Literature DB >> 26396788

Crystal structure of 1-iodo-3-{[4-(tert-butyl-sulfan-yl)phen-yl]ethyn-yl}azulene.

Sebastian Förster1, Wilhelm Seichter1, Edwin Weber1.   

Abstract

The title compound, C20H19IS, features a 1,3-disubstituted azulene involving an ethynylene elongated 4-(tert-butyl-sulfanyl)-phenyl sidearm and an iodine atom as the substituents. The azulene ring system is almost planar (r.m.s. deviation = 0.012 Å) and subtends a dihedral angle of 35.7 (1)° with the benzene ring. As a result of the inherent dipole character of the azulene core, a supra-molecular π-π dimer [separation between the centroids of the five- and seven-membered rings = 3.7632 (10) Å] with anti-parallel orientated mol-ecules can be observed in the crystal. The packing is consolidated by an unusual I⋯π(acetyl-ene) contact [I⋯Cg = 3.34 Å, C-I⋯Cg = 173.3°], and a very weak C-H⋯π inter-action is also found in the structure, with the azulene five-membered ring as the acceptor.

Entities:  

Keywords:  1,3-disubstitution; C—H⋯π inter­action; I⋯π contact; azulene; crystal structure

Year:  2015        PMID: 26396788      PMCID: PMC4571388          DOI: 10.1107/S2056989015012542

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to this work, see: Strachota et al. (2008 ▸); Xia et al. (2014 ▸). For related structures, see: Förster et al. (2012 ▸, 2014 ▸). For the synthesis of the starting compounds 1,3-di­iodo­azulene and 1-(tert-butyl­sulfan­yl)-4-ethynyl­benzene, see: Wakabayashi et al. (1998 ▸); Mayor et al. (2003 ▸). For the Sonogashira–Hagihara cross-coupling reaction, see: Sonogashira et al. (1975 ▸). For I⋯π contacts, see: Forni et al. (2012 ▸). For C—H⋯π inter­actions, see: Nishio et al. (2009 ▸).

Experimental

Crystal data

C22H19IS M = 442.33 Monoclinic, a = 12.7222 (2) Å b = 11.9892 (2) Å c = 13.7895 (3) Å β = 113.851 (1)° V = 1923.68 (6) Å3 Z = 4 Mo Kα radiation μ = 1.77 mm−1 T = 100 K 0.28 × 0.20 × 0.13 mm

Data collection

Bruker Kappa Apex CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.637, T max = 0.802 23474 measured reflections 5163 independent reflections 4688 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.059 S = 1.04 5163 reflections 220 parameters H-atom parameters constrained Δρmax = 1.37 e Å−3 Δρmin = −0.39 e Å−3

