Literature DB >> 26396765

Crystal structures of 4-phenyl-piperazin-1-ium 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide and 4-phenyl-piperazin-1-ium 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide.

Monirah A Al-Alshaikh1, Ali A El-Emam2, Omar A Al-Deeb2, Mohammed S M Abdelbaky3, Santiago Garcia-Granda3.   

Abstract

The title mol-ecular salts, C10H15N2 (+)·C6H6ClN2O2 (-), (I), and C10H15N2 (+)·C7H8ClN2O2 (-), (II), consist of 4-phenyl-piperazin-1-ium cations with a 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide anion in (I) and a 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide anion in (II). Salt (I) crystallizes with two independent cations and anions in the asymmetric unit. In the crystal structures of both salts, the ions are linked via N-H⋯O and N-H⋯N hydrogen bonds, forming sheets which are parallel to (100) in (I) and to (001) in (II). In (I), the sheets are linked via C-H⋯Cl hydrogen bonds, forming a three-dimensional framework.

Entities:  

Keywords:  anti­cancer activity; crystal structure; hydrogen bonding; piperazinium salts

Year:  2015        PMID: 26396765      PMCID: PMC4571366          DOI: 10.1107/S2056989015013298

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

2,4-Dioxo­pyrimidine derivatives (uracils) and their related analogues are known for their diverse chemotherapeutic activities including anti­cancer activity (Ghoshal & Jacob, 1997 ▸; Spáčilová et al., 2007 ▸; Blokhina et al., 1972 ▸), anti-HIV activity (Tanaka et al., 1995 ▸; El-Emam et al., 2004 ▸) and anti­bacterial activity (Al-Turkistani et al., 2011 ▸). In addition, the piperazine nucleus constitutes the core pharmacophore of several biologically active compounds which display anti­viral (Romero et al., 1994 ▸, 1996 ▸), anti­cancer (Fytas et al., 2015 ▸; Kamal et al., 2015 ▸; Arnatt et al., 2014 ▸), anti­tubercular and anti­bacterial (Nagesh et al., 2014 ▸; Peng et al., 2015 ▸; Kapić et al., 2011 ▸; Wang et al., 2014 ▸) and central nervous system activities (Bender et al., 2014 ▸; Bali et al., 2010 ▸). As a result of the relative acidity of 2,4-dioxo­pyrimidines (Kurinovich & Lee, 2002 ▸; Jang et al., 2001 ▸; Nguyen et al., 1998 ▸), the title piperazinium salts were isolated as minor byproducts during the reaction of 1-phenyl­piperazine with 5-alkyl-6-chloro­uracils (Al-Turkistani et al., 2011 ▸). In a continuation of our inter­est in the structures of piperazinium salts (Al-Omary et al., 2014 ▸), we report herein on the isolation and crystal structures of these two new piperazinium salts, (I) and (II).

Structural commentary

The mol­ecular structures of the title salts (I) and (II) are illustrated in Figs. 1 ▸ and 2 ▸, respectively. Compound (I) crystallizes with two independent 4-phenyl­piperazin-1-ium cations (A and B) and two independent 6-chloro-5-ethyl-2, 4-dioxopyrimidin-1-ide anions (C and D) in the asymmetric unit. In both compounds, the piperazine rings adopt a distorted chair conformation with a positively charged protonated N atom. In compound (I), the mean plane of the piperazine ring makes a dihedral angle of 34.8 (2)° with the attached phenyl ring in cation A, and 39.7 (2)° in cation B. The equivalent dihedral angle is 39.61 (9)° in the cation of compound (II). In the uracil anions, the pyrimidine rings are almost planar with r.m.s. deviations of 0.008 Å in both anions (C and D) of compound (I), and 0.024 Å in compound (II).
Figure 1

The mol­ecular structure of compound (I), showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Figure 2

