Literature DB >> 26396793

Crystal structure of 2,5-dimethyl-3-(2-methyl-phenyl-sulfin-yl)-1-benzo-furan.

Hong Dae Choi1, Uk Lee2.   

Abstract

In the title compound, C17H16O2S, the dihedral angle between the benzo-furan ring system [r.m.s. deviation = 0.009 (1) Å] and the 2-methyl-phenyl ring is 86.72 (4)°. In the crystal, weak C-H⋯O hydrogen bonds link the mol-ecules into columns along the b-axis direction.

Entities:  

Keywords:  2-methyl­phen­yl; C—H⋯O hydrogen bonds; benzo­furan; crystal structure

Year:  2015        PMID: 26396793      PMCID: PMC4571393          DOI: 10.1107/S2056989015012773

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the pharmacological properties of benzo­furan compounds, see: Aslam et al. (2009 ▸); Galal et al. (2009 ▸); Howlett et al. (1999 ▸); Wahab Khan et al. (2005 ▸); Ono et al. (2002 ▸). For natural products with a benzo­furan ring, see: Akgul & Anil (2003 ▸); Soekamto et al. (2003 ▸). For a related structure, see: Choi et al. (2012 ▸). For further synthetic details, see: Choi et al. (1999 ▸).

Experimental

Crystal data

C17H16O2S M = 284.36 Monoclinic, a = 10.8458 (2) Å b = 8.0139 (1) Å c = 16.4295 (2) Å β = 96.709 (1)° V = 1418.23 (4) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 173 K 0.44 × 0.33 × 0.30 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.692, T max = 0.746 25176 measured reflections 3529 independent reflections 3091 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.103 S = 1.05 3529 reflections 184 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.27 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 1998 ▸); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015012773/cv5492sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015012773/cv5492Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012773/cv5492Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015012773/cv5492fig1.tif The mol­ecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Click here for additional data file. x y z x y z x y z x y z . DOI: 10.1107/S2056989015012773/cv5492fig2.tif A view of the C—H⋯O hydrogen bonds (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding were omitted for clarity. [Symmetry codes: (i) − x + , y − , − z + ; (ii) x, y − 1, z; (iii) − x + , y + , − z + ; (iv) x, y + 1, z.] CCDC reference: 1410058 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H16O2SF(000) = 600
Mr = 284.36Dx = 1.332 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.8458 (2) ÅCell parameters from 9125 reflections
b = 8.0139 (1) Åθ = 2.5–28.1°
c = 16.4295 (2) ŵ = 0.23 mm1
β = 96.709 (1)°T = 173 K
V = 1418.23 (4) Å3Block, colourless
Z = 40.44 × 0.33 × 0.30 mm
Bruker SMART APEXII CCD diffractometer3529 independent reflections
Radiation source: rotating anode3091 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.033
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.1°
φ and ω scansh = −14→14
