Literature DB >> 26396796

Crystal structure of 2-[2-(benz-yloxy)benzyl-idene]malono-nitrile.

Sammer Yousuf1, Huma Bano1, Munira Taj Muhammad1, Khalid Mohammed Khan1.   

Abstract

In the title benzyl-idenemalono-nitrile derivative, C17H12N2O, the dihedral angles between the central benzene ring and the Y-shaped C=C(CN)2 group (r.m.s. deviation = 0.006 Å) and the terminal benzene ring are 12.72 (8) and 37.60 (11)°, respectively. The Car-O-Csp (3)-Car torsion angle is -174.52 (13)° and the major twist between the aromatic rings occurs about the Csp (3)-Car bond. Weak aromatic π-π stacking [centroid-centroid separation = 3.7784 (13) Å; slippage = 1.21 Å] between inversion-related pairs of the central benzene rings is observed in the crystal.

Entities:  

Keywords:  benzyl­idenemalono­nitrile derivatives; crystal structure; malono­nitrile

Year:  2015        PMID: 26396796      PMCID: PMC4571396          DOI: 10.1107/S2056989015012608

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the applications and biological activities of benzyl­idenemalono­nitrile derivatives, see: Turpaev et al. (2011 ▸); Sagara et al. (2002 ▸); Novogrodsky et al. (1994 ▸); Gazit et al. (1989 ▸). For the crystal structure of a related compound, see: Gan et al. (2012 ▸).

Experimental

Crystal data

C17H12N2O M = 260.29 Triclinic, a = 7.2959 (9) Å b = 9.4963 (12) Å c = 11.0280 (14) Å α = 97.709 (3)° β = 107.953 (3)° γ = 105.155 (3)° V = 682.13 (15) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.34 × 0.11 × 0.07 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▸) T min = 0.973, T max = 0.994 7776 measured reflections 2545 independent reflections 1722 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.112 S = 1.01 2545 reflections 181 parameters H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.17 e Å−3