The mol­ecular structure of compound (II), showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal of (I), two tetra­nuclear units are formed, involving cation A and anion C, and cation B and anion D, via N—H⋯O and C—H⋯O hydrogen bonds. These units are linked via N—H⋯N hydrogen bonds, forming separate A/B and C/D sheets parallel to the bc plane (Table 1 ▸ and Fig. 3 ▸). The sheets are linked via C—H⋯Cl hydrogen bonds, forming a three-dimensional framework (Fig. 3 ▸ and Table 1 ▸).
Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.862.002.859 (4)173
N3—H3A⋯O1ii 0.892.833.465 (4)129
N6—H6A⋯O4iii 0.891.812.681 (5)165
N7—H7⋯O3iv 0.862.022.873 (4)174
N3—H3A⋯N2ii 0.891.922.808 (4)174
N6—H6B⋯N8v 0.891.922.798 (5)169
C10—H10B⋯O2vi 0.972.463.355 (5)154
C26—H26A⋯O3vii 0.972.583.444 (5)147
C16—H16⋯Cl2viii 0.932.803.462 (4)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

Figure 3

The crystal packing of compound (I), viewed along the b axis, showing the most relevant hydrogen bonding (dashed lines; see Table 1 ▸).

In the crystal of (II), the cation and anion are linked by N—H⋯O and C—H⋯O n class="Chemical">hydrogen bonds, forming chains extending along the b-axis direction. The chains are linked via N—H⋯N hydrogen bonds, forming sheets lying parallel to the ac plane (Table 2 ▸ and Fig. 4 ▸).
Table 2

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2N⋯N40.891.932.813 (2)174
N2—H3N⋯O1i 0.891.842.705 (2)164
N3—H3⋯O2ii 0.861.982.834 (2)174
C3—H3A⋯O2iii 0.972.543.394 (2)147

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 4

The crystal packing of compound (II), viewed along the b axis, showing the most relevant hydrogen bonding (dashed lines; see Table 2 ▸).

Database survey

A search of the Cambridge Structural Database (Version 5.36, last update November 2014; Groom & Allen, 2014 ▸) for the anion 6-chloro-5-ethyl-2,4-dioxopyrimidin-1-ide, present in compound (I), gave no hits, while for the anion 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide, present in compound (II), one hit was obtained, with the cation 4-(2-meth­oxy­phen­yl)piperazin-1-ium (Al-Omary et al., 2014 ▸).

Synthesis and crystallization

Compound (I): A mixture of 6-chloro-5-ethyl­uracil (349 mg, 2.0 mmol), 1-phenyl­piperazine (325 mg, 2.0 mmol) and anhydrous potassium carbonate (276 mg, 2.0 mmol), in ethanol (8 ml), was heated under reflux for 6 h. On cooling, the precipitate, thus formed was separated by filtration to yield 306 mg (51%) of 5-ethyl-6-(4-phenyl-1-piperazin­yl)uracil. The filtrate was concentrated by vacuum distillation to 5 ml and allowed to stand at room temperature overnight to yield compound (I) as colourless crystals (m.p.: 459–461 K). 1H NMR (DMSO-d6, 500.13 MHz): δ 0.93 (t, 3H, CH3, J = 7.0 Hz), 2.35 (q, 2H, CH2), 3.25 (s, 4H, piperazine-H), 3.45 (s, 4H, piperazine-H), 6.83–6.95 (m, 3H, Ar—H), 7.21 (d, 2H, Ar—H, J = 6.6 Hz), 8.15–8.17 (m, 2H, NH2), 10.83 (s, 1H, NH). 13C NMR (DMSO-d6, 125.76 MHz): δ 13.80 (CH3), 19.55 (CH2), 44.18, 47.86 (piperazine-C), 116.32, 119.62, 128.44, 150.70 (Ar—C), 108.88, 153.90, 155.94, 164.80 (pyrimidine-C), Compound (II): 6-Chloro-5-iso­propyl­uracil (377 mg, 2.0 mmol), 1-phenyl­piperazine (325 mg, 2.0 mmol) and anhydrous potassium carbonate (276 mg, 2.0 mmol), in ethanol (8 ml), was heated under reflux for 6 h. On cooling, the precipitate thus formed was separated by filtration to yield 566 mg (90%) of 5-isopropyl-6-(4-phenyl-1-piperazin­yl)uracil. The filtrate was concentrated by vacuum distillation to 5 ml and allowed to stand at room temperature overnight to yield compound (II) as colourless crystals (m.p.: 473–475 K). 1H NMR (DMSO-d 6, 500.13 MHz): δ 1.20 (d, 6H, CH3, J = 7.8 Hz), 2.52–2.56 (m, 1H, CH), 3.18 (s, 4H, piperazine-H), 3.24 (s, 4H, piperazine-H), 6.88–7.02 (m, 3H, Ar—H), 7.20–7.22 (m, 2H, Ar—H), 8.04–8.08 (m, 2H, NH2), 11.02 (s, 1H, NH). 13C NMR (DMSO-d 6, 125.76 MHz): δ 19.98 (CH3), 27.0 (CH), 44.50, 47.98 (piperazine-C), 116.16, 119.80, 129.04, 150.0 (Ar—C), 110.82, 152.30, 154.04, 164.06 (pyrimidine-C).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The H atoms were included in calculated positions and treated as riding atoms: N—H = 0.86–0.90 Å, C—H = 0.95–1.00 Å with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(N,C) for other H atoms.
Table 3

