Literature DB >> 26396806

Crystal structure of C-2-benzo-thia-zole-N-methyl-nitrone.

Roman Doroschuk1.   

Abstract

The mol-ecule of the title compound {systematic name: N-[(benzo-thia-zol-2-yl)methyl-idene]methyl-amine N-oxide}, C9H8N2OS, is close to planar [maximum deviation from the mean plane = 0.081 (2) Å], its conformation being stabilized by a strong intra-molecular attractive S⋯O inter-action [2.6977 (16) Å]. In the crystal, mol-ecules are linked into centrosymmetric dimers by pairs of weak C-H⋯O hydrogen bonds.

Entities:  

Keywords:  S⋯O attractive inter­action; benzo­thia­zole; crystal structure; nitrone

Year:  2015        PMID: 26396806      PMCID: PMC4571406          DOI: 10.1107/S2056989015013262

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the 1,3-dipolar cyclo­addition reaction of nitro­nes, see: Tufariello (1984 ▸); Torssell (1988 ▸). For the properties of benzo­thia­zole derivatives, see: Bradshaw et al. (2002 ▸); Paramashivappa et al. (2003 ▸); Jimonet et al. (1999 ▸); Ul-Hasan et al. (2002 ▸); Şener et al. (2000 ▸); Mruthyunjayaswamy & Shanthaveerappa (2000 ▸); Arpaci et al. (2002 ▸). For work by our group on nitro­nes, see: Doroschuk et al. (2006 ▸); Raspertova et al. (2002 ▸); Petkova et al. (2001 ▸). For attractive S—O inter­actions, see: Mokhir et al. (1999 ▸). For N—O bond lengths in nitro­nes, see: Ruano et al. (2012 ▸). For van der Waals radii, see: Wells (1986 ▸). For the synthesis, see: Delpierre & Lamchen (1965 ▸).

