 (3)
C80.62124 (18)0.14449 (13)0.83590 (13)0.0294 (3)
C90.78415 (17)0.22422 (13)0.82693 (13)0.0281 (3)
H90.88040.25150.91310.034*
C100.82868 (17)0.13392 (13)0.72085 (13)0.0298 (3)
C110.71717 (18)0.01172 (13)0.63660 (13)0.0298 (3)
C120.75379 (16)0.34879 (13)0.79785 (13)0.0274 (3)
C130.7782 (2)0.46098 (14)0.90231 (14)0.0354 (3)
H130.82170.46170.98980.042*
C140.7389 (2)0.57212 (14)0.87879 (15)0.0385 (3)
H140.75400.64620.94940.046*
C150.67728 (18)0.57080 (13)0.74900 (15)0.0346 (3)
C160.6569 (2)0.46233 (15)0.64347 (15)0.0396 (3)
H160.61910.46370.55640.047*
C170.69348 (19)0.35146 (14)0.66880 (14)0.0349 (3)
H170.67720.27740.59770.042*
C180.99172 (18)0.18273 (14)0.70204 (14)0.0338 (3)
C191.2395 (2)0.37234 (19)0.76685 (18)0.0508 (4)
H19A1.29330.30860.73120.061*
H19B1.32630.43650.85010.061*
C201.1832 (4)0.4415 (3)0.6705 (3)0.1006 (10)
H20A1.28330.48640.65510.151*
H20B1.13100.50520.70630.151*
H20C1.09890.37770.58770.151*
N10.74061 (17)−0.07170 (12)0.53678 (13)0.0404 (3)
H1A0.8348−0.05020.51990.048*
H1B0.6615−0.14690.48940.048*
O10.55816 (13)−0.04447 (10)0.64299 (10)0.0341 (2)
O21.09024 (13)0.30414 (11)0.79199 (11)0.0412 (3)
O31.03951 (15)0.12634 (12)0.61632 (12)0.0503 (3)
S10.53387 (5)0.19821 (4)0.95704 (4)0.03808 (12)
Cl10.62208 (6)0.70800 (4)0.71743 (4)0.05029 (13)
U11U22U33U12U13U23
C10.0365 (7)0.0397 (7)0.0395 (7)0.0175 (6)0.0224 (6)0.0158 (6)
C20.0454 (9)0.0575 (10)0.0523 (9)0.0213 (8)0.0346 (8)0.0170 (8)
C30.0390 (9)0.0698 (12)0.0624 (11)0.0136 (8)0.0341 (8)0.0206 (9)
C40.0365 (8)0.0595 (11)0.0591 (11)0.0042 (8)0.0223 (8)0.0119 (9)
C50.0378 (8)0.0492 (9)0.0420 (8)0.0101 (7)0.0203 (7)0.0099 (7)
C60.0316 (7)0.0393 (7)0.0351 (7)0.0159 (6)0.0179 (6)0.0158 (6)
C70.0324 (7)0.0354 (7)0.0311 (6)0.0175 (5)0.0190 (5)0.0131 (5)
C80.0348 (7)0.0329 (7)0.0307 (6)0.0173 (5)0.0202 (5)0.0121 (5)
C90.0306 (6)0.0313 (6)0.0270 (6)0.0136 (5)0.0150 (5)0.0087 (5)
C100.0312 (7)0.0333 (7)0.0335 (7)0.0163 (5)0.0192 (5)0.0116 (5)
C110.0336 (7)0.0330 (7)0.0331 (6)0.0172 (5)0.0198 (5)0.0133 (5)
C120.0250 (6)0.0296 (6)0.0292 (6)0.0092 (5)0.0134 (5)0.0076 (5)
C130.0428 (8)0.0348 (7)0.0273 (6)0.0137 (6)0.0131 (6)0.0063 (5)
C140.0444 (8)0.0291 (7)0.0364 (7)0.0118 (6)0.0135 (6)0.0023 (6)
C150.0305 (7)0.0283 (7)0.0430 (8)0.0097 (5)0.0104 (6)0.0113 (6)
C160.0444 (8)0.0427 (8)0.0309 (7)0.0170 (7)0.0100 (6)0.0123 (6)
C170.0405 (8)0.0347 (7)0.0280 (6)0.0148 (6)0.0122 (6)0.0053 (5)
C180.0327 (7)0.0387 (7)0.0360 (7)0.0155 (6)0.0183 (6)0.0115 (6)
C190.0330 (8)0.0570 (10)0.0541 (10)0.0021 (7)0.0224 (7)0.0070 (8)
C200.0660 (15)0.115 (2)0.130 (2)0.0027 (15)0.0361 (16)0.078 (2)
N10.0442 (7)0.0356 (6)0.0458 (7)0.0121 (5)0.0308 (6)0.0040 (5)
O10.0347 (5)0.0343 (5)0.0358 (5)0.0099 (4)0.0222 (4)0.0054 (4)
O20.0327 (5)0.0451 (6)0.0417 (6)0.0059 (4)0.0211 (5)0.0039 (5)
O30.0465 (6)0.0504 (7)0.0569 (7)0.0128 (5)0.0373 (6)0.0029 (5)