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −10→10
Tmin = 0.692, Tmax = 0.746l = −21→20
25176 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: difference Fourier map
wR(F2) = 0.103H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0515P)2 + 0.5244P] where P = (Fo2 + 2Fc2)/3
3529 reflections(Δ/σ)max = 0.001
184 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. 1H NMR (δ p.p.m., CDCl3, 400 Hz): 8.35 (d, J = 7.88 Hz, 1H), 7.53–7.57 (m, 1H), 7.38–7.42 (m, 1H), 7.26 (d, J = 7.02 Hz, 1H), 7.15 (d, J = 7.52 Hz, 1H), 6.98–7.03 (m, 2H), 2.73 (s, 3H), 2.25 (s, 3H), 2.13 (s, 3H),
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S10.17973 (3)0.37549 (4)0.52324 (2)0.02675 (11)
O10.17654 (10)0.24730 (14)0.75315 (6)0.0349 (2)
O20.21361 (11)0.55407 (13)0.51308 (6)0.0381 (3)
C10.21664 (12)0.31930 (17)0.62666 (8)0.0250 (3)
C20.33439 (12)0.30795 (16)0.67783 (8)0.0236 (3)
C30.45906 (12)0.33131 (16)0.66789 (8)0.0255 (3)
H30.48250.36190.61600.031*
C40.54881 (13)0.30933 (18)0.73475 (9)0.0307 (3)
C50.51194 (15)0.2614 (2)0.81059 (9)0.0363 (3)
H50.57400.24560.85570.044*
C60.38937 (16)0.23627 (19)0.82225 (9)0.0355 (3)
H60.36560.20310.87370.043*
C70.30345 (13)0.26225 (18)0.75471 (8)0.0287 (3)
C80.12638 (13)0.28335 (19)0.67489 (9)0.0304 (3)
C90.68418 (15)0.3366 (2)0.72713 (11)0.0434 (4)
H9A0.69410.36920.67080.065*
H9B0.73010.23310.74080.065*
H9C0.71650.42520.76480.065*
C10−0.01086 (15)0.2761 (3)0.65979 (11)0.0452 (4)
H10A−0.03800.30870.60300.068*
H10B−0.04660.35270.69720.068*
H10C−0.03880.16220.66910.068*
C110.29473 (12)0.25559 (17)0.47850 (7)0.0236 (3)
C120.38520 (14)0.34425 (18)0.44408 (8)0.0297 (3)
H120.38930.46220.44930.036*
C130.46993 (15)0.2599 (2)0.40181 (9)0.0365 (3)
H130.53310.31970.37880.044*
C140.46160 (15)0.0895 (2)0.39362 (9)0.0363 (3)
H140.51830.03150.36390.044*
C150.37125 (14)0.00203 (19)0.42834 (9)0.0338 (3)
H150.3675−0.11590.42250.041*
C160.28551 (13)0.08234 (18)0.47168 (8)0.0285 (3)
C170.18974 (17)−0.0156 (2)0.50997 (12)0.0464 (4)
H17A0.2083−0.01190.56980.070*
H17B0.1907−0.13180.49140.070*
H17C0.10750.03260.49380.070*
U11U22U33U12U13U23
S10.02608 (18)0.03273 (19)0.02139 (17)0.00435 (12)0.00261 (12)0.00056 (12)
O10.0357 (6)0.0446 (6)0.0266 (5)−0.0031 (5)0.0128 (4)0.0039 (4)
O20.0555 (7)0.0288 (5)0.0317 (5)0.0098 (5)0.0130 (5)0.0029 (4)
C10.0253 (6)0.0285 (6)0.0219 (6)0.0001 (5)0.0053 (5)0.0000 (5)
C20.0290 (6)0.0229 (6)0.0194 (6)0.0002 (5)0.0046 (5)−0.0003 (4)
C30.0266 (6)0.0280 (6)0.0220 (6)−0.0007 (5)0.0026 (5)−0.0005 (5)
C40.0314 (7)0.0304 (7)0.0292 (7)0.0008 (5)−0.0014 (6)−0.0019 (5)
C50.0433 (8)0.0393 (8)0.0238 (7)0.0031 (6)−0.0064 (6)0.0009 (6)
C60.0515 (9)0.0353 (8)0.0198 (6)0.0018 (7)0.0052 (6)0.0032 (5)
C70.0331 (7)0.0312 (7)0.0230 (6)−0.0009 (5)0.0084 (5)0.0008 (5)
C80.0289 (7)0.0362 (7)0.0275 (7)−0.0020 (5)0.0089 (5)−0.0005 (5)
C90.0293 (8)0.0558 (10)0.0424 (9)−0.0019 (7)−0.0066 (7)−0.0019 (7)
C100.0281 (8)0.0646 (11)0.0451 (9)−0.0056 (7)0.0132 (7)−0.0002 (8)
