| Literature DB >> 26396824 |
Samran Prabpai1, Palangpon Kongsaeree1.
Abstract
The title compound, C9H10O3, is a bioactive secondary metabolite, isolated from the endophytic fungus Nodulisporium sp. The compound exhibits an intra-molecular O-H⋯O hydrogen bond between the phenolic H atom and the carbonyl O atom of the adjacent acetyl group. In the crystal, mol-ecules are linked by hydrogen bonds involving the 4-phenolic H atom and a symmetry-related carbonyl O atom of a neighboring mol-ecule, resulting in extended supra-molecular chains along the a-axis direction. Aromatic π-π stacking inter-actions between the nearly parallel benzene rings of adjacent chains [centroid-centroid distance = 3.7478 (8) Å] further stabilize the three-dimensional supra-molecular framework.Entities:
Keywords: 1-(2,4-dihydroxy-6-methylphenyl)ethanone; bioactive secondary metabolite; crystal structure; hydrogen bonding; π–π stacking
Year: 2015 PMID: 26396824 PMCID: PMC4571424 DOI: 10.1107/S2056989015013468
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C9H10O3 | |
| Monoclinic, | Mo |
| Cell parameters from 1754 reflections | |
| θ = 1.0–27.5° | |
| µ = 0.10 mm−1 | |
| β = 91.017 (4)° | |
| Block, yellow | |
| 0.25 × 0.25 × 0.25 mm |
| Nonius KappaCCD diffractometer | 1319 reflections with |
| Radiation source: fine-focus sealed tube | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| CCD scans | |
| 3260 measured reflections | |
| 1828 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1828 reflections | Δρmax = 0.22 e Å−3 |
| 114 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.06 (2) |
| Geometry. All e.s.d.'s(except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted |
| C1 | 0.70787 (19) | 0.22482 (9) | 0.77437 (17) | 0.0385 (4) | |
| C2 | 0.70538 (18) | 0.32006 (10) | 0.77086 (18) | 0.0407 (4) | |
| C3 | 0.8510 (2) | 0.37042 (10) | 0.83381 (19) | 0.0436 (4) | |
| H3 | 0.8441 | 0.4381 | 0.8326 | 0.052* | |
| C4 | 1.00510 (19) | 0.32826 (10) | 0.89794 (19) | 0.0447 (4) | |
| C5 | 1.0142 (2) | 0.23520 (10) | 0.9001 (2) | 0.0446 (4) | |
| H5 | 1.1320 | 0.2021 | 0.9410 | 0.053* | |
| C6 | 0.87053 (19) | 0.18331 (10) | 0.84171 (17) | 0.0416 (4) | |
| C7 | 0.5457 (2) | 0.17763 (10) | 0.70990 (19) | 0.0456 (4) | |
| C8 | 0.5184 (3) | 0.07921 (13) | 0.7285 (3) | 0.0776 (6) | |
| H8A | 0.6044 | 0.0483 | 0.6544 | 0.116* | |
| H8B | 0.3972 | 0.0640 | 0.6891 | 0.116* | |
| H8C | 0.5360 | 0.0622 | 0.8541 | 0.116* | |
| O9 | 0.41657 (15) | 0.21912 (7) | 0.63688 (18) | 0.0588 (4) | |
| O10 | 0.55972 (15) | 0.36627 (7) | 0.70969 (17) | 0.0552 (4) | |
| H10 | 0.4830 | 0.3316 | 0.6688 | 0.083* | |
| O11 | 1.14661 (16) | 0.37918 (8) | 0.95736 (18) | 0.0631 (4) | |
| H11 | 1.2256 | 0.3471 | 1.0026 | 0.095* | |
| C12 | 0.9014 (3) | 0.08414 (11) | 0.8510 (2) | 0.0607 (5) | |
| H12A | 0.8165 | 0.0580 | 0.9335 | 0.073* | |
| H12B | 1.0231 | 0.0725 | 0.8940 | 0.073* | |
| H12C | 0.8842 | 0.0588 | 0.7315 | 0.073* |
| C1 | 0.0408 (8) | 0.0373 (8) | 0.0373 (7) | 0.0021 (6) | −0.0033 (6) | 0.0009 (5) |