Experimental details

 (I)(II)
Crystal data
Chemical formulaC10H15N2 +·C6H6ClN2O2 C10H15N2 +·C7H8ClN2O2
M r 336.82350.84
Crystal system, space groupMonoclinic, P21/c Monoclinic, I2/a
Temperature (K)293101
a, b, c (Å)21.676 (1), 7.6446 (5), 20.5444 (8)20.5012 (3), 7.4565 (1), 23.1414 (3)
β (°)95.065 (5)90.639 (1)
V3)3391.0 (3)3537.34 (8)
Z 88
Radiation typeCu KαCu Kα
μ (mm−1)2.122.05
Crystal size (mm)0.17 × 0.08 × 0.060.34 × 0.13 × 0.09
 
Data collection
DiffractometerAgilent Xcalibur Ruby GeminiAgilent Xcalibur Ruby Gemini
Absorption correctionMulti-scan (CrysAlis PRO; Agilent, 2014)Multi-scan (CrysAlis PRO; Agilent, 2014)
T min, T max 0.809, 0.8800.760, 0.828
No. of measured, independent and observed [I > 2σ(I)] reflections32461, 6532, 359613174, 3396, 2926
R int 0.1350.069
(sin θ/λ)max−1)0.6120.612
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.066, 0.185, 1.010.044, 0.122, 1.03
No. of reflections64573346
No. of parameters415217
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.42, −0.360.55, −0.56

Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SIR2011 (Burla et al., 2012 ▸), Mercury (Macrae et al., 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, II, Global. DOI: 10.1107/S2056989015013298/su5162sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013298/su5162Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989015013298/su5162IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013298/su5162Isup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013298/su5162IIsup5.cml CCDC references: 1412124, 1412123 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H15N2+·C6H6ClN2O2F(000) = 1424
Mr = 336.82Dx = 1.319 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 21.676 (1) ÅCell parameters from 2418 reflections
b = 7.6446 (5) Åθ = 4.1–70.3°
c = 20.5444 (8) ŵ = 2.12 mm1
β = 95.065 (5)°T = 293 K
V = 3391.0 (3) Å3Prism, colourless
Z = 80.17 × 0.08 × 0.06 mm
Agilent Xcalibur Ruby Gemini diffractometer6532 independent reflections
Radiation source: Enhance (Cu) X-ray Source3596 reflections with I > 2σ(I)
Detector resolution: 10.2673 pixels mm-1Rint = 0.135
ω scansθmax = 70.7°, θmin = 4.1°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)h = −26→26
Tmin = 0.809, Tmax = 0.880k = −9→9
32461 measured reflectionsl = −21→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0563P)2] where P = (Fo2 + 2Fc2)/3
6457 reflections(Δ/σ)max = 0.001
415 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl21.13235 (5)0.04012 (14)0.82294 (5)0.0408 (3)
Cl10.65035 (5)−0.09582 (15)0.82219 (5)0.0437 (3)
O10.51594 (14)−0.6011 (4)0.82514 (13)0.0381 (7)
O20.55114 (13)−0.3192 (4)1.02030 (13)0.0344 (7)
O31.04166 (14)0.2995 (4)1.02077 (13)0.0378 (7)
N10.53525 (15)−0.4583 (4)0.92238 (15)0.0288 (8)
H10.5119−0.53220.94010.035*
O41.02351 (14)0.5927 (4)0.82725 (14)0.0415 (8)
N71.03409 (15)0.4421 (4)0.92325 (15)0.0306 (8)
H71.01400.52360.94100.037*
N20.57984 (15)−0.3662 (4)0.82841 (15)0.0301 (8)
N81.07502 (16)0.3338 (5)0.82954 (16)0.0330 (8)
N30.56236 (15)0.6236 (4)0.69138 (16)0.0320 (8)
H3A0.56950.61940.73470.038*
H3B0.53380.70530.68170.038*
N40.64335 (15)0.3661 (5)0.64533 (16)0.0330 (8)
N50.86014 (15)0.0992 (4)0.85634 (16)0.0325 (8)
N60.93121 (15)−0.1748 (4)0.80703 (16)0.0337 (8)
H6A0.9565−0.26550.81530.040*
H6B0.9245−0.16370.76390.040*
C10.54296 (19)−0.4798 (5)0.85679 (19)0.0313 (9)
C181.05419 (19)0.3021 (5)0.9626 (2)0.0328 (10)
C171.04364 (19)0.4618 (6)0.85811 (19)0.0313 (9)
C40.60638 (18)−0.2374 (5)0.8663 (2)0.0315 (9)
C20.56213 (18)−0.3272 (5)0.9617 (2)0.0308 (9)
C201.09503 (18)0.1988 (5)0.8674 (2)0.0309 (9)