C110.0245 (6)0.0286 (7)0.0171 (5)0.0019 (5)0.0003 (5)−0.0007 (4)
C120.0344 (7)0.0309 (7)0.0249 (6)−0.0023 (5)0.0073 (5)−0.0004 (5)
C130.0363 (8)0.0450 (9)0.0304 (7)0.0001 (6)0.0128 (6)0.0006 (6)
C140.0373 (8)0.0457 (9)0.0263 (7)0.0124 (7)0.0049 (6)−0.0039 (6)
C150.0418 (8)0.0299 (7)0.0285 (7)0.0069 (6)−0.0015 (6)−0.0039 (5)
C160.0313 (7)0.0300 (7)0.0232 (6)−0.0014 (5)−0.0011 (5)−0.0005 (5)
C170.0526 (10)0.0321 (8)0.0570 (11)−0.0126 (7)0.0168 (8)−0.0016 (7)
S1—O21.4918 (11)C9—H9B0.9800
S1—C11.7580 (13)C9—H9C0.9800
S1—C111.7982 (13)C10—H10A0.9800
O1—C81.3671 (18)C10—H10B0.9800
O1—C71.3789 (17)C10—H10C0.9800
C1—C81.3604 (18)C11—C121.3846 (19)
C1—C21.4476 (18)C11—C161.3955 (19)
C2—C71.3932 (17)C12—C131.390 (2)
C2—C31.3934 (18)C12—H120.9500
C3—C41.3912 (19)C13—C141.375 (2)
C3—H30.9500C13—H130.9500
C4—C51.406 (2)C14—C151.381 (2)
C4—C91.504 (2)C14—H140.9500
C5—C61.380 (2)C15—C161.393 (2)
C5—H50.9500C15—H150.9500
C6—C71.379 (2)C16—C171.498 (2)
C6—H60.9500C17—H17A0.9800
C8—C101.481 (2)C17—H17B0.9800
C9—H9A0.9800C17—H17C0.9800
O2—S1—C1108.82 (6)H9A—C9—H9C109.5
O2—S1—C11105.97 (6)H9B—C9—H9C109.5
C1—S1—C1199.66 (6)C8—C10—H10A109.5
C8—O1—C7106.61 (10)C8—C10—H10B109.5
C8—C1—C2107.12 (12)H10A—C10—H10B109.5
C8—C1—S1121.27 (11)C8—C10—H10C109.5
C2—C1—S1131.55 (10)H10A—C10—H10C109.5
C7—C2—C3118.78 (12)H10B—C10—H10C109.5
C7—C2—C1104.68 (11)C12—C11—C16121.69 (12)
C3—C2—C1136.54 (12)C12—C11—S1116.82 (10)
C4—C3—C2119.30 (13)C16—C11—S1121.19 (10)
C4—C3—H3120.3C11—C12—C13119.74 (14)
C2—C3—H3120.3C11—C12—H12120.1
C3—C4—C5119.29 (13)C13—C12—H12120.1
C3—C4—C9121.04 (14)C14—C13—C12119.48 (14)
C5—C4—C9119.67 (14)C14—C13—H13120.3
C6—C5—C4122.77 (13)C12—C13—H13120.3
C6—C5—H5118.6C13—C14—C15120.36 (14)
C4—C5—H5118.6C13—C14—H14119.8
C7—C6—C5115.96 (13)C15—C14—H14119.8
C7—C6—H6122.0C14—C15—C16121.67 (14)
C5—C6—H6122.0C14—C15—H15119.2
O1—C7—C6125.53 (13)C16—C15—H15119.2
O1—C7—C2110.59 (12)C15—C16—C11117.05 (13)
C6—C7—C2123.88 (14)C15—C16—C17120.63 (14)
C1—C8—O1110.99 (12)C11—C16—C17122.31 (13)
C1—C8—C10133.48 (14)C16—C17—H17A109.5
O1—C8—C10115.53 (12)C16—C17—H17B109.5
C4—C9—H9A109.5H17A—C17—H17B109.5
C4—C9—H9B109.5C16—C17—H17C109.5
H9A—C9—H9B109.5H17A—C17—H17C109.5
C4—C9—H9C109.5H17B—C17—H17C109.5
D—H···AD—HH···AD···AD—H···A
C6—H6···O2i0.952.453.3772 (18)166
C17—H17B···O2ii0.982.553.458 (2)154
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6O2i 0.952.453.3772(18)166
C17H17BO2ii 0.982.553.458(2)154

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Benzofuran derivatives as Abeta-aggregate-specific imaging agents for Alzheimer's disease.

Authors:  Masahiro Ono; Mei-Ping Kung; Catherine Hou; Hank F Kung
Journal:  Nucl Med Biol       Date:  2002-08       Impact factor: 2.408

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

7.  2,5-Dimethyl-3-(4-methyl-phenyl-sulfin-yl)-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  8 in total

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