Literature DB >> 26396815

Crystal structure of diethyl 2-[(2-sulfan-yl-quinolin-3-yl)methyl-idene]malonate.

B R Anitha1, T G Meenakshi2, K Mahesh Kumar3, H C Devarajegowda1.   

Abstract

In the title compound, C17H17N O4S, the quinoline ring system is nearly planar, with a maximum deviation of 0.0496 (16) Å. A weak intra-molecular C-H⋯O inter-action is observed. In the crystal, C-H⋯O, S-H⋯N and π-π stacking inter-actions between the fused benzene ring of quinoline and the pyridine moieties [shortest centroid-centroid distance = 3.6754 (11) Å] are observed. Inversion-related weak C-H⋯O inter-molecular inter-actions diagonally along [010], with R 2 (2)(10) ring motifs, and S-H⋯N inter-molecular inter-actions diagonally along [100], with R 2 (2)(8) ring motifs, are present, forming a three-dimensional network structure. No classical hydrogen bonds are observed.

Entities:  

Keywords:  crystal structure; diester; inter­molecular inter­actions; malonate; quinoline

Year:  2015        PMID: 26396815      PMCID: PMC4571415          DOI: 10.1107/S2056989015013596

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological applications of quinolines, see: Nandeshwarappa et al.(2006 ▸); Noda et al. (2001 ▸); Pandey et al. (2004 ▸); Sharma et al. (2008 ▸).

Experimental

Crystal data

C17H17NO4S M = 331.37 Triclinic, a = 7.3739 (4) Å b = 7.8148 (4) Å c = 15.8149 (7) Å α = 90.158 (2)° β = 99.486 (2)° γ = 113.301 (2)° V = 823.24 (7) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.24 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▸) T min = 0.770, T max = 1.000 21213 measured reflections 5853 independent reflections 4295 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.213 S = 1.04 5853 reflections 234 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.98 e Å−3 Δρmin = −0.48 e Å−3

