Literature DB >> 26396811

Crystal structure of pyriproxyfen.

Gihaeng Kang1, Jineun Kim1, Hyunjin Park1, Tae Ho Kim1.   

Abstract

In the title compound {systematic name: 4-phen-oxy-phenyl (RS)-2-[(pyridin-2-yl)-oxy]propyl ether}, C20H19NO3, which is a juvenile hormone mimic and insecticide, the dihedral angles between the plane of the central benene ring and those of the pendant pyridine ring and phenyl ring are 78.09 (6) and 82.14 (8)°, respectively. The conformation of the O-C-C-O linkage is gauche [torsion angle = -75.0 (2)°]. In the crystal, weak aromatic π-π stacking inter-actions [centroid-centroid separation = 3.8436 (13) Å] and C-H⋯π inter-actions link adjacent mol-ecules, forming a three-dimensional network.

Entities:  

Keywords:  crystal structure; ether; insecticide; juvenile hormone mimic; pyriproxyfen; π–π stacking

Year:  2015        PMID: 26396811      PMCID: PMC4571411          DOI: 10.1107/S2056989015013481

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For information on the insecticidal properties of the title compound, see: Shah et al. (2015 ▸). For related crystal structures, see: Ji et al. (2013 ▸); Kang et al. (2014 ▸).

