Literature DB >> 26396795

Crystal structure of 3-hy-droxy-methyl-1,2,3,4-tetra-hydro-isoquinolin-1-one.

Ignez Caracelli1, Camila Lury Hino2, Julio Zukerman-Schpector2, Francisco Carlos Biaggio3, Edward R T Tiekink4.   

Abstract

In the title compound, C10H11NO2, two independent but virtually superimposable mol-ecules, A and B, comprise the asymmetric unit. The heterocyclic ring in each mol-ecule has a screw-boat conformation, and the methyl-hydroxyl group occupies a position to one side of this ring with N-C-C-O torsion angles of -55.30 (15) (mol-ecule A) and -55.94 (16)° (mol-ecule B). In the crystal, O-H⋯O and N-H⋯O hydrogen bonding leads to 11-membered {⋯HNCO⋯HO⋯HNC2O} heterosynthons, involving three different mol-ecules, which are edge-shared to generate a supra-molecular chain along the a axis. Inter-actions of the type C-H⋯O provide additional stability to the chains, and link these into a three-dimensional architecture.

Entities:  

Keywords:  conformation; crystal structure; hydrogen bonding

Year:  2015        PMID: 26396795      PMCID: PMC4571395          DOI: 10.1107/S2056989015012670

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background, including medicinal potential, to compounds related to the title compound, see: Biaggio et al. (2007 ▸); Grunewald et al. (1999 ▸); Zoretic & Soja (1977 ▸). For additional conformational analysis, see: Cremer & Pople (1975 ▸).

Experimental

Crystal data

C10H11NO2 M = 177.20 Orthorhombic, a = 6.2846 (1) Å b = 13.8914 (1) Å c = 19.5592 (2) Å V = 1707.56 (3) Å3 Z = 8 Cu Kα radiation μ = 0.79 mm−1 T = 100 K 0.35 × 0.25 × 0.15 mm

Data collection

Agilent SuperNova CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.882, T max = 1.000 6258 measured reflections 3358 independent reflections 3336 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.070 S = 1.06 3358 reflections 251 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack x determined using 1359 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: −0.05 (6)

