Literature DB >> 26396824

Crystal structure of 1-(2,4-dihy-droxy-6-methyl-phen-yl)ethanone.

Samran Prabpai1, Palangpon Kongsaeree1.   

Abstract

The title compound, C9H10O3, is a bioactive secondary metabolite, isolated from the endophytic fungus Nodulisporium sp. The compound exhibits an intra-molecular O-H⋯O hydrogen bond between the phenolic H atom and the carbonyl O atom of the adjacent acetyl group. In the crystal, mol-ecules are linked by hydrogen bonds involving the 4-phenolic H atom and a symmetry-related carbonyl O atom of a neighboring mol-ecule, resulting in extended supra-molecular chains along the a-axis direction. Aromatic π-π stacking inter-actions between the nearly parallel benzene rings of adjacent chains [centroid-centroid distance = 3.7478 (8) Å] further stabilize the three-dimensional supra-molecular framework.

Entities:  

Keywords:  1-(2,4-dihy­droxy-6-methyl­phen­yl)ethanone; bioactive secondary metabolite; crystal structure; hydrogen bonding; π–π stacking

Year:  2015        PMID: 26396824      PMCID: PMC4571424          DOI: 10.1107/S2056989015013468

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological activities of aceto­phenone derivatives, see: Das & Khosla (2009 ▸); Suzuki et al. (2006 ▸); Tabuchi et al. (2014 ▸). For related structures, see: Azeezaa et al. (2009 ▸); Chakkaravarthi et al. (2007 ▸); Hill et al. (2012 ▸).

Experimental

Crystal data

C9H10O3 M = 166.17 Monoclinic, a = 7.3570 (3) Å b = 15.001 (1) Å c = 7.3180 (5) Å β = 91.017 (4)° V = 807.50 (8) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.25 × 0.25 × 0.25 mm

Data collection

Nonius KappaCCD diffractometer 3260 measured reflections 1828 independent reflections 1319 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.150 S = 1.03 1828 reflections 114 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.17 e Å−3