Experimental

Crystal data

C20H19NO3 M = 321.36 Orthorhombic, a = 10.0676 (2) Å b = 8.0279 (1) Å c = 40.9129 (7) Å V = 3306.65 (10) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.25 × 0.13 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.979, T max = 0.997 52074 measured reflections 3238 independent reflections 2515 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.148 S = 1.04 3238 reflections 218 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015013481/hb7462sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013481/hb7462Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013481/hb7462Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015013481/hb7462fig1.tif The asymmetric unit of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. a . DOI: 10.1107/S2056989015013481/hb7462fig2.tif Crystal packing viewed along the a axis. The weak C—H⋯π and π–π inter­actions are shown as dashed lines. CCDC reference: 1412612 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H19NO3Dx = 1.291 Mg m3
Mr = 321.36Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 7580 reflections
a = 10.0676 (2) Åθ = 2.3–22.0°
b = 8.0279 (1) ŵ = 0.09 mm1
c = 40.9129 (7) ÅT = 173 K
V = 3306.65 (10) Å3Block, colourless
Z = 80.25 × 0.13 × 0.03 mm
F(000) = 1360
Bruker APEXII CCD diffractometer2515 reflections with I > 2σ(I)
φ and ω scansRint = 0.065
Absorption correction: multi-scan (SADABS; Bruker, 2009)θmax = 26.0°, θmin = 2.0°
Tmin = 0.979, Tmax = 0.997h = −12→12
52074 measured reflectionsk = −9→9
3238 independent reflectionsl = −50→50
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.148w = 1/[σ2(Fo2) + (0.0576P)2 + 2.9207P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3238 reflectionsΔρmax = 0.66 e Å3
218 parametersΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.93462 (16)−0.1993 (2)0.07340 (4)0.0440 (4)
O20.97257 (17)0.12811 (19)0.10028 (4)0.0407 (4)
O30.84983 (16)0.6264 (2)0.18833 (4)0.0470 (4)
N10.9994 (2)−0.2077 (3)0.01922 (5)0.0430 (5)
C10.8083 (2)−0.3616 (3)0.03714 (6)0.0427 (6)
H10.7514−0.39310.05460.051*
C20.7879 (2)−0.4169 (3)0.00560 (6)0.0454 (6)
H20.7164−0.49010.00080.054*
C30.8727 (2)−0.3645 (3)−0.01884 (6)0.0446 (6)
H30.8595−0.3993−0.04080.054*
C40.9750 (2)−0.2626 (3)−0.01099 (6)0.0443 (6)
H41.0329−0.2280−0.02800.053*
C50.9177 (2)−0.2561 (3)0.04197 (5)0.0357 (5)
C61.0603 (2)−0.1277 (3)0.08188 (5)0.0385 (5)
H61.0927−0.05790.06330.046*
C71.1605 (3)−0.2635 (3)0.08878 (6)0.0516 (7)
H7A1.1273−0.33530.10630.077*
H7B1.2449−0.21310.09550.077*
H7C1.1743−0.33000.06900.077*
C81.0369 (3)−0.0192 (3)0.11085 (6)0.0413 (6)
H8A0.9807−0.07810.12700.050*
H8B1.12250.00880.12140.050*
C90.9480 (2)0.2473 (3)0.12354 (5)0.0328 (5)
C100.8926 (3)0.3944 (3)0.11212 (6)0.0418 (6)
H100.87550.40790.08940.050*
C110.8624 (2)0.5218 (3)0.13372 (6)0.0419 (6)
H110.82440.62270.12600.050*
C120.8880 (2)0.5010 (3)0.16646 (6)0.0381 (5)
C130.9423 (2)0.3563 (3)0.17803 (6)0.0405 (6)
H130.95880.34370.20080.049*
C140.9732 (2)0.2277 (3)0.15657 (5)0.0389 (5)
H141.01140.12730.16450.047*
C150.9434 (2)0.7403 (3)0.19842 (5)0.0335 (5)
C161.0758 (2)0.7374 (3)0.18908 (5)0.0376 (5)
H161.10780.65480.17440.045*
C171.1612 (3)0.8584 (3)0.20167 (6)0.0441 (6)
H171.25210.85810.19550.053*
C181.1157 (3)0.9779 (3)0.22293 (6)0.0465 (6)
H181.17511.05850.23160.056*
C190.9830 (3)0.9803 (3)0.23162 (5)0.0434 (6)
H190.95101.06400.24600.052*
C200.8970 (2)0.8620 (3)0.21951 (5)0.0387 (5)
H200.80600.86390.22560.046*
U11U22U33U12U13U23
O10.0434 (10)0.0497 (10)0.0389 (9)−0.0070 (8)0.0040 (7)−0.0049 (7)
O20.0592 (10)0.0341 (8)0.0290 (8)0.0042 (8)−0.0059 (7)0.0004 (6)
O30.0366 (9)0.0428 (10)0.0618 (11)−0.0025 (8)0.0069 (8)−0.0159 (8)
N10.0424 (11)0.0441 (12)0.0424 (11)0.0004 (9)0.0015 (9)−0.0029 (9)
C10.0396 (13)0.0426 (14)0.0459 (14)0.0053 (11)0.0021 (11)0.0098 (11)
C20.0387 (13)0.0353 (13)0.0622 (16)−0.0019 (11)−0.0161 (12)0.0006 (12)
C30.0472 (14)0.0498 (14)0.0368 (13)0.0126 (12)−0.0118 (11)−0.0084 (11)
C40.0430 (14)0.0494 (15)0.0404 (13)0.0033 (12)0.0011 (11)0.0014 (11)
C50.0401 (12)0.0340 (12)0.0330 (11)0.0096 (10)−0.0075 (10)−0.0037 (9)
C60.0378 (13)0.0424 (13)0.0353 (12)−0.0025 (11)−0.0014 (10)−0.0053 (10)