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2014 (Burla et al., 2015 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸), QMOL (Gans & Shalloway, 2001 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015012670/hg5449sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015012670/hg5449Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012670/hg5449Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015012670/hg5449fig1.tif Reaction scheme for the preparation of the title compound. Click here for additional data file. . DOI: 10.1107/S2056989015012670/hg5449fig2.tif The mol­ecular structures of the two independent mol­ecules in the title compound showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. Click here for additional data file. A B . DOI: 10.1107/S2056989015012670/hg5449fig3.tif Superimposition of the two independent mol­ecules. Mol­ecule A is shown in blue and B in red. The mol­ecules have been superimposed such that the benzene rings are overlapped. Click here for additional data file. a . DOI: 10.1107/S2056989015012670/hg5449fig4.tif A view of the supra­molecular chain sustained by O—H⋯O and N—H⋯O hydrogen bonds (orange and blue dashed lines, respectively) and aligned along the a axis in the crystal packing. Click here for additional data file. a . DOI: 10.1107/S2056989015012670/hg5449fig5.tif A view in projection down the a axis of the unit-cell contents. The O—H⋯O, N—H⋯O and C—H⋯O inter­actions are shown as orange, blue and purple dashed lines, respectively. CCDC reference: 1409827 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H11NO2Dx = 1.379 Mg m3
Mr = 177.20Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, P212121Cell parameters from 5937 reflections
a = 6.2846 (1) Åθ = 3.2–74.2°
b = 13.8914 (1) ŵ = 0.79 mm1
c = 19.5592 (2) ÅT = 100 K
V = 1707.56 (3) Å3Prism, colourless
Z = 80.35 × 0.25 × 0.15 mm
F(000) = 752
Agilent SuperNova CCD diffractometer3336 reflections with I > 2σ(I)
Radiation source: SuperNova (Cu) X-ray SourceRint = 0.011
ω scansθmax = 74.3°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −7→7
Tmin = 0.882, Tmax = 1.000k = −17→17
6258 measured reflectionsl = −14→24
3358 independent reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.026w = 1/[σ2(Fo2) + (0.0483P)2 + 0.1971P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.070(Δ/σ)max = 0.001
S = 1.06Δρmax = 0.15 e Å3
3358 reflectionsΔρmin = −0.29 e Å3
251 parametersAbsolute structure: Flack x determined using 1359 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
4 restraintsAbsolute structure parameter: −0.05 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.62669 (16)0.73762 (7)0.18705 (5)0.0180 (2)
O21.32523 (16)0.66602 (7)0.10231 (5)0.0168 (2)
H2O1.424 (3)0.6888 (18)0.1273 (11)0.049 (7)*
N10.91512 (19)0.75379 (8)0.11906 (6)0.0150 (2)
H1N0.887 (3)0.6996 (10)0.0994 (9)0.021 (5)*
C10.7850 (2)0.78505 (10)0.16823 (6)0.0144 (3)
C20.8387 (2)0.87911 (10)0.20099 (7)0.0156 (3)
C30.6905 (2)0.92359 (11)0.24371 (7)0.0195 (3)
H30.55480.89500.25070.023*
C40.7411 (3)1.00942 (11)0.27601 (8)0.0228 (3)
H40.63971.04010.30470.027*
C50.9411 (3)1.05064 (11)0.26623 (8)0.0212 (3)
H50.97641.10910.28870.025*
C61.0884 (2)1.00671 (10)0.22384 (7)0.0187 (3)
H61.22401.03550.21720.022*
C71.0392 (2)0.92024 (10)0.19065 (7)0.0158 (3)
C81.1995 (2)0.86671 (10)0.14844 (7)0.0169 (3)
H8A1.28100.82260.17840.020*
H8B1.30080.91320.12820.020*
C91.0952 (2)0.80877 (10)0.09148 (7)0.0153 (3)
H91.04050.85440.05610.018*
C101.2538 (2)0.74041 (10)0.05779 (7)0.0163 (3)