C110.68606 (18)0.2301 (5)0.6354 (2)0.0311 (9)
C90.6682 (2)0.5311 (5)0.6731 (2)0.0345 (10)
H9A0.70510.56340.65240.041*
H9B0.67960.51660.71950.041*
C270.82314 (18)0.2433 (5)0.8709 (2)0.0315 (9)
C30.60166 (18)−0.2074 (5)0.93082 (19)0.0301 (9)
C250.82936 (19)−0.0520 (5)0.8253 (2)0.0341 (10)
H25A0.8201−0.02960.77890.041*
H25B0.7907−0.07360.84430.041*
C191.08842 (19)0.1695 (5)0.93181 (19)0.0316 (9)
C230.96153 (19)−0.0141 (6)0.8346 (2)0.0357 (10)
H23A0.99820.01040.81230.043*
H23B0.9742−0.03170.88060.043*
C211.1136 (2)0.0116 (6)0.9694 (2)0.0377 (10)
H21A1.1044−0.09240.94330.045*
H21B1.09280.00071.00910.045*
C280.7616 (2)0.2637 (6)0.8454 (2)0.0397 (11)
H280.74480.18570.81390.048*
C100.62039 (19)0.6734 (5)0.6625 (2)0.0336 (10)
H10A0.63650.78090.68250.040*
H10B0.61160.69410.61610.040*
C50.6318 (2)−0.0569 (5)0.9687 (2)0.0359 (10)
H5A0.6721−0.03530.95330.043*
H5B0.6381−0.08931.01450.043*
C70.53832 (19)0.4524 (6)0.6672 (2)0.0378 (10)
H7A0.52480.46100.62110.045*
H7B0.50290.41960.69030.045*
C160.74788 (19)0.2396 (6)0.6587 (2)0.0357 (10)
H160.76180.33340.68490.043*
C150.7893 (2)0.1105 (6)0.6436 (2)0.0412 (11)
H150.83080.11920.65920.049*
C260.87103 (19)−0.2105 (6)0.8348 (2)0.0371 (10)
H26A0.8784−0.23680.88110.044*
H26B0.8511−0.31100.81320.044*
C120.6660 (2)0.0859 (6)0.5972 (2)0.0369 (10)
H120.62460.07650.58120.044*
C80.58805 (18)0.3138 (5)0.6776 (2)0.0344 (10)
H8A0.59910.29790.72400.041*
H8B0.57240.20330.65970.041*
C320.8473 (2)0.3663 (5)0.9167 (2)0.0374 (10)
H320.88840.35730.93370.045*
C240.91766 (19)0.1391 (6)0.8266 (2)0.0362 (10)
H24A0.93700.24170.84730.043*
H24B0.90830.16450.78050.043*
C290.7254 (2)0.3984 (7)0.8662 (2)0.0480 (12)
H290.68430.40890.84930.058*
C310.8113 (2)0.4999 (6)0.9369 (2)0.0442 (12)
H310.82820.57960.96770.053*
C130.7077 (2)−0.0424 (6)0.5832 (2)0.0423 (11)
H130.6938−0.13840.55820.051*
C221.1830 (2)0.0208 (6)0.9874 (2)0.0433 (11)
H22A1.1963−0.08261.01110.065*
H22B1.20400.02880.94830.065*
H22C1.19240.12191.01410.065*
C140.7692 (2)−0.0311 (6)0.6054 (2)0.0450 (12)
H140.7970−0.11730.59480.054*
C300.7503 (2)0.5173 (6)0.9120 (2)0.0487 (13)
H300.72610.60820.92590.058*
C60.5943 (2)0.1094 (6)0.9627 (2)0.0529 (13)
H6C0.61580.20020.98780.079*
H6D0.58870.14400.91770.079*
H6E0.55460.08990.97880.079*
U11U22U33U12U13U23
Cl20.0470 (6)0.0405 (6)0.0359 (6)0.0097 (5)0.0099 (5)−0.0029 (5)
Cl10.0503 (7)0.0474 (7)0.0347 (6)−0.0174 (5)0.0101 (5)0.0010 (5)
O10.0488 (18)0.0360 (17)0.0301 (16)−0.0110 (14)0.0063 (14)−0.0051 (13)
O20.0396 (17)0.0410 (17)0.0226 (15)−0.0075 (13)0.0030 (13)0.0008 (12)