Data collection: APEX2 (Bruker, 2010 ▸); cell refinement: SAINT-NT (Sheldrick, 2008 ▸); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015012542/hb7447sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015012542/hb7447Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012542/hb7447Isup3.tif Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012542/hb7447Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015012542/hb7447fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. c . DOI: 10.1107/S2056989015012542/hb7447fig2.tif A view along the c axis of the crystal packing of the title compound. CCDC reference: 1409619 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H19ISF(000) = 880
Mr = 442.33Dx = 1.527 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.7222 (2) ÅCell parameters from 9945 reflections
b = 11.9892 (2) Åθ = 2.5–33.1°
c = 13.7895 (3) ŵ = 1.77 mm1
β = 113.851 (1)°T = 100 K
V = 1923.68 (6) Å3Irregular, violet
Z = 40.28 × 0.20 × 0.13 mm
Bruker Kappa Apex CCD diffractometer4688 reflections with I > 2σ(I)
phi and ω scansRint = 0.024
Absorption correction: multi-scan (SADABS; Bruker, 2008)θmax = 29.1°, θmin = 1.8°
Tmin = 0.637, Tmax = 0.802h = −17→17
23474 measured reflectionsk = −16→16
5163 independent reflectionsl = −18→18
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.021H-atom parameters constrained
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0333P)2 + 0.9341P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
5163 reflectionsΔρmax = 1.37 e Å3
220 parametersΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
I10.84013 (2)0.46782 (2)0.23899 (2)0.02206 (5)
S20.11506 (4)−0.30969 (4)0.07255 (4)0.02563 (10)
C10.69313 (13)0.37992 (13)0.14949 (13)0.0173 (3)
C20.64454 (13)0.29623 (13)0.18826 (13)0.0179 (3)
H20.67330.27100.25960.022*
C30.54571 (13)0.25519 (13)0.10422 (13)0.0173 (3)
C40.53172 (13)0.31415 (13)0.01096 (13)0.0163 (3)
C50.44468 (14)0.29644 (14)−0.08807 (14)0.0204 (3)
H50.39160.2391−0.09190.024*
C60.42455 (15)0.35115 (15)−0.18259 (14)0.0236 (3)
H60.36000.3256−0.24260.028*
C70.48585 (16)0.43818 (16)−0.20148 (14)0.0238 (3)
H70.45510.4657−0.27210.029*
C80.58518 (16)0.49110 (16)−0.13288 (16)0.0249 (4)
H80.61400.5480−0.16340.030*
C90.64791 (15)0.47161 (13)−0.02540 (15)0.0207 (3)
H90.71420.51680.00760.025*
C100.62711 (13)0.39541 (13)0.04023 (13)0.0160 (3)
C110.47274 (14)0.16724 (14)0.10849 (14)0.0197 (3)
C120.41110 (14)0.09113 (14)0.10767 (14)0.0214 (3)
C130.34086 (13)−0.00436 (14)0.10156 (14)0.0183 (3)
C140.31147 (16)−0.03408 (14)0.18573 (15)0.0230 (4)
H140.33770.00960.24860.028*
C150.24401 (15)−0.12745 (15)0.17689 (14)0.0219 (3)
H150.2249−0.14780.23430.026*
C160.20377 (14)−0.19206 (13)0.08477 (14)0.0188 (3)