H10A1.18630.71080.01720.020*
H10B1.37830.77790.04190.020*
O30.10908 (16)0.52866 (7)−0.04188 (5)0.0200 (2)
O40.80454 (17)0.57641 (7)0.04790 (5)0.0183 (2)
H4O0.904 (3)0.5612 (18)0.0200 (11)0.050 (7)*
N20.3944 (2)0.49397 (8)0.02382 (6)0.0165 (2)
H2N0.373 (4)0.5458 (11)0.0481 (9)0.028 (5)*
C110.2649 (2)0.47641 (10)−0.02887 (7)0.0160 (3)
C120.3141 (2)0.39062 (10)−0.07222 (7)0.0174 (3)
C130.1653 (2)0.35932 (11)−0.12001 (7)0.0217 (3)
H130.03270.3916−0.12420.026*
C140.2107 (3)0.28085 (12)−0.16165 (7)0.0241 (3)
H140.10920.2591−0.19410.029*
C150.4058 (3)0.23446 (11)−0.15537 (8)0.0249 (3)
H150.43700.1805−0.18350.030*
C160.5553 (3)0.26632 (11)−0.10831 (8)0.0230 (3)
H160.68830.2342−0.10470.028*
C170.5124 (2)0.34507 (10)−0.06620 (7)0.0188 (3)
C180.6750 (2)0.38637 (10)−0.01815 (8)0.0208 (3)
H18A0.76100.4350−0.04280.025*
H18B0.77200.3344−0.00310.025*
C190.5744 (2)0.43317 (10)0.04445 (7)0.0179 (3)
H190.51970.38110.07510.022*
C200.7337 (2)0.49417 (10)0.08474 (7)0.0194 (3)
H20A0.66650.51550.12790.023*
H20B0.85830.45390.09660.023*
U11U22U33U12U13U23
O10.0137 (5)0.0198 (5)0.0204 (5)−0.0022 (4)0.0008 (4)−0.0006 (4)
O20.0153 (5)0.0148 (5)0.0203 (5)0.0004 (4)−0.0012 (4)−0.0004 (4)
N10.0141 (5)0.0138 (5)0.0171 (5)−0.0010 (4)−0.0001 (4)−0.0022 (4)
C10.0131 (6)0.0157 (6)0.0145 (6)0.0020 (5)−0.0029 (5)0.0016 (5)
C20.0162 (7)0.0161 (6)0.0146 (6)0.0009 (5)−0.0017 (5)0.0005 (5)
C30.0163 (7)0.0229 (7)0.0193 (6)0.0007 (6)0.0009 (6)−0.0021 (5)
C40.0222 (7)0.0242 (7)0.0219 (7)0.0035 (6)0.0021 (6)−0.0061 (6)
C50.0247 (8)0.0180 (7)0.0210 (7)−0.0005 (6)−0.0045 (6)−0.0050 (5)
C60.0193 (7)0.0172 (6)0.0196 (7)−0.0026 (6)−0.0027 (5)−0.0004 (5)
C70.0170 (7)0.0154 (6)0.0152 (6)0.0011 (5)−0.0021 (5)0.0015 (5)
C80.0131 (6)0.0162 (6)0.0216 (7)−0.0017 (5)0.0005 (6)−0.0017 (5)
C90.0137 (6)0.0153 (6)0.0167 (6)0.0003 (5)0.0015 (5)0.0009 (5)
C100.0158 (6)0.0179 (6)0.0152 (6)0.0013 (5)0.0013 (5)0.0013 (5)
O30.0151 (5)0.0225 (5)0.0225 (5)0.0022 (4)−0.0001 (4)−0.0020 (4)
O40.0162 (5)0.0161 (5)0.0227 (5)−0.0004 (4)0.0016 (4)−0.0021 (4)
N20.0163 (6)0.0150 (5)0.0183 (5)0.0013 (5)0.0003 (5)−0.0032 (4)
C110.0143 (6)0.0167 (6)0.0172 (6)−0.0033 (5)0.0034 (5)0.0004 (5)
C120.0179 (7)0.0169 (6)0.0174 (6)−0.0030 (5)0.0034 (5)−0.0017 (5)
C130.0191 (7)0.0253 (7)0.0206 (7)−0.0040 (6)0.0026 (6)−0.0014 (6)
C140.0275 (8)0.0260 (7)0.0187 (7)−0.0089 (6)0.0018 (6)−0.0036 (6)
C150.0348 (9)0.0187 (6)0.0212 (7)−0.0057 (7)0.0083 (6)−0.0046 (6)
C160.0250 (7)0.0173 (7)0.0267 (7)0.0007 (6)0.0057 (6)−0.0022 (6)
C170.0195 (7)0.0159 (6)0.0210 (6)−0.0020 (5)0.0034 (5)−0.0006 (5)
C180.0156 (7)0.0180 (6)0.0288 (7)0.0018 (5)−0.0001 (6)−0.0040 (6)
C190.0169 (6)0.0153 (6)0.0215 (7)0.0011 (5)−0.0018 (5)0.0019 (5)
C200.0185 (7)0.0200 (6)0.0198 (6)−0.0005 (6)−0.0026 (5)0.0005 (5)
O1—C11.2486 (17)O3—C111.2454 (18)
O2—C101.4239 (16)O4—C201.4220 (17)
O2—H2O0.849 (13)O4—H4O0.855 (13)
N1—C11.3351 (18)N2—C111.3356 (18)
N1—C91.4680 (17)N2—C191.4682 (18)
N1—H1N0.863 (12)N2—H2N0.872 (12)
C1—C21.4939 (18)C11—C121.4949 (18)
C2—C31.396 (2)C12—C131.392 (2)
C2—C71.398 (2)C12—C171.402 (2)
C3—C41.386 (2)C13—C141.390 (2)
C3—H30.9500C13—H130.9500
C4—C51.395 (2)C14—C151.391 (2)
C4—H40.9500C14—H140.9500
C5—C61.385 (2)C15—C161.388 (2)
C5—H50.9500C15—H150.9500
C6—C71.400 (2)C16—C171.396 (2)
C6—H60.9500C16—H160.9500
C7—C81.4997 (19)C17—C181.502 (2)
C8—C91.5227 (18)C18—C191.524 (2)
C8—H8A0.9900C18—H18A0.9900
C8—H8B0.9900C18—H18B0.9900
C9—C101.5263 (19)C19—C201.5303 (19)
C9—H91.0000C19—H191.0000
C10—H10A0.9900C20—H20A0.9900
C10—H10B0.9900C20—H20B0.9900