S10.0447 (2)0.0385 (2)0.0392 (2)0.01531 (16)0.02879 (17)0.00859 (15)
Cl10.0518 (2)0.0325 (2)0.0608 (3)0.01558 (17)0.00947 (19)0.01663 (18)
C1—C21.396 (2)C12—C171.3837 (19)
C1—C61.4025 (19)C12—C131.3885 (18)
C1—S11.7412 (16)C13—C141.388 (2)
C2—C31.369 (3)C13—H130.9300
C2—H20.9300C14—C151.377 (2)
C3—C41.394 (3)C14—H140.9300
C3—H30.9300C15—C161.380 (2)
C4—C51.379 (2)C15—Cl11.7441 (14)
C4—H40.9300C16—C171.384 (2)
C5—C61.393 (2)C16—H160.9300
C5—H50.9300C17—H170.9300
C6—C71.4327 (18)C18—O31.2134 (17)
C7—C81.340 (2)C18—O21.3521 (18)
C7—O11.3821 (15)C19—O21.4507 (18)
C8—C91.4983 (18)C19—C201.484 (3)
C8—S11.7428 (13)C19—H19A0.9700
C9—C101.5235 (16)C19—H19B0.9700
C9—C121.5289 (17)C20—H20A0.9600
C9—H90.9800C20—H20B0.9600
C10—C111.366 (2)C20—H20C0.9600
C10—C181.4492 (19)N1—H1A0.8600
C11—N11.3371 (17)N1—H1B0.8600
C11—O11.3717 (16)
C2—C1—C6120.93 (15)C13—C12—C9119.77 (12)
C2—C1—S1126.81 (13)C14—C13—C12121.31 (13)
C6—C1—S1112.26 (10)C14—C13—H13119.3
C3—C2—C1118.18 (15)C12—C13—H13119.3
C3—C2—H2120.9C15—C14—C13118.84 (13)
C1—C2—H2120.9C15—C14—H14120.6
C2—C3—C4121.53 (15)C13—C14—H14120.6
C2—C3—H3119.2C14—C15—C16121.13 (13)
C4—C3—H3119.2C14—C15—Cl1119.42 (11)
C5—C4—C3120.57 (17)C16—C15—Cl1119.45 (11)
C5—C4—H4119.7C15—C16—C17119.13 (13)
C3—C4—H4119.7C15—C16—H16120.4
C4—C5—C6118.99 (15)C17—C16—H16120.4
C4—C5—H5120.5C12—C17—C16121.25 (13)
C6—C5—H5120.5C12—C17—H17119.4
C5—C6—C1119.78 (13)C16—C17—H17119.4
C5—C6—C7130.77 (13)O3—C18—O2121.50 (13)
C1—C6—C7109.45 (13)O3—C18—C10126.35 (14)
C8—C7—O1124.03 (12)O2—C18—C10112.14 (11)
C8—C7—C6115.98 (12)O2—C19—C20110.42 (16)
O1—C7—C6119.99 (12)O2—C19—H19A109.6
C7—C8—C9124.22 (11)C20—C19—H19A109.6
C7—C8—S1111.10 (10)O2—C19—H19B109.6
C9—C8—S1124.64 (10)C20—C19—H19B109.6
C8—C9—C10107.59 (11)H19A—C19—H19B108.1
C8—C9—C12109.14 (10)C19—C20—H20A109.5
C10—C9—C12113.90 (10)C19—C20—H20B109.5
C8—C9—H9108.7H20A—C20—H20B109.5
C10—C9—H9108.7C19—C20—H20C109.5
C12—C9—H9108.7H20A—C20—H20C109.5
C11—C10—C18118.03 (12)H20B—C20—H20C109.5
C11—C10—C9123.05 (11)C11—N1—H1A120.0
C18—C10—C9118.79 (12)C11—N1—H1B120.0
N1—C11—C10127.48 (13)H1A—N1—H1B120.0
N1—C11—O1108.97 (12)C11—O1—C7116.36 (11)
C10—C11—O1123.55 (11)C18—O2—C19116.32 (11)
C17—C12—C13118.29 (12)C1—S1—C891.21 (7)
C17—C12—C9121.86 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.862.072.6796 (18)127
N1—H1A···O3i0.862.182.8956 (15)141
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1AO30.862.072.6796(18)127
N1H1AO3i 0.862.182.8956(15)141

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-amino-4-(3-nitro-phen-yl)-4H-1-benzothieno[3,2-b]pyran-3-carboxyl-ate.

Authors:  Mohamed Bakhouch; Ghali Al Houari; Mohamed El Yazidi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-18

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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