C170.23511 (15)−0.16333 (14)0.00239 (15)0.0217 (3)
H170.2099−0.2079−0.05990.026*
C180.30281 (15)−0.07036 (15)0.01021 (14)0.0218 (3)
H180.3234−0.0514−0.04670.026*
C19−0.03091 (15)−0.24833 (16)0.01235 (15)0.0258 (4)
C20−0.05345 (17)−0.19664 (19)−0.09463 (17)0.0337 (4)
H20A−0.1330−0.1700−0.12720.051*
H20B−0.0411−0.2527−0.14070.051*
H20C−0.0008−0.1339−0.08510.051*
C21−0.04654 (19)−0.1617 (2)0.0863 (2)0.0435 (6)
H21A0.0031−0.09740.09170.065*
H21B−0.0259−0.19460.15670.065*
H21C−0.1269−0.13740.05790.065*
C22−0.1104 (2)−0.3474 (2)−0.0007 (2)0.0454 (6)
H22A−0.1904−0.3218−0.02990.068*
H22B−0.0920−0.38240.06840.068*
H22C−0.0999−0.4018−0.04910.068*
U11U22U33U12U13U23
I10.01979 (7)0.02162 (7)0.02101 (7)−0.00596 (4)0.00437 (5)−0.00162 (4)
S20.0270 (2)0.01496 (19)0.0329 (2)−0.00596 (16)0.01011 (19)0.00387 (16)
C10.0149 (7)0.0151 (7)0.0203 (8)−0.0020 (6)0.0054 (6)−0.0022 (6)
C20.0170 (7)0.0161 (7)0.0202 (8)0.0007 (6)0.0070 (6)0.0020 (6)
C30.0165 (7)0.0136 (7)0.0214 (8)−0.0004 (6)0.0071 (6)0.0008 (6)
C40.0162 (7)0.0121 (7)0.0212 (8)0.0000 (5)0.0081 (6)−0.0007 (6)
C50.0202 (7)0.0167 (7)0.0229 (8)−0.0031 (6)0.0073 (7)−0.0020 (6)
C60.0238 (8)0.0243 (9)0.0183 (8)−0.0017 (7)0.0040 (7)−0.0010 (6)
C70.0294 (9)0.0243 (8)0.0176 (8)0.0005 (7)0.0094 (7)0.0021 (6)
C80.0269 (9)0.0213 (8)0.0295 (10)−0.0012 (7)0.0146 (8)0.0059 (7)
C90.0208 (8)0.0174 (8)0.0251 (9)−0.0047 (6)0.0106 (7)−0.0014 (6)
C100.0157 (7)0.0135 (7)0.0193 (7)−0.0006 (5)0.0076 (6)−0.0016 (6)
C110.0178 (7)0.0171 (7)0.0225 (8)0.0009 (6)0.0064 (6)0.0035 (6)
C120.0168 (7)0.0203 (8)0.0244 (8)0.0003 (6)0.0057 (6)0.0055 (6)
C130.0141 (7)0.0153 (7)0.0239 (8)−0.0005 (6)0.0060 (6)0.0037 (6)
C140.0229 (8)0.0243 (9)0.0195 (8)−0.0065 (6)0.0063 (7)−0.0008 (6)
C150.0231 (8)0.0238 (8)0.0190 (8)−0.0051 (6)0.0087 (7)0.0018 (6)
C160.0181 (7)0.0140 (7)0.0240 (8)−0.0013 (6)0.0080 (6)0.0026 (6)
C170.0248 (8)0.0175 (8)0.0269 (9)−0.0028 (6)0.0147 (7)−0.0041 (6)
C180.0240 (8)0.0207 (8)0.0261 (9)−0.0010 (6)0.0157 (7)0.0022 (7)
C190.0210 (8)0.0274 (9)0.0279 (9)−0.0097 (7)0.0087 (7)0.0018 (7)
C200.0284 (9)0.0367 (11)0.0314 (10)−0.0069 (8)0.0072 (8)0.0088 (8)
C210.0270 (10)0.0586 (15)0.0486 (14)−0.0018 (10)0.0191 (10)−0.0132 (11)
C220.0338 (11)0.0454 (13)0.0482 (14)−0.0219 (10)0.0073 (10)0.0110 (11)
I1—C12.0651 (15)C13—C181.398 (3)
S2—C161.7712 (16)C13—C141.402 (2)
S2—C191.8526 (19)C14—C151.386 (2)
C1—C21.394 (2)C14—H140.9500
C1—C101.409 (2)C15—C161.396 (2)
C2—C31.410 (2)C15—H150.9500
C2—H20.9500C16—C171.391 (2)
C3—C41.414 (2)C17—C181.386 (2)
C3—C111.422 (2)C17—H170.9500
C4—C51.383 (2)C18—H180.9500
C4—C101.479 (2)C19—C201.517 (3)
C5—C61.387 (2)C19—C221.523 (3)
C5—H50.9500C19—C211.523 (3)
C6—C71.389 (3)C20—H20A0.9800
C6—H60.9500C20—H20B0.9800
C7—C81.388 (3)C20—H20C0.9800