C70.0529 (16)0.0536 (16)0.0484 (14)0.0071 (13)−0.0012 (12)−0.0074 (12)
C80.0508 (14)0.0360 (13)0.0372 (12)0.0029 (11)−0.0045 (10)−0.0006 (10)
C90.0363 (12)0.0306 (11)0.0314 (11)−0.0030 (9)−0.0030 (9)−0.0007 (9)
C100.0506 (14)0.0385 (13)0.0362 (12)−0.0009 (11)−0.0043 (11)0.0079 (10)
C110.0430 (14)0.0335 (12)0.0493 (14)0.0031 (11)−0.0012 (11)0.0057 (11)
C120.0315 (11)0.0365 (12)0.0461 (13)−0.0038 (10)0.0016 (10)−0.0065 (10)
C130.0429 (13)0.0452 (14)0.0334 (12)0.0002 (11)−0.0040 (10)−0.0040 (10)
C140.0470 (14)0.0355 (12)0.0343 (12)0.0029 (11)−0.0064 (10)0.0017 (10)
C150.0376 (12)0.0306 (11)0.0322 (11)−0.0006 (10)−0.0030 (9)0.0020 (9)
C160.0398 (13)0.0362 (12)0.0368 (12)0.0040 (10)0.0008 (10)0.0029 (10)
C170.0384 (13)0.0463 (14)0.0477 (14)−0.0033 (11)−0.0069 (11)0.0093 (12)
C180.0561 (16)0.0392 (13)0.0440 (13)−0.0040 (12)−0.0170 (12)0.0032 (11)
C190.0605 (16)0.0382 (13)0.0314 (12)0.0032 (12)−0.0073 (11)−0.0018 (10)
C200.0436 (13)0.0390 (12)0.0335 (12)0.0068 (11)−0.0007 (10)0.0010 (10)
O1—C51.375 (3)C8—H8B0.9900
O1—C61.432 (3)C9—C141.384 (3)
O2—C91.372 (3)C9—C101.387 (3)
O2—C81.416 (3)C10—C111.386 (3)
O3—C151.376 (3)C10—H100.9500
O3—C121.401 (3)C11—C121.374 (3)
N1—C51.302 (3)C11—H110.9500
N1—C41.335 (3)C12—C131.368 (3)
C1—C21.380 (3)C13—C141.391 (3)
C1—C51.404 (3)C13—H130.9500
C1—H10.9500C14—H140.9500
C2—C31.380 (4)C15—C201.385 (3)
C2—H20.9500C15—C161.387 (3)
C3—C41.354 (4)C16—C171.395 (3)
C3—H30.9500C16—H160.9500
C4—H40.9500C17—C181.373 (4)
C6—C81.490 (3)C17—H170.9500
C6—C71.511 (3)C18—C191.382 (4)
C6—H61.0000C18—H180.9500
C7—H7A0.9800C19—C201.377 (3)
C7—H7B0.9800C19—H190.9500
C7—H7C0.9800C20—H200.9500
C8—H8A0.9900
C5—O1—C6117.96 (18)O2—C9—C14124.4 (2)
C9—O2—C8116.94 (16)O2—C9—C10115.65 (19)
C15—O3—C12118.77 (17)C14—C9—C10120.0 (2)
C5—N1—C4116.5 (2)C11—C10—C9120.1 (2)
C2—C1—C5116.3 (2)C11—C10—H10119.9
C2—C1—H1121.9C9—C10—H10119.9
C5—C1—H1121.9C12—C11—C10119.4 (2)
C1—C2—C3119.1 (2)C12—C11—H11120.3
C1—C2—H2120.4C10—C11—H11120.3
C3—C2—H2120.4C13—C12—C11121.0 (2)
C4—C3—C2118.9 (2)C13—C12—O3119.9 (2)
C4—C3—H3120.6C11—C12—O3118.9 (2)
C2—C3—H3120.6C12—C13—C14120.1 (2)
N1—C4—C3124.0 (2)C12—C13—H13119.9
N1—C4—H4118.0C14—C13—H13119.9
C3—C4—H4118.0C9—C14—C13119.4 (2)
N1—C5—O1119.5 (2)C9—C14—H14120.3
N1—C5—C1125.1 (2)C13—C14—H14120.3
O1—C5—C1115.4 (2)O3—C15—C20115.1 (2)
O1—C6—C8106.72 (19)O3—C15—C16124.4 (2)
O1—C6—C7110.2 (2)C20—C15—C16120.5 (2)
C8—C6—C7112.2 (2)C15—C16—C17118.6 (2)
O1—C6—H6109.2C15—C16—H16120.7
C8—C6—H6109.2C17—C16—H16120.7
C7—C6—H6109.2C18—C17—C16121.0 (2)
C6—C7—H7A109.5C18—C17—H17119.5
C6—C7—H7B109.5C16—C17—H17119.5
H7A—C7—H7B109.5C17—C18—C19119.6 (2)
C6—C7—H7C109.5C17—C18—H18120.2
H7A—C7—H7C109.5C19—C18—H18120.2
H7B—C7—H7C109.5C20—C19—C18120.4 (2)
O2—C8—C6108.52 (18)C20—C19—H19119.8
O2—C8—H8A110.0C18—C19—H19119.8
C6—C8—H8A110.0C19—C20—C15119.9 (2)
O2—C8—H8B110.0C19—C20—H20120.1
C6—C8—H8B110.0C15—C20—H20120.1
H8A—C8—H8B108.4
C5—C1—C2—C3−1.1 (3)C10—C11—C12—C13−0.3 (4)
C1—C2—C3—C41.2 (4)C10—C11—C12—O3−176.2 (2)
C5—N1—C4—C3−0.5 (4)C15—O3—C12—C1386.0 (3)
C2—C3—C4—N1−0.4 (4)C15—O3—C12—C11−98.0 (3)
C4—N1—C5—O1−177.7 (2)C11—C12—C13—C140.4 (4)
C4—N1—C5—C10.7 (3)O3—C12—C13—C14176.3 (2)
C6—O1—C5—N1−17.0 (3)O2—C9—C14—C13−179.0 (2)
C6—O1—C5—C1164.4 (2)C10—C9—C14—C130.2 (3)
C2—C1—C5—N10.1 (3)C12—C13—C14—C9−0.4 (4)
C2—C1—C5—O1178.6 (2)C12—O3—C15—C20178.8 (2)
C5—O1—C6—C8157.85 (19)C12—O3—C15—C16−1.8 (3)
C5—O1—C6—C7−80.0 (2)O3—C15—C16—C17−178.6 (2)
C9—O2—C8—C6−177.21 (19)C20—C15—C16—C170.7 (3)
O1—C6—C8—O2−75.0 (2)C15—C16—C17—C180.1 (3)
C7—C6—C8—O2164.1 (2)C16—C17—C18—C19−1.0 (4)
C8—O2—C9—C14−4.7 (3)C17—C18—C19—C201.1 (3)
C8—O2—C9—C10176.0 (2)C18—C19—C20—C15−0.2 (3)
O2—C9—C10—C11179.2 (2)O3—C15—C20—C19178.7 (2)
C14—C9—C10—C11−0.1 (4)C16—C15—C20—C19−0.7 (3)
C9—C10—C11—C120.1 (4)
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg1i0.952.853.667 (3)145
C14—H14···Cg2ii0.952.863.733 (2)152
C19—H19···Cg2iii0.952.973.857 (2)156
Table 1

CH interactions (, )

Cg1 and Cg2 are the centroids of the N1/C4/C3/C2/C1/C5 and C15C20 rings, respectively.

DHA DHHA D A DHA
C2H2Cg1i 0.952.853.667(3)145
C14H14Cg2ii 0.952.863.733(2)152
C19H19Cg2iii 0.952.973.857(2)156

Symmetry codes: (i) ; (ii) ; (iii) .

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