C10—O2—H2O108.1 (18)C20—O4—H4O110.7 (17)
C1—N1—C9124.60 (12)C11—N2—C19125.20 (12)
C1—N1—H1N118.7 (14)C11—N2—H2N118.6 (14)
C9—N1—H1N116.5 (14)C19—N2—H2N116.2 (14)
O1—C1—N1121.92 (13)O3—C11—N2122.02 (13)
O1—C1—C2121.01 (12)O3—C11—C12120.76 (12)
N1—C1—C2117.06 (12)N2—C11—C12117.21 (12)
C3—C2—C7120.47 (13)C13—C12—C17120.82 (13)
C3—C2—C1119.55 (13)C13—C12—C11119.41 (13)
C7—C2—C1119.94 (12)C17—C12—C11119.73 (13)
C4—C3—C2120.03 (14)C14—C13—C12120.04 (15)
C4—C3—H3120.0C14—C13—H13120.0
C2—C3—H3120.0C12—C13—H13120.0
C3—C4—C5119.83 (14)C13—C14—C15119.50 (14)
C3—C4—H4120.1C13—C14—H14120.3
C5—C4—H4120.1C15—C14—H14120.3
C6—C5—C4120.26 (13)C16—C15—C14120.51 (14)
C6—C5—H5119.9C16—C15—H15119.7
C4—C5—H5119.9C14—C15—H15119.7
C5—C6—C7120.54 (14)C15—C16—C17120.70 (15)
C5—C6—H6119.7C15—C16—H16119.7
C7—C6—H6119.7C17—C16—H16119.7
C2—C7—C6118.86 (13)C16—C17—C12118.42 (14)
C2—C7—C8118.83 (12)C16—C17—C18122.47 (14)
C6—C7—C8122.17 (13)C12—C17—C18119.00 (12)
C7—C8—C9112.08 (12)C17—C18—C19112.53 (12)
C7—C8—H8A109.2C17—C18—H18A109.1
C9—C8—H8A109.2C19—C18—H18A109.1
C7—C8—H8B109.2C17—C18—H18B109.1
C9—C8—H8B109.2C19—C18—H18B109.1
H8A—C8—H8B107.9H18A—C18—H18B107.8
N1—C9—C8109.74 (11)N2—C19—C18110.14 (11)
N1—C9—C10109.78 (11)N2—C19—C20109.10 (11)
C8—C9—C10111.33 (11)C18—C19—C20112.23 (12)
N1—C9—H9108.6N2—C19—H19108.4
C8—C9—H9108.6C18—C19—H19108.4
C10—C9—H9108.6C20—C19—H19108.4
O2—C10—C9113.17 (11)O4—C20—C19112.88 (11)
O2—C10—H10A108.9O4—C20—H20A109.0
C9—C10—H10A108.9C19—C20—H20A109.0
O2—C10—H10B108.9O4—C20—H20B109.0
C9—C10—H10B108.9C19—C20—H20B109.0
H10A—C10—H10B107.8H20A—C20—H20B107.8
C9—N1—C1—O1175.75 (12)C19—N2—C11—O3176.74 (13)
C9—N1—C1—C2−5.26 (19)C19—N2—C11—C12−3.2 (2)
O1—C1—C2—C3−12.24 (19)O3—C11—C12—C13−11.1 (2)
N1—C1—C2—C3168.76 (13)N2—C11—C12—C13168.84 (13)
O1—C1—C2—C7165.51 (12)O3—C11—C12—C17166.40 (13)
N1—C1—C2—C7−13.49 (18)N2—C11—C12—C17−13.68 (19)
C7—C2—C3—C40.3 (2)C17—C12—C13—C141.2 (2)
C1—C2—C3—C4178.05 (13)C11—C12—C13—C14178.68 (13)
C2—C3—C4—C5−0.6 (2)C12—C13—C14—C15−0.4 (2)
C3—C4—C5—C60.7 (2)C13—C14—C15—C16−0.4 (2)
C4—C5—C6—C7−0.4 (2)C14—C15—C16—C170.3 (2)
C3—C2—C7—C60.0 (2)C15—C16—C17—C120.5 (2)
C1—C2—C7—C6−177.76 (12)C15—C16—C17—C18−175.52 (14)
C3—C2—C7—C8175.65 (13)C13—C12—C17—C16−1.3 (2)
C1—C2—C7—C8−2.08 (18)C11—C12—C17—C16−178.75 (13)
C5—C6—C7—C20.1 (2)C13—C12—C17—C18174.88 (13)
C5—C6—C7—C8−175.46 (13)C11—C12—C17—C18−2.57 (19)
C2—C7—C8—C933.21 (17)C16—C17—C18—C19−151.24 (14)
C6—C7—C8—C9−151.25 (13)C12—C17—C18—C1932.74 (18)
C1—N1—C9—C835.96 (18)C11—N2—C19—C1832.98 (18)
C1—N1—C9—C10158.62 (12)C11—N2—C19—C20156.58 (12)
C7—C8—C9—N1−47.52 (15)C17—C18—C19—N2−45.45 (16)
C7—C8—C9—C10−169.26 (11)C17—C18—C19—C20−167.21 (12)
N1—C9—C10—O2−55.30 (15)N2—C19—C20—O4−55.94 (16)
C8—C9—C10—O266.42 (15)C18—C19—C20—O466.41 (16)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O1i0.85 (1)1.86 (1)2.7066 (14)176 (3)
O4—H4O···O3i0.86 (1)1.83 (1)2.6808 (15)178 (3)
N1—H1N···O40.86 (1)2.05 (1)2.9141 (15)176 (2)
N2—H2N···O2ii0.87 (1)2.00 (1)2.8737 (15)179 (2)
C4—H4···O2iii0.952.533.2512 (18)132
C8—H8A···O1i0.992.483.3157 (16)142
C18—H18A···O3i0.992.553.4007 (16)145
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H2OO1i 0.85(1)1.86(1)2.7066(14)176(3)
O4H4OO3i 0.86(1)1.83(1)2.6808(15)178(3)
N1H1NO40.86(1)2.05(1)2.9141(15)176(2)
N2H2NO2ii 0.87(1)2.00(1)2.8737(15)179(2)
C4H4O2iii 0.952.533.2512(18)132
C8H8AO1i 0.992.483.3157(16)142
C18H18AO3i 0.992.553.4007(16)145

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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