O30.0446 (18)0.0400 (18)0.0299 (16)0.0085 (14)0.0087 (14)0.0022 (13)
N10.0337 (18)0.0299 (18)0.0231 (17)−0.0075 (15)0.0036 (14)0.0018 (14)
O40.0462 (19)0.0444 (19)0.0349 (17)0.0130 (15)0.0087 (14)0.0079 (14)
N70.0323 (18)0.033 (2)0.0266 (18)0.0058 (15)0.0057 (15)−0.0034 (15)
N20.0301 (18)0.036 (2)0.0244 (17)−0.0008 (15)0.0033 (14)0.0004 (15)
N80.0331 (19)0.036 (2)0.0305 (19)0.0011 (16)0.0053 (15)−0.0007 (16)
N30.0349 (19)0.0336 (19)0.0280 (18)0.0064 (15)0.0052 (15)−0.0001 (15)
N40.0304 (19)0.033 (2)0.0355 (19)−0.0054 (15)0.0046 (15)−0.0023 (16)
N50.0297 (18)0.0307 (19)0.038 (2)0.0003 (15)0.0089 (16)−0.0023 (16)
N60.038 (2)0.035 (2)0.0287 (19)0.0004 (16)0.0042 (16)−0.0002 (15)
C10.032 (2)0.033 (2)0.028 (2)−0.0028 (18)0.0043 (18)0.0009 (18)
C180.035 (2)0.032 (2)0.032 (2)−0.0007 (18)0.0079 (19)0.0012 (18)
C170.032 (2)0.035 (2)0.028 (2)0.0040 (18)0.0048 (18)0.0007 (18)
C40.027 (2)0.035 (2)0.033 (2)−0.0055 (17)0.0018 (18)0.0043 (18)
C20.029 (2)0.031 (2)0.032 (2)0.0002 (17)0.0011 (18)0.0027 (18)
C200.028 (2)0.033 (2)0.032 (2)0.0001 (18)0.0054 (18)−0.0055 (18)
C110.029 (2)0.033 (2)0.032 (2)0.0018 (18)0.0075 (18)0.0018 (18)
C90.039 (2)0.029 (2)0.036 (2)−0.0052 (19)0.009 (2)−0.0006 (19)
C270.031 (2)0.033 (2)0.031 (2)−0.0006 (18)0.0070 (18)0.0058 (18)
C30.031 (2)0.033 (2)0.026 (2)−0.0006 (17)−0.0008 (17)0.0012 (17)
C250.032 (2)0.038 (2)0.032 (2)−0.0057 (19)0.0044 (18)0.0012 (19)
C190.034 (2)0.032 (2)0.029 (2)0.0009 (18)0.0051 (18)0.0000 (18)
C230.031 (2)0.039 (3)0.038 (2)−0.0023 (19)0.0063 (19)−0.006 (2)
C210.042 (3)0.038 (2)0.035 (2)0.006 (2)0.010 (2)0.004 (2)
C280.039 (2)0.044 (3)0.037 (3)0.004 (2)0.006 (2)−0.001 (2)
C100.041 (2)0.033 (2)0.027 (2)0.0013 (19)0.0050 (19)0.0011 (18)
C50.041 (2)0.039 (3)0.028 (2)−0.009 (2)0.0027 (19)0.0014 (19)
C70.031 (2)0.044 (3)0.038 (2)0.004 (2)0.0009 (19)−0.003 (2)
C160.034 (2)0.038 (2)0.036 (2)0.0002 (19)0.0054 (19)−0.0014 (19)
C150.036 (2)0.045 (3)0.043 (3)0.006 (2)0.008 (2)0.004 (2)
C260.038 (2)0.039 (3)0.034 (2)−0.006 (2)0.007 (2)−0.0022 (19)
C120.040 (2)0.037 (2)0.034 (2)0.000 (2)0.0024 (19)0.0026 (19)
C80.035 (2)0.031 (2)0.038 (2)−0.0043 (19)0.0045 (19)−0.0033 (19)
C320.039 (2)0.033 (2)0.041 (3)−0.0047 (19)0.011 (2)−0.002 (2)
C240.032 (2)0.041 (3)0.037 (2)−0.0063 (19)0.0111 (19)−0.002 (2)
C290.044 (3)0.055 (3)0.045 (3)0.015 (2)0.006 (2)0.005 (2)
C310.055 (3)0.037 (3)0.043 (3)−0.001 (2)0.017 (2)−0.003 (2)
C130.058 (3)0.034 (2)0.037 (3)−0.004 (2)0.014 (2)−0.006 (2)
C220.042 (3)0.046 (3)0.043 (3)0.005 (2)0.007 (2)0.009 (2)