Data collection: SMART (Bruker, 2001 ▸); cell refinement: SAINT (Bruker, 2001 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL2014. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015013596/jj2194sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013596/jj2194Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013596/jj2194Isup3.cml Click here for additional data file. 17 17 4 . DOI: 10.1107/S2056989015013596/jj2194fig1.tif ORTEP diagram of the title compound, C17H17N O4S. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen atoms are shown as spheres of arbitrary radius. Click here for additional data file. 17 17 4 a . DOI: 10.1107/S2056989015013596/jj2194fig2.tif A view of the packing in the title mol­ecule, C17H17N O4S, along the a axis. Dashed lines indicate weak C—H⋯O and S—H⋯N inter­molecular inter­actions with inversio- related C—H⋯O inter­molecular inter­actions diagonally along [010] with (10) ring motifs and S—H⋯N inter­molecular inter­actions diagonally along [100] with (8) ring motifs forming a three-dimensional network structure. CCDC reference: 1413116 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H17NO4SF(000) = 348
Mr = 331.37Dx = 1.337 Mg m3
Triclinic, P1Melting point: 458 K
a = 7.3739 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.8148 (4) ÅCell parameters from 5853 reflections
c = 15.8149 (7) Åθ = 2.6–32.5°
α = 90.158 (2)°µ = 0.22 mm1
β = 99.486 (2)°T = 296 K
γ = 113.301 (2)°Plate, yellow
V = 823.24 (7) Å30.24 × 0.20 × 0.12 mm
Z = 2
Bruker SMART CCD area-detector diffractometer5853 independent reflections
Radiation source: fine-focus sealed tube4295 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 10.0 pixels mm-1θmax = 32.5°, θmin = 2.6°
ω and φ scansh = −11→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.770, Tmax = 1.000l = −23→23
21213 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.213w = 1/[σ2(Fo2) + (0.1265P)2 + 0.1563P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
5853 reflectionsΔρmax = 0.98 e Å3
234 parametersΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.89170 (8)0.93555 (6)0.36268 (3)0.05361 (17)
H10.91301.05420.41630.080*
O20.9018 (3)0.6179 (2)0.10198 (11)0.0741 (5)
O30.6426 (2)0.3469 (2)0.05791 (8)0.0546 (3)
O40.5360 (3)0.1266 (2)0.23539 (12)0.0772 (5)
O50.3614 (2)0.2881 (2)0.17989 (10)0.0584 (4)
N60.8126 (2)0.71751 (18)0.48999 (9)0.0417 (3)
C70.8326 (2)0.7292 (2)0.40651 (10)0.0380 (3)
C80.7963 (2)0.5561 (2)0.35911 (10)0.0370 (3)
C90.7551 (2)0.3953 (2)0.40069 (10)0.0398 (3)
C100.7342 (2)0.3901 (2)0.48846 (10)0.0383 (3)
C110.7609 (2)0.5567 (2)0.53269 (10)0.0388 (3)
C120.7363 (3)0.5596 (3)0.61848 (11)0.0491 (4)
C130.6855 (3)0.3962 (3)0.65909 (13)0.0552 (4)
C140.6621 (3)0.2299 (3)0.61664 (14)0.0555 (5)
C150.6872 (3)0.2268 (2)0.53337 (13)0.0480 (4)
C160.8203 (2)0.5658 (2)0.26908 (10)0.0409 (3)