Data collection: COLLECT (Nonius, 2000 ▸); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▸); data reduction: DENZO (Otwinowski & Minor, 1997 ▸) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015013468/xu5859sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013468/xu5859Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013468/xu5859Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015013468/xu5859fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015013468/xu5859fig2.tif The partial packing diagram shows layers of mol­ecules built up by bifurcated O—H⋯O hydrogen bonds and π–π inter­molecular inter­actions between phenyl rings. CCDC reference: 1412605 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H10O3F(000) = 352
Mr = 166.17Dx = 1.367 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.3570 (3) ÅCell parameters from 1754 reflections
b = 15.001 (1) Åθ = 1.0–27.5°
c = 7.3180 (5) ŵ = 0.10 mm1
β = 91.017 (4)°T = 298 K
V = 807.50 (8) Å3Block, yellow
Z = 40.25 × 0.25 × 0.25 mm
Nonius KappaCCD diffractometer1319 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.1°
CCD scansh = −9→9
3260 measured reflectionsk = −17→19
1828 independent reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0739P)2 + 0.1187P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1828 reflectionsΔρmax = 0.22 e Å3
114 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL2013 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.06 (2)
Geometry. All e.s.d.'s(except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.70787 (19)0.22482 (9)0.77437 (17)0.0385 (4)
C20.70538 (18)0.32006 (10)0.77086 (18)0.0407 (4)
C30.8510 (2)0.37042 (10)0.83381 (19)0.0436 (4)
H30.84410.43810.83260.052*
C41.00510 (19)0.32826 (10)0.89794 (19)0.0447 (4)
C51.0142 (2)0.23520 (10)0.9001 (2)0.0446 (4)
H51.13200.20210.94100.053*
C60.87053 (19)0.18331 (10)0.84171 (17)0.0416 (4)
C70.5457 (2)0.17763 (10)0.70990 (19)0.0456 (4)
C80.5184 (3)0.07921 (13)0.7285 (3)0.0776 (6)
H8A0.60440.04830.65440.116*
H8B0.39720.06400.68910.116*
H8C0.53600.06220.85410.116*
O90.41657 (15)0.21912 (7)0.63688 (18)0.0588 (4)
O100.55972 (15)0.36627 (7)0.70969 (17)0.0552 (4)
H100.48300.33160.66880.083*
O111.14661 (16)0.37918 (8)0.95736 (18)0.0631 (4)
H111.22560.34711.00260.095*
C120.9014 (3)0.08414 (11)0.8510 (2)0.0607 (5)
H12A0.81650.05800.93350.073*
H12B1.02310.07250.89400.073*
H12C0.88420.05880.73150.073*
U11U22U33U12U13U23
C10.0408 (8)0.0373 (8)0.0373 (7)0.0021 (6)−0.0033 (6)0.0009 (5)
C20.0384 (7)0.0409 (8)0.0426 (7)0.0061 (6)−0.0036 (5)0.0034 (6)
C30.0438 (8)0.0373 (8)0.0496 (8)0.0011 (6)−0.0048 (6)0.0029 (6)
C40.0404 (8)0.0485 (9)0.0449 (8)−0.0015 (6)−0.0053 (6)0.0013 (6)
C50.0402 (8)0.0481 (9)0.0452 (8)0.0092 (6)−0.0059 (6)0.0017 (6)
C60.0464 (8)0.0393 (8)0.0390 (7)0.0068 (6)−0.0027 (6)0.0024 (5)
C70.0462 (8)0.0469 (9)0.0436 (8)−0.0020 (7)−0.0047 (6)0.0001 (6)
C80.0771 (13)0.0495 (11)0.1050 (15)−0.0156 (9)−0.0344 (11)0.0089 (10)
O90.0443 (7)0.0558 (7)0.0756 (8)−0.0015 (5)−0.0172 (5)0.0004 (5)
O100.0447 (7)0.0420 (6)0.0782 (8)0.0077 (5)−0.0177 (5)0.0043 (5)
O110.0475 (7)0.0556 (7)0.0853 (9)−0.0071 (5)−0.0213 (6)0.0027 (6)
C120.0671 (11)0.0429 (9)0.0717 (11)0.0126 (8)−0.0123 (8)0.0029 (8)
C1—C61.4288 (18)C6—C121.506 (2)
C1—C21.429 (2)C7—O91.2481 (18)
C1—C71.4585 (19)C7—C81.497 (2)
C2—O101.3462 (16)C8—H8A0.9600
C2—C31.3831 (19)C8—H8B0.9600
C3—C41.374 (2)C8—H8C0.9600
C3—H31.0170O10—H100.8200
C4—O111.3566 (18)O11—H110.8200
C4—C51.398 (2)C12—H12A0.9600
C5—C61.375 (2)C12—H12B0.9600
C5—H51.0380C12—H12C0.9600
C6—C1—C2116.89 (13)O9—C7—C1120.57 (14)
C6—C1—C7125.12 (13)O9—C7—C8115.38 (14)
C2—C1—C7117.99 (12)C1—C7—C8124.04 (14)
O10—C2—C3115.89 (13)C7—C8—H8A109.5
O10—C2—C1122.05 (13)C7—C8—H8B109.5
C3—C2—C1122.04 (12)H8A—C8—H8B109.5
C4—C3—C2119.47 (14)C7—C8—H8C109.5
C4—C3—H3120.3H8A—C8—H8C109.5
C2—C3—H3120.3H8B—C8—H8C109.5
O11—C4—C3118.31 (14)C2—O10—H10109.5
O11—C4—C5121.49 (13)C4—O11—H11109.5
C3—C4—C5120.19 (13)C6—C12—H12A109.5
C6—C5—C4121.71 (13)C6—C12—H12B109.5
C6—C5—H5116.9H12A—C12—H12B109.5
C4—C5—H5121.4C6—C12—H12C109.5
C5—C6—C1119.68 (13)H12A—C12—H12C109.5
C5—C6—C12115.52 (13)H12B—C12—H12C109.5
C1—C6—C12124.79 (14)
C6—C1—C2—O10179.79 (12)C4—C5—C6—C10.9 (2)
C7—C1—C2—O10−0.3 (2)C4—C5—C6—C12179.57 (14)
C6—C1—C2—C3−1.66 (19)C2—C1—C6—C50.41 (19)
C7—C1—C2—C3178.24 (13)C7—C1—C6—C5−179.48 (13)
O10—C2—C3—C4−179.77 (13)C2—C1—C6—C12−178.14 (14)
C1—C2—C3—C41.6 (2)C7—C1—C6—C122.0 (2)
C2—C3—C4—O11179.41 (13)C6—C1—C7—O9−172.96 (13)
C2—C3—C4—C5−0.2 (2)C2—C1—C7—O97.2 (2)
O11—C4—C5—C6179.36 (14)C6—C1—C7—C88.5 (2)
C3—C4—C5—C6−1.0 (2)C2—C1—C7—C8−171.41 (16)
D—H···AD—HH···AD···AD—H···A
O10—H10···O90.821.772.4991 (16)147
O11—H11···O9i0.821.972.7843 (16)173
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O10H10O90.821.772.4991(16)147
O11H11O9i 0.821.972.7843(16)173

Symmetry code: (i) .

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Authors:  Abhirup Das; Chaitan Khosla
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  1-(3-Benzyl-4,6-dibenz-yloxy-2-hy-droxy-phen-yl)ethanone.

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