Experimental

Crystal data

C9H8N2OS M = 192.23 Triclinic, a = 5.5253 (14) Å b = 7.4528 (19) Å c = 10.839 (4) Å α = 83.51 (2)° β = 85.79 (3)° γ = 77.39 (3)° V = 432.2 (2) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 294 K 0.4 × 0.3 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur 3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.423, T max = 0.994 3491 measured reflections 1933 independent reflections 1477 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.087 S = 1.00 1933 reflections 130 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.19 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015013262/rz5162sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013262/rz5162Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013262/rz5162Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015013262/rz5162fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015013262/rz5162fig2.tif Partial crystal packing of the title compound approximately viewed along [0 1 0], showing the formation of a dimeric unit through a pair of C—H⋯O hydrogen bonds (dashed lines). CCDC reference: 1411951 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H8N2OSZ = 2
Mr = 192.23F(000) = 200
Triclinic, P1Dx = 1.477 Mg m3
a = 5.5253 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.4528 (19) ÅCell parameters from 110 reflections
c = 10.839 (4) Åθ = 18.2–8.2°
α = 83.51 (2)°µ = 0.33 mm1
β = 85.79 (3)°T = 294 K
γ = 77.39 (3)°Block, colourless
V = 432.2 (2) Å30.4 × 0.3 × 0.2 mm
Oxford Diffraction Xcalibur 3 diffractometer1477 reflections with I > 2σ(I)
Detector resolution: 16.1827 pixels mm-1Rint = 0.018
ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −7→7
Tmin = 0.423, Tmax = 0.994k = −9→9
3491 measured reflectionsl = −14→14
1933 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0521P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1933 reflectionsΔρmax = 0.24 e Å3
130 parametersΔρmin = −0.19 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.0619 (2)0.21490 (18)0.72954 (11)0.0573 (3)
S10.22145 (7)0.17869 (5)0.49058 (4)0.04032 (14)
N1−0.1621 (2)0.29247 (17)0.70659 (12)0.0406 (3)
N2−0.1774 (2)0.33921 (18)0.37522 (12)0.0415 (3)
C1−0.3325 (3)0.3346 (3)0.81411 (16)0.0536 (4)
H1A−0.29360.43510.85130.091 (8)*
H1B−0.31590.22770.87380.078 (7)*
H1C−0.50000.36880.78780.100 (8)*
C2−0.2414 (3)0.3343 (2)0.59501 (14)0.0402 (3)
H2−0.40660.39380.58610.048 (5)*
C3−0.0891 (3)0.2941 (2)0.48533 (14)0.0366 (3)
C40.2333 (3)0.1897 (2)0.33030 (14)0.0368 (3)
C50.4328 (3)0.1236 (2)0.25071 (15)0.0423 (4)
H50.58580.06440.28130.049 (5)*
C60.3978 (3)0.1484 (2)0.12546 (16)0.0470 (4)
H60.531 (3)0.098 (2)0.0729 (18)0.058 (5)*
C70.1702 (3)0.2371 (2)0.07882 (15)0.0503 (4)
H70.15160.2513−0.00650.055 (5)*
C8−0.0273 (3)0.3040 (2)0.15698 (15)0.0483 (4)
H8−0.17900.36400.12530.065 (6)*
C90.0036 (3)0.2802 (2)0.28572 (14)0.0385 (3)
U11U22U33U12U13U23
O10.0454 (7)0.0711 (8)0.0454 (7)0.0102 (6)−0.0084 (5)−0.0037 (6)
S10.0344 (2)0.0451 (2)0.0377 (2)0.00088 (15)−0.00453 (15)−0.00450 (15)
N10.0385 (7)0.0394 (7)0.0402 (7)−0.0011 (5)−0.0012 (5)−0.0029 (5)
N20.0322 (7)0.0500 (7)0.0399 (7)−0.0034 (6)−0.0031 (5)−0.0038 (6)
C10.0562 (11)0.0594 (11)0.0411 (9)−0.0060 (8)0.0077 (8)−0.0069 (8)
C20.0344 (8)0.0425 (8)0.0415 (8)−0.0033 (6)−0.0033 (6)−0.0032 (7)
C30.0331 (7)0.0355 (8)0.0404 (8)−0.0051 (6)−0.0043 (6)−0.0030 (6)
C40.0367 (8)0.0362 (7)0.0375 (8)−0.0072 (6)−0.0035 (6)−0.0035 (6)
C50.0374 (8)0.0431 (8)0.0443 (8)−0.0024 (6)−0.0012 (7)−0.0082 (7)
C60.0472 (9)0.0492 (9)0.0443 (9)−0.0083 (7)0.0086 (7)−0.0133 (7)
C70.0555 (10)0.0605 (10)0.0359 (8)−0.0128 (8)−0.0020 (7)−0.0081 (8)
C80.0420 (9)0.0608 (10)0.0402 (9)−0.0055 (7)−0.0086 (7)−0.0030 (8)
C90.0369 (8)0.0410 (8)0.0376 (8)−0.0076 (6)−0.0024 (6)−0.0049 (6)
O1—N11.2763 (17)C2—C31.426 (2)
S1—C31.7456 (16)C4—C51.386 (2)
S1—C41.7269 (17)C4—C91.393 (2)
N1—C11.461 (2)C5—H50.9300
N1—C21.298 (2)C5—C61.371 (2)
N2—C31.303 (2)C6—H60.934 (19)
N2—C91.377 (2)C6—C71.389 (3)
C1—H1A0.9600C7—H70.9300
C1—H1B0.9600C7—C81.371 (2)
C1—H1C0.9600C8—H80.9300
C2—H20.9300C8—C91.405 (2)
C4—S1—C388.33 (8)C5—C4—C9121.64 (14)
O1—N1—C1116.50 (13)C9—C4—S1109.96 (12)
O1—N1—C2123.49 (13)C4—C5—H5121.0
C2—N1—C1120.01 (13)C6—C5—C4117.98 (15)
C3—N2—C9109.93 (12)C6—C5—H5121.0
N1—C1—H1A109.5C5—C6—H6117.3 (12)
N1—C1—H1B109.5C5—C6—C7121.45 (15)
N1—C1—H1C109.5C7—C6—H6121.2 (12)
H1A—C1—H1B109.5C6—C7—H7119.6
H1A—C1—H1C109.5C8—C7—C6120.85 (15)
H1B—C1—H1C109.5C8—C7—H7119.6
N1—C2—H2118.2C7—C8—H8120.6
N1—C2—C3123.58 (14)C7—C8—C9118.84 (16)
C3—C2—H2118.2C9—C8—H8120.6
N2—C3—S1116.37 (11)N2—C9—C4115.40 (14)
N2—C3—C2121.29 (13)N2—C9—C8125.36 (14)
C2—C3—S1122.33 (11)C4—C9—C8119.24 (15)
C5—C4—S1128.40 (12)
O1—N1—C2—C31.7 (2)C4—S1—C3—C2178.11 (13)
S1—C4—C5—C6179.91 (13)C4—C5—C6—C70.1 (3)
S1—C4—C9—N2−0.08 (17)C5—C4—C9—N2−179.70 (14)
S1—C4—C9—C8−179.91 (12)C5—C4—C9—C80.5 (2)
N1—C2—C3—S11.4 (2)C5—C6—C7—C80.4 (3)
N1—C2—C3—N2−179.90 (14)C6—C7—C8—C9−0.4 (3)
C1—N1—C2—C3−178.46 (14)C7—C8—C9—N2−179.78 (15)
C3—S1—C4—C5179.96 (15)C7—C8—C9—C40.0 (2)
C3—S1—C4—C90.38 (11)C9—N2—C3—S10.71 (17)
C3—N2—C9—C4−0.39 (19)C9—N2—C3—C2−178.07 (13)
C3—N2—C9—C8179.43 (15)C9—C4—C5—C6−0.5 (2)
C4—S1—C3—N2−0.65 (12)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.932.533.331 (2)145
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C5H5O1i 0.932.533.331(2)145

Symmetry code: (i) .

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