Data collection: SMART (Bruker, 2000 ▸); cell refinement: SAINT (Bruker, 2000 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015012608/hb7442sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015012608/hb7442Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012608/hb7442Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015012608/hb7442fig1.tif The mol­ecular structure of (I) with displacement ellipsoids drawn at 30% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015012608/hb7442fig2.tif The crystal packing of the title compound (I). CCDC reference: 1409734 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H12N2OZ = 2
Mr = 260.29F(000) = 272
Triclinic, P1Dx = 1.267 Mg m3
a = 7.2959 (9) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.4963 (12) ÅCell parameters from 1299 reflections
c = 11.0280 (14) Åθ = 2.3–20.8°
α = 97.709 (3)°µ = 0.08 mm1
β = 107.953 (3)°T = 293 K
γ = 105.155 (3)°Plate, colourless
V = 682.13 (15) Å30.34 × 0.11 × 0.07 mm
Bruker SMART APEX CCD diffractometer2545 independent reflections
Radiation source: fine-focus sealed tube1722 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω scanθmax = 25.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −8→8
Tmin = 0.973, Tmax = 0.994k = −11→11
7776 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0495P)2 + 0.016P] where P = (Fo2 + 2Fc2)/3
2545 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.37248 (18)0.70351 (12)0.15139 (10)0.0558 (3)
N1−0.0533 (3)0.06530 (19)0.15041 (17)0.0861 (6)
N20.2682 (3)0.38995 (18)0.52272 (16)0.0799 (6)
C10.6578 (3)0.9358 (2)0.36642 (19)0.0682 (6)
H1A0.67040.84090.36660.082*
C20.7541 (3)1.0476 (3)0.4799 (2)0.0840 (7)
H2A0.83001.02760.55650.101*
C30.7382 (4)1.1883 (3)0.4800 (2)0.0864 (7)
H3A0.80361.26390.55650.104*
C40.6260 (3)1.2171 (2)0.3675 (2)0.0816 (7)
H4A0.61631.31270.36700.098*
C50.5273 (3)1.1043 (2)0.2549 (2)0.0653 (5)
H5A0.44871.12410.17920.078*
C60.5432 (3)0.96316 (18)0.25284 (17)0.0501 (4)
C70.4489 (3)0.84695 (18)0.12655 (17)0.0573 (5)
H7A0.33880.87080.06660.069*
H7B0.54950.84530.08630.069*
C80.2956 (2)0.57991 (18)0.05089 (15)0.0459 (4)
C90.2793 (3)0.5848 (2)−0.07670 (16)0.0545 (5)
H9A0.32180.6764−0.09780.065*
C100.2002 (3)0.4537 (2)−0.17214 (17)0.0607 (5)
H10A0.19020.4575−0.25770.073*
C110.1356 (3)0.3172 (2)−0.14330 (17)0.0609 (5)
H11A0.08240.2293−0.20880.073*
C120.1501 (3)0.31157 (19)−0.01748 (16)0.0539 (5)
H12A0.10610.21890.00160.065*
C130.2296 (2)0.44161 (17)0.08304 (15)0.0440 (4)
C140.2524 (2)0.44280 (18)0.21768 (15)0.0478 (4)
H14A0.33150.53430.27650.057*
C150.1784 (2)0.33340 (18)0.27265 (15)0.0473 (4)
C160.0496 (3)0.1845 (2)0.20382 (17)0.0568 (5)
C170.2273 (3)0.36414 (19)0.41193 (19)0.0569 (5)
U11U22U33U12U13U23
O10.0745 (8)0.0390 (7)0.0461 (7)0.0046 (6)0.0232 (6)0.0091 (5)
N10.1044 (15)0.0552 (11)0.0784 (12)−0.0080 (10)0.0388 (11)0.0033 (9)
N20.1137 (15)0.0664 (11)0.0508 (11)0.0125 (10)0.0309 (10)0.0144 (9)
C10.0809 (14)0.0509 (12)0.0639 (13)0.0202 (10)0.0152 (11)0.0126 (10)
C20.0897 (17)0.0751 (16)0.0632 (14)0.0207 (13)0.0055 (12)0.0023 (12)
C30.0827 (16)0.0622 (15)0.0862 (17)0.0083 (12)0.0189 (13)−0.0159 (12)
C40.0847 (16)0.0464 (12)0.1071 (19)0.0192 (11)0.0332 (14)0.0030 (13)
C50.0673 (13)0.0491 (12)0.0790 (14)0.0183 (10)0.0248 (11)0.0177 (10)
C60.0521 (10)0.0404 (10)0.0562 (11)0.0086 (8)0.0221 (9)0.0121 (8)
C70.0675 (12)0.0448 (10)0.0564 (11)0.0114 (9)0.0205 (9)0.0190 (9)
C80.0448 (10)0.0475 (10)0.0404 (9)0.0099 (8)0.0146 (8)0.0060 (8)
C90.0587 (11)0.0578 (11)0.0459 (10)0.0130 (9)0.0207 (9)0.0156 (9)
C100.0634 (12)0.0778 (14)0.0382 (10)0.0178 (10)0.0198 (9)0.0113 (10)
C110.0663 (12)0.0603 (12)0.0443 (11)0.0099 (10)0.0189 (9)−0.0025 (9)
C120.0577 (11)0.0464 (10)0.0484 (11)0.0070 (9)0.0179 (9)0.0039 (8)