| C2 | 0.0384 (7) | 0.0409 (8) | 0.0426 (7) | 0.0061 (6) | −0.0036 (5) | 0.0034 (6) |
| C3 | 0.0438 (8) | 0.0373 (8) | 0.0496 (8) | 0.0011 (6) | −0.0048 (6) | 0.0029 (6) |
| C4 | 0.0404 (8) | 0.0485 (9) | 0.0449 (8) | −0.0015 (6) | −0.0053 (6) | 0.0013 (6) |
| C5 | 0.0402 (8) | 0.0481 (9) | 0.0452 (8) | 0.0092 (6) | −0.0059 (6) | 0.0017 (6) |
| C6 | 0.0464 (8) | 0.0393 (8) | 0.0390 (7) | 0.0068 (6) | −0.0027 (6) | 0.0024 (5) |
| C7 | 0.0462 (8) | 0.0469 (9) | 0.0436 (8) | −0.0020 (7) | −0.0047 (6) | 0.0001 (6) |
| C8 | 0.0771 (13) | 0.0495 (11) | 0.1050 (15) | −0.0156 (9) | −0.0344 (11) | 0.0089 (10) |
| O9 | 0.0443 (7) | 0.0558 (7) | 0.0756 (8) | −0.0015 (5) | −0.0172 (5) | 0.0004 (5) |
| O10 | 0.0447 (7) | 0.0420 (6) | 0.0782 (8) | 0.0077 (5) | −0.0177 (5) | 0.0043 (5) |
| O11 | 0.0475 (7) | 0.0556 (7) | 0.0853 (9) | −0.0071 (5) | −0.0213 (6) | 0.0027 (6) |
| C12 | 0.0671 (11) | 0.0429 (9) | 0.0717 (11) | 0.0126 (8) | −0.0123 (8) | 0.0029 (8) |
| C1—C6 | 1.4288 (18) | C6—C12 | 1.506 (2) |
| C1—C2 | 1.429 (2) | C7—O9 | 1.2481 (18) |
| C1—C7 | 1.4585 (19) | C7—C8 | 1.497 (2) |
| C2—O10 | 1.3462 (16) | C8—H8A | 0.9600 |
| C2—C3 | 1.3831 (19) | C8—H8B | 0.9600 |
| C3—C4 | 1.374 (2) | C8—H8C | 0.9600 |
| C3—H3 | 1.0170 | O10—H10 | 0.8200 |
| C4—O11 | 1.3566 (18) | O11—H11 | 0.8200 |
| C4—C5 | 1.398 (2) | C12—H12A | 0.9600 |
| C5—C6 | 1.375 (2) | C12—H12B | 0.9600 |
| C5—H5 | 1.0380 | C12—H12C | 0.9600 |
| C6—C1—C2 | 116.89 (13) | O9—C7—C1 | 120.57 (14) |
| C6—C1—C7 | 125.12 (13) | O9—C7—C8 | 115.38 (14) |
| C2—C1—C7 | 117.99 (12) | C1—C7—C8 | 124.04 (14) |
| O10—C2—C3 | 115.89 (13) | C7—C8—H8A | 109.5 |
| O10—C2—C1 | 122.05 (13) | C7—C8—H8B | 109.5 |
| C3—C2—C1 | 122.04 (12) | H8A—C8—H8B | 109.5 |
| C4—C3—C2 | 119.47 (14) | C7—C8—H8C | 109.5 |
| C4—C3—H3 | 120.3 | H8A—C8—H8C | 109.5 |
| C2—C3—H3 | 120.3 | H8B—C8—H8C | 109.5 |
| O11—C4—C3 | 118.31 (14) | C2—O10—H10 | 109.5 |
| O11—C4—C5 | 121.49 (13) | C4—O11—H11 | 109.5 |
| C3—C4—C5 | 120.19 (13) | C6—C12—H12A | 109.5 |
| C6—C5—C4 | 121.71 (13) | C6—C12—H12B | 109.5 |
| C6—C5—H5 | 116.9 | H12A—C12—H12B | 109.5 |
| C4—C5—H5 | 121.4 | C6—C12—H12C | 109.5 |
| C5—C6—C1 | 119.68 (13) | H12A—C12—H12C | 109.5 |
| C5—C6—C12 | 115.52 (13) | H12B—C12—H12C | 109.5 |
| C1—C6—C12 | 124.79 (14) | ||
| C6—C1—C2—O10 | 179.79 (12) | C4—C5—C6—C1 | 0.9 (2) |
| C7—C1—C2—O10 | −0.3 (2) | C4—C5—C6—C12 | 179.57 (14) |
| C6—C1—C2—C3 | −1.66 (19) | C2—C1—C6—C5 | 0.41 (19) |
| C7—C1—C2—C3 | 178.24 (13) | C7—C1—C6—C5 | −179.48 (13) |
| O10—C2—C3—C4 | −179.77 (13) | C2—C1—C6—C12 | −178.14 (14) |
| C1—C2—C3—C4 | 1.6 (2) | C7—C1—C6—C12 | 2.0 (2) |
| C2—C3—C4—O11 | 179.41 (13) | C6—C1—C7—O9 | −172.96 (13) |
| C2—C3—C4—C5 | −0.2 (2) | C2—C1—C7—O9 | 7.2 (2) |
| O11—C4—C5—C6 | 179.36 (14) | C6—C1—C7—C8 | 8.5 (2) |
| C3—C4—C5—C6 | −1.0 (2) | C2—C1—C7—C8 | −171.41 (16) |
| H··· | ||||
| O10—H10···O9 | 0.82 | 1.77 | 2.4991 (16) | 147 |
| O11—H11···O9i | 0.82 | 1.97 | 2.7843 (16) | 173 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O10H10O9 | 0.82 | 1.77 | 2.4991(16) | 147 |
| O11H11O9i | 0.82 | 1.97 | 2.7843(16) | 173 |
Symmetry code: (i) .