C170.7083 (2)0.4422 (2)0.20334 (10)0.0408 (3)
C180.5287 (3)0.2679 (2)0.20902 (10)0.0452 (4)
C190.7642 (3)0.4825 (3)0.11661 (11)0.0480 (4)
C200.1759 (3)0.1201 (4)0.17362 (19)0.0786 (7)
H20A0.17670.02500.13430.094*
H20B0.16380.07060.22960.094*
C210.0112 (5)0.1699 (7)0.1429 (4)0.153 (2)
H21A0.03060.28430.17310.229*
H21B−0.11140.07240.15250.229*
H21C0.00380.18640.08250.229*
C220.6792 (4)0.3723 (4)−0.03002 (13)0.0671 (6)
H22A0.67440.4891−0.04820.081*
H22B0.81090.3761−0.03330.081*
C230.5247 (5)0.2163 (5)−0.08543 (16)0.0886 (9)
H23A0.53720.1023−0.06980.133*
H23B0.54030.2350−0.14420.133*
H23C0.39460.2086−0.07880.133*
H90.737 (4)0.276 (4)0.3721 (18)0.066 (7)*
H120.762 (4)0.689 (4)0.6437 (17)0.063 (7)*
H130.658 (4)0.395 (4)0.715 (2)0.079 (8)*
H140.628 (5)0.139 (5)0.643 (2)0.081 (9)*
H150.659 (4)0.107 (4)0.5002 (17)0.067 (7)*
H160.917 (3)0.662 (3)0.2553 (14)0.044 (5)*
U11U22U33U12U13U23
S10.0738 (3)0.0359 (2)0.0479 (3)0.0171 (2)0.0148 (2)0.00743 (17)
O20.0679 (9)0.0726 (10)0.0589 (8)−0.0024 (8)0.0283 (7)−0.0006 (7)
O30.0549 (7)0.0603 (8)0.0379 (6)0.0098 (6)0.0140 (5)−0.0042 (5)
O40.0872 (12)0.0437 (7)0.0777 (11)0.0108 (7)−0.0076 (9)0.0067 (7)
O50.0415 (6)0.0578 (8)0.0658 (8)0.0070 (5)0.0153 (6)0.0071 (6)
N60.0510 (7)0.0334 (6)0.0386 (6)0.0135 (5)0.0112 (5)0.0010 (5)
C70.0385 (7)0.0340 (6)0.0382 (7)0.0113 (5)0.0064 (5)0.0000 (5)
C80.0334 (6)0.0358 (6)0.0370 (6)0.0097 (5)0.0042 (5)−0.0023 (5)
C90.0377 (7)0.0339 (6)0.0426 (7)0.0109 (5)0.0021 (5)−0.0043 (5)
C100.0329 (6)0.0341 (6)0.0424 (7)0.0089 (5)0.0037 (5)0.0026 (5)
C110.0365 (7)0.0365 (7)0.0400 (7)0.0107 (5)0.0080 (5)0.0040 (5)
C120.0539 (9)0.0499 (9)0.0425 (8)0.0176 (7)0.0146 (7)0.0047 (7)
C130.0530 (10)0.0634 (11)0.0481 (9)0.0188 (8)0.0174 (8)0.0153 (8)
C140.0499 (9)0.0497 (10)0.0597 (11)0.0121 (7)0.0108 (8)0.0200 (8)
C150.0440 (8)0.0370 (7)0.0558 (9)0.0104 (6)0.0049 (7)0.0077 (7)
C160.0379 (7)0.0400 (7)0.0408 (7)0.0112 (6)0.0082 (6)−0.0002 (6)
C170.0396 (7)0.0429 (7)0.0370 (7)0.0128 (6)0.0090 (5)0.0005 (6)
C180.0496 (8)0.0419 (8)0.0340 (7)0.0084 (6)0.0062 (6)−0.0028 (6)
C190.0449 (8)0.0536 (9)0.0419 (8)0.0142 (7)0.0128 (6)0.0002 (7)
C200.0509 (11)0.0720 (15)0.0844 (16)−0.0077 (10)0.0189 (11)0.0015 (12)
C210.0525 (17)0.125 (3)0.240 (6)0.0057 (18)−0.007 (2)0.052 (4)
C220.0709 (13)0.0810 (15)0.0411 (9)0.0172 (11)0.0226 (9)0.0020 (9)
C230.115 (2)0.0886 (19)0.0448 (11)0.0240 (17)0.0127 (12)−0.0065 (11)
S1—C71.6796 (16)C13—H130.94 (3)
S1—H11.2000C14—C151.361 (3)
O2—C191.197 (2)C14—H140.80 (3)
O3—C191.326 (2)C15—H151.00 (3)
O3—C221.459 (2)C16—C171.333 (2)
O4—C181.199 (2)C16—H160.86 (2)
O5—C181.314 (2)C17—C181.494 (2)
O5—C201.462 (3)C17—C191.495 (2)
N6—C71.352 (2)C20—C211.429 (5)
N6—C111.375 (2)C20—H20A0.9700
C7—C81.451 (2)C20—H20B0.9700
C8—C91.369 (2)C21—H21A0.9600
C8—C161.462 (2)C21—H21B0.9600
C9—C101.421 (2)C21—H21C0.9600
C9—H90.99 (3)C22—C231.456 (4)