C130.0444 (9)0.0430 (9)0.0389 (9)0.0090 (7)0.0128 (7)0.0066 (7)
C140.0526 (10)0.0394 (9)0.0424 (10)0.0084 (8)0.0124 (8)0.0044 (7)
C150.0540 (10)0.0416 (10)0.0410 (9)0.0092 (8)0.0163 (8)0.0068 (8)
C160.0674 (12)0.0461 (11)0.0522 (11)0.0064 (10)0.0250 (9)0.0108 (9)
C170.0716 (13)0.0442 (11)0.0508 (12)0.0083 (9)0.0242 (10)0.0123 (9)
O1—C81.3580 (18)C7—H7B0.9700
O1—C71.4277 (18)C8—C91.383 (2)
N1—C161.138 (2)C8—C131.408 (2)
N2—C171.140 (2)C9—C101.374 (2)
C1—C61.375 (2)C9—H9A0.9300
C1—C21.378 (3)C10—C111.374 (2)
C1—H1A0.9300C10—H10A0.9300
C2—C31.371 (3)C11—C121.368 (2)
C2—H2A0.9300C11—H11A0.9300
C3—C41.366 (3)C12—C131.397 (2)
C3—H3A0.9300C12—H12A0.9300
C4—C51.377 (3)C13—C141.440 (2)
C4—H4A0.9300C14—C151.348 (2)
C5—C61.373 (2)C14—H14A0.9300
C5—H5A0.9300C15—C161.427 (2)
C6—C71.494 (2)C15—C171.435 (2)
C7—H7A0.9700
C8—O1—C7118.82 (13)O1—C8—C13115.91 (14)
C6—C1—C2120.69 (18)C9—C8—C13120.32 (15)
C6—C1—H1A119.7C10—C9—C8119.76 (17)
C2—C1—H1A119.7C10—C9—H9A120.1
C3—C2—C1120.0 (2)C8—C9—H9A120.1
C3—C2—H2A120.0C9—C10—C11121.12 (16)
C1—C2—H2A120.0C9—C10—H10A119.4
C4—C3—C2119.8 (2)C11—C10—H10A119.4
C4—C3—H3A120.1C12—C11—C10119.45 (16)
C2—C3—H3A120.1C12—C11—H11A120.3
C3—C4—C5119.9 (2)C10—C11—H11A120.3
C3—C4—H4A120.0C11—C12—C13121.61 (16)
C5—C4—H4A120.0C11—C12—H12A119.2
C6—C5—C4121.0 (2)C13—C12—H12A119.2
C6—C5—H5A119.5C12—C13—C8117.74 (15)
C4—C5—H5A119.5C12—C13—C14124.20 (15)
C5—C6—C1118.55 (17)C8—C13—C14118.05 (14)
C5—C6—C7119.67 (17)C15—C14—C13130.76 (15)
C1—C6—C7121.64 (16)C15—C14—H14A114.6
O1—C7—C6109.28 (14)C13—C14—H14A114.6
O1—C7—H7A109.8C14—C15—C16125.63 (15)
C6—C7—H7A109.8C14—C15—C17119.51 (15)
O1—C7—H7B109.8C16—C15—C17114.86 (14)
C6—C7—H7B109.8N1—C16—C15179.11 (19)
H7A—C7—H7B108.3N2—C17—C15179.2 (2)
O1—C8—C9123.76 (15)
C6—C1—C2—C3−0.7 (3)C9—C10—C11—C120.1 (3)
C1—C2—C3—C40.2 (4)C10—C11—C12—C13−0.1 (3)
C2—C3—C4—C50.8 (4)C11—C12—C13—C8−0.3 (2)
C3—C4—C5—C6−1.4 (3)C11—C12—C13—C14−178.75 (16)
C4—C5—C6—C10.9 (3)O1—C8—C13—C12−179.77 (14)
C4—C5—C6—C7−174.84 (18)C9—C8—C13—C120.6 (2)
C2—C1—C6—C50.2 (3)O1—C8—C13—C14−1.2 (2)
C2—C1—C6—C7175.84 (19)C9—C8—C13—C14179.23 (15)
C8—O1—C7—C6−174.52 (13)C12—C13—C14—C15−12.2 (3)
C5—C6—C7—O1−144.67 (16)C8—C13—C14—C15169.29 (17)
C1—C6—C7—O139.7 (2)C13—C14—C15—C16−1.5 (3)
C7—O1—C8—C9−2.6 (2)C13—C14—C15—C17179.08 (17)
C7—O1—C8—C13177.82 (14)C14—C15—C16—N1−176 (100)
O1—C8—C9—C10179.76 (15)C17—C15—C16—N13 (14)
C13—C8—C9—C10−0.7 (2)C14—C15—C17—N2−22 (16)
C8—C9—C10—C110.3 (3)C16—C15—C17—N2159 (16)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzylidenemalononitrile compounds as activators of cell resistance to oxidative stress and modulators of multiple signaling pathways. A structure-activity relationship study.

Authors:  Kyril Turpaev; Mikhail Ermolenko; Thierry Cresteil; Jean Claude Drapier
Journal:  Biochem Pharmacol       Date:  2011-06-02       Impact factor: 5.858

3.  Tyrphostins I: synthesis and biological activity of protein tyrosine kinase inhibitors.

Authors:  A Gazit; P Yaish; C Gilon; A Levitzki
Journal:  J Med Chem       Date:  1989-10       Impact factor: 7.446

4.  Tyrphostins protect neuronal cells from oxidative stress.

Authors:  Yutaka Sagara; Kumiko Ishige; Cindy Tsai; Pamela Maher
Journal:  J Biol Chem       Date:  2002-07-16       Impact factor: 5.157

5.  Prevention of lipopolysaccharide-induced lethal toxicity by tyrosine kinase inhibitors.

Authors:  A Novogrodsky; A Vanichkin; M Patya; A Gazit; N Osherov; A Levitzki
Journal:  Science       Date:  1994-05-27       Impact factor: 47.728

6.  2-[4-(Benz-yloxy)benzyl-idene]malononitrile.

Authors:  Hai-Feng Gan; Xue-Wei Liu; Zheng Fang; Kai Guo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12
  6 in total

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