C140.053 (3)0.037 (3)0.047 (3)0.010 (2)0.017 (2)0.002 (2)
C300.056 (3)0.045 (3)0.047 (3)0.017 (2)0.019 (3)0.005 (2)
C60.065 (3)0.040 (3)0.051 (3)0.002 (2)−0.008 (3)−0.010 (2)
Cl2—C201.758 (4)C19—C211.509 (6)
Cl1—C41.747 (4)C23—C241.508 (6)
O1—C11.249 (5)C23—H23A0.9700
O2—C21.248 (5)C23—H23B0.9700
O3—C181.249 (5)C21—C221.517 (6)
N1—C11.382 (5)C21—H21A0.9700
N1—C21.384 (5)C21—H21B0.9700
N1—H10.8600C28—C291.386 (6)
O4—C171.243 (5)C28—H280.9300
N7—C171.380 (5)C10—H10A0.9700
N7—C181.388 (5)C10—H10B0.9700
N7—H70.8600C5—C61.508 (6)
N2—C11.347 (5)C5—H5A0.9700
N2—C41.351 (5)C5—H5B0.9700
N8—C201.342 (5)C7—C81.513 (6)
N8—C171.354 (5)C7—H7A0.9700
N3—C71.478 (5)C7—H7B0.9700
N3—C101.487 (5)C16—C151.388 (6)
N3—H3A0.8900C16—H160.9300
N3—H3B0.8900C15—C141.385 (7)
N4—C111.419 (5)C15—H150.9300
N4—C91.467 (5)C26—H26A0.9700
N4—C81.475 (5)C26—H26B0.9700
N5—C271.410 (5)C12—C131.380 (6)
N5—C251.454 (5)C12—H120.9300
N5—C241.468 (5)C8—H8A0.9700
N6—C231.482 (5)C8—H8B0.9700
N6—C261.495 (5)C32—C311.371 (6)
N6—H6A0.8900C32—H320.9300
N6—H6B0.8900C24—H24A0.9700
C18—C191.436 (6)C24—H24B0.9700
C4—C31.359 (6)C29—C301.383 (7)
C2—C31.440 (6)C29—H290.9300
C20—C191.362 (6)C31—C301.383 (7)
C11—C161.385 (6)C31—H310.9300
C11—C121.400 (6)C13—C141.374 (7)
C9—C101.505 (6)C13—H130.9300
C9—H9A0.9700C22—H22A0.9600
C9—H9B0.9700C22—H22B0.9600
C27—C281.398 (6)C22—H22C0.9600
C27—C321.399 (6)C14—H140.9300
C3—C51.505 (6)C30—H300.9300
C25—C261.514 (6)C6—H6C0.9600
C25—H25A0.9700C6—H6D0.9600
C25—H25B0.9700C6—H6E0.9600
C1—N1—C2125.1 (3)H21A—C21—H21B107.8
C1—N1—H1117.5C29—C28—C27121.0 (5)
C2—N1—H1117.5C29—C28—H28119.5
C17—N7—C18125.6 (3)C27—C28—H28119.5
C17—N7—H7117.2N3—C10—C9110.7 (3)
C18—N7—H7117.2N3—C10—H10A109.5
C1—N2—C4117.3 (3)C9—C10—H10A109.5
C20—N8—C17117.0 (3)N3—C10—H10B109.5
C7—N3—C10112.2 (3)C9—C10—H10B109.5
C7—N3—H3A109.2H10A—C10—H10B108.1
C10—N3—H3A109.2C3—C5—C6113.3 (4)
C7—N3—H3B109.2C3—C5—H5A108.9
C10—N3—H3B109.2C6—C5—H5A108.9
H3A—N3—H3B107.9C3—C5—H5B108.9
C11—N4—C9117.6 (3)C6—C5—H5B108.9
C11—N4—C8115.6 (3)H5A—C5—H5B107.7
C9—N4—C8110.1 (3)N3—C7—C8110.3 (3)
C27—N5—C25117.8 (3)N3—C7—H7A109.6
C27—N5—C24116.5 (3)C8—C7—H7A109.6
C25—N5—C24110.9 (3)N3—C7—H7B109.6
C23—N6—C26112.2 (3)C8—C7—H7B109.6
C23—N6—H6A109.2H7A—C7—H7B108.1
C26—N6—H6A109.2C11—C16—C15120.8 (4)
C23—N6—H6B109.2C11—C16—H16119.6
C26—N6—H6B109.2C15—C16—H16119.6
H6A—N6—H6B107.9C14—C15—C16120.3 (4)
O1—C1—N2121.5 (4)C14—C15—H15119.8
O1—C1—N1120.3 (4)C16—C15—H15119.8
N2—C1—N1118.2 (4)N6—C26—C25109.6 (3)
O3—C18—N7119.1 (4)N6—C26—H26A109.8
O3—C18—C19125.1 (4)C25—C26—H26A109.8