C10—C111.403 (2)C22—H22A0.9700
C10—C151.411 (2)C22—H22B0.9700
C11—C121.399 (2)C23—H23A0.9600
C12—C131.374 (3)C23—H23B0.9600
C12—H121.02 (3)C23—H23C0.9600
C13—C141.396 (3)
C7—S1—H1109.5C16—C17—C18125.18 (14)
C19—O3—C22116.21 (16)C16—C17—C19117.59 (15)
C18—O5—C20116.10 (19)C18—C17—C19117.22 (14)
C7—N6—C11125.49 (13)O4—C18—O5124.31 (18)
N6—C7—C8116.36 (14)O4—C18—C17124.41 (18)
N6—C7—S1119.98 (11)O5—C18—C17111.27 (15)
C8—C7—S1123.65 (12)O2—C19—O3124.24 (16)
C9—C8—C7119.72 (14)O2—C19—C17124.71 (17)
C9—C8—C16122.79 (14)O3—C19—C17111.04 (15)
C7—C8—C16117.33 (14)C21—C20—O5108.0 (3)
C8—C9—C10121.62 (14)C21—C20—H20A110.1
C8—C9—H9122.7 (16)O5—C20—H20A110.1
C10—C9—H9115.7 (16)C21—C20—H20B110.1
C11—C10—C15118.31 (15)O5—C20—H20B110.1
C11—C10—C9118.09 (14)H20A—C20—H20B108.4
C15—C10—C9123.61 (15)C20—C21—H21A109.5
N6—C11—C12120.63 (14)C20—C21—H21B109.5
N6—C11—C10118.56 (14)H21A—C21—H21B109.5
C12—C11—C10120.81 (15)C20—C21—H21C109.5
C13—C12—C11118.92 (17)H21A—C21—H21C109.5
C13—C12—H12127.7 (14)H21B—C21—H21C109.5
C11—C12—H12113.3 (14)C23—C22—O3108.17 (19)
C12—C13—C14121.07 (18)C23—C22—H22A110.1
C12—C13—H13119.0 (18)O3—C22—H22A110.1
C14—C13—H13119.8 (18)C23—C22—H22B110.1
C15—C14—C13120.20 (17)O3—C22—H22B110.1
C15—C14—H14124 (2)H22A—C22—H22B108.4
C13—C14—H14116 (2)C22—C23—H23A109.5
C14—C15—C10120.66 (17)C22—C23—H23B109.5
C14—C15—H15121.4 (15)H23A—C23—H23B109.5
C10—C15—H15117.6 (15)C22—C23—H23C109.5
C17—C16—C8127.50 (15)H23A—C23—H23C109.5
C17—C16—H16114.3 (14)H23B—C23—H23C109.5
C8—C16—H16118.2 (14)
C11—N6—C7—C8−0.1 (2)C11—C10—C15—C142.2 (2)
C11—N6—C7—S1178.63 (13)C9—C10—C15—C14−177.58 (16)
N6—C7—C8—C9−3.4 (2)C9—C8—C16—C1742.8 (3)
S1—C7—C8—C9177.93 (12)C7—C8—C16—C17−141.69 (17)
N6—C7—C8—C16−179.02 (14)C8—C16—C17—C181.8 (3)
S1—C7—C8—C162.3 (2)C8—C16—C17—C19−179.45 (16)
C7—C8—C9—C104.1 (2)C20—O5—C18—O4−5.2 (3)
C16—C8—C9—C10179.47 (14)C20—O5—C18—C17173.63 (17)
C8—C9—C10—C11−1.3 (2)C16—C17—C18—O4−78.9 (3)
C8—C9—C10—C15178.46 (15)C19—C17—C18—O4102.4 (2)
C7—N6—C11—C12−177.33 (16)C16—C17—C18—O5102.3 (2)
C7—N6—C11—C102.9 (2)C19—C17—C18—O5−76.47 (19)
C15—C10—C11—N6178.10 (14)C22—O3—C19—O2−2.2 (3)
C9—C10—C11—N6−2.1 (2)C22—O3—C19—C17178.64 (18)
C15—C10—C11—C12−1.7 (2)C16—C17—C19—O2−0.2 (3)
C9—C10—C11—C12178.05 (15)C18—C17—C19—O2178.7 (2)
N6—C11—C12—C13−179.72 (17)C16—C17—C19—O3178.96 (16)
C10—C11—C12—C130.1 (3)C18—C17—C19—O3−2.2 (2)
C11—C12—C13—C141.2 (3)C18—O5—C20—C21178.7 (3)
C12—C13—C14—C15−0.7 (3)C19—O3—C22—C23−176.6 (2)
C13—C14—C15—C10−1.0 (3)
D—H···AD—HH···AD···AD—H···A
S1—H1···N6i1.202.373.3389 (14)136
C9—H9···O40.99 (3)2.41 (3)3.122 (2)129 (2)
C22—H22B···O2ii0.972.523.438 (4)158
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
S1H1N6i 1.202.373.3389(14)136
C9H9O40.99(3)2.41(3)3.122(2)129(2)
C22H22BO2ii 0.972.523.438(4)158

Symmetry codes: (i) ; (ii) .

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