C7—H70.9500C21—H21A0.9800
C8—C91.390 (3)C21—H21B0.9800
C8—H80.9500C21—H21C0.9800
C9—C101.385 (2)C22—H22A0.9800
C9—H90.9500C22—H22B0.9800
C11—C121.200 (2)C22—H22C0.9800
C12—C131.434 (2)
C16—S2—C19102.19 (8)C13—C14—H14120.1
C2—C1—C10109.87 (14)C14—C15—C16120.96 (16)
C2—C1—I1124.97 (12)C14—C15—H15119.5
C10—C1—I1125.15 (12)C16—C15—H15119.5
C1—C2—C3108.81 (14)C17—C16—C15119.00 (15)
C1—C2—H2125.6C17—C16—S2120.11 (13)
C3—C2—H2125.6C15—C16—S2120.89 (13)
C2—C3—C4108.39 (14)C18—C17—C16120.67 (16)
C2—C3—C11127.23 (15)C18—C17—H17119.7
C4—C3—C11124.35 (15)C16—C17—H17119.7
C5—C4—C3125.25 (15)C17—C18—C13120.22 (16)
C5—C4—C10127.69 (15)C17—C18—H18119.9
C3—C4—C10107.06 (14)C13—C18—H18119.9
C4—C5—C6128.67 (16)C20—C19—C22110.38 (17)
C4—C5—H5115.7C20—C19—C21110.34 (19)
C6—C5—H5115.7C22—C19—C21110.54 (18)
C5—C6—C7128.83 (17)C20—C19—S2111.05 (13)
C5—C6—H6115.6C22—C19—S2103.93 (14)
C7—C6—H6115.6C21—C19—S2110.44 (14)
C8—C7—C6129.86 (17)C19—C20—H20A109.5
C8—C7—H7115.1C19—C20—H20B109.5
C6—C7—H7115.1H20A—C20—H20B109.5
C7—C8—C9128.44 (17)C19—C20—H20C109.5
C7—C8—H8115.8H20A—C20—H20C109.5
C9—C8—H8115.8H20B—C20—H20C109.5
C10—C9—C8128.97 (16)C19—C21—H21A109.5
C10—C9—H9115.5C19—C21—H21B109.5
C8—C9—H9115.5H21A—C21—H21B109.5
C9—C10—C1126.65 (15)C19—C21—H21C109.5
C9—C10—C4127.49 (15)H21A—C21—H21C109.5
C1—C10—C4105.87 (13)H21B—C21—H21C109.5
C12—C11—C3176.91 (19)C19—C22—H22A109.5
C11—C12—C13175.55 (19)C19—C22—H22B109.5
C18—C13—C14119.41 (15)H22A—C22—H22B109.5
C18—C13—C12119.05 (16)C19—C22—H22C109.5
C14—C13—C12121.53 (16)H22A—C22—H22C109.5
C15—C14—C13119.71 (16)H22B—C22—H22C109.5
C15—C14—H14120.1
C10—C1—C2—C30.28 (19)C5—C4—C10—C91.0 (3)
I1—C1—C2—C3−179.64 (11)C3—C4—C10—C9−179.53 (16)
C1—C2—C3—C4−0.09 (18)C5—C4—C10—C1−179.21 (16)
C1—C2—C3—C11177.91 (16)C3—C4—C10—C10.28 (17)
C2—C3—C4—C5179.39 (15)C18—C13—C14—C15−0.8 (3)
C11—C3—C4—C51.3 (3)C12—C13—C14—C15−179.58 (16)
C2—C3—C4—C10−0.12 (17)C13—C14—C15—C16−0.6 (3)
C11—C3—C4—C10−178.19 (15)C14—C15—C16—C171.8 (3)
C3—C4—C5—C6179.33 (17)C14—C15—C16—S2−178.67 (14)
C10—C4—C5—C6−1.3 (3)C19—S2—C16—C17−89.74 (15)
C4—C5—C6—C7−0.8 (3)C19—S2—C16—C1590.77 (15)
C5—C6—C7—C82.6 (3)C15—C16—C17—C18−1.6 (3)
C6—C7—C8—C9−1.7 (3)S2—C16—C17—C18178.85 (14)
C7—C8—C9—C10−0.4 (3)C16—C17—C18—C130.2 (3)
C8—C9—C10—C1−179.23 (18)C14—C13—C18—C171.0 (3)
C8—C9—C10—C40.5 (3)C12—C13—C18—C17179.80 (16)
C2—C1—C10—C9179.47 (16)C16—S2—C19—C2060.73 (15)
I1—C1—C10—C9−0.6 (2)C16—S2—C19—C22179.40 (14)
C2—C1—C10—C4−0.35 (18)C16—S2—C19—C21−62.02 (16)
I1—C1—C10—C4179.57 (11)
D—H···AD—HH···AD···AD—H···A
C17—H17···Cg1i0.952.953.471 (2)116
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C4/C10 ring.

DHA DHHA D A DHA
C17H17Cg1i 0.952.953.471(2)116

Symmetry code: (i) .

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