N7—C18—C19115.8 (3)N6—C26—H26B109.8
O4—C17—N8121.8 (4)C25—C26—H26B109.8
O4—C17—N7120.4 (4)H26A—C26—H26B108.2
N8—C17—N7117.8 (4)C13—C12—C11120.0 (4)
N2—C4—C3128.3 (4)C13—C12—H12120.0
N2—C4—Cl1112.1 (3)C11—C12—H12120.0
C3—C4—Cl1119.5 (3)N4—C8—C7110.1 (3)
O2—C2—N1119.5 (4)N4—C8—H8A109.6
O2—C2—C3124.5 (4)C7—C8—H8A109.6
N1—C2—C3116.1 (3)N4—C8—H8B109.6
N8—C20—C19129.3 (4)C7—C8—H8B109.6
N8—C20—Cl2111.7 (3)H8A—C8—H8B108.2
C19—C20—Cl2119.0 (3)C31—C32—C27121.1 (4)
C16—C11—C12118.5 (4)C31—C32—H32119.5
C16—C11—N4122.4 (4)C27—C32—H32119.5
C12—C11—N4118.9 (4)N5—C24—C23110.1 (3)
N4—C9—C10109.9 (4)N5—C24—H24A109.6
N4—C9—H9A109.7C23—C24—H24A109.6
C10—C9—H9A109.7N5—C24—H24B109.6
N4—C9—H9B109.7C23—C24—H24B109.6
C10—C9—H9B109.7H24A—C24—H24B108.1
H9A—C9—H9B108.2C30—C29—C28120.1 (5)
C28—C27—C32117.7 (4)C30—C29—H29120.0
C28—C27—N5123.4 (4)C28—C29—H29120.0
C32—C27—N5118.8 (4)C32—C31—C30120.7 (5)
C4—C3—C2115.0 (4)C32—C31—H31119.6
C4—C3—C5124.6 (4)C30—C31—H31119.6
C2—C3—C5120.4 (3)C14—C13—C12121.3 (4)
N5—C25—C26109.5 (4)C14—C13—H13119.3
N5—C25—H25A109.8C12—C13—H13119.3
C26—C25—H25A109.8C21—C22—H22A109.5
N5—C25—H25B109.8C21—C22—H22B109.5
C26—C25—H25B109.8H22A—C22—H22B109.5
H25A—C25—H25B108.2C21—C22—H22C109.5
C20—C19—C18114.5 (4)H22A—C22—H22C109.5
C20—C19—C21124.4 (4)H22B—C22—H22C109.5
C18—C19—C21121.1 (4)C13—C14—C15119.0 (4)
N6—C23—C24110.4 (4)C13—C14—H14120.5
N6—C23—H23A109.6C15—C14—H14120.5
C24—C23—H23A109.6C29—C30—C31119.4 (4)
N6—C23—H23B109.6C29—C30—H30120.3
C24—C23—H23B109.6C31—C30—H30120.3
H23A—C23—H23B108.1C5—C6—H6C109.5
C19—C21—C22113.2 (4)C5—C6—H6D109.5
C19—C21—H21A108.9H6C—C6—H6D109.5
C22—C21—H21A108.9C5—C6—H6E109.5
C19—C21—H21B108.9H6C—C6—H6E109.5
C22—C21—H21B108.9H6D—C6—H6E109.5
C4—N2—C1—O1179.0 (4)N8—C20—C19—C21−179.6 (4)
C4—N2—C1—N1−0.6 (6)Cl2—C20—C19—C212.8 (6)
C2—N1—C1—O1−178.9 (4)O3—C18—C19—C20178.5 (4)
C2—N1—C1—N20.7 (6)N7—C18—C19—C20−1.4 (6)
C17—N7—C18—O3−179.1 (4)O3—C18—C19—C21−0.9 (7)
C17—N7—C18—C190.9 (6)N7—C18—C19—C21179.2 (4)
C20—N8—C17—O4179.6 (4)C26—N6—C23—C24−53.9 (5)
C20—N8—C17—N7−0.8 (6)C20—C19—C21—C2276.2 (6)
C18—N7—C17—O4179.9 (4)C18—C19—C21—C22−104.4 (5)
C18—N7—C17—N80.3 (6)C32—C27—C28—C29−1.8 (6)
C1—N2—C4—C31.1 (7)N5—C27—C28—C29173.5 (4)
C1—N2—C4—Cl1−177.7 (3)C7—N3—C10—C9−54.1 (4)
C1—N1—C2—O2179.0 (4)N4—C9—C10—N356.9 (4)
C1—N1—C2—C3−1.0 (6)C4—C3—C5—C684.3 (5)
C17—N8—C20—C190.1 (7)C2—C3—C5—C6−92.5 (5)
C17—N8—C20—Cl2177.9 (3)C10—N3—C7—C853.7 (4)
C9—N4—C11—C168.8 (6)C12—C11—C16—C151.2 (6)
C8—N4—C11—C16−124.1 (4)N4—C11—C16—C15−174.7 (4)
C9—N4—C11—C12−167.1 (4)C11—C16—C15—C14−0.7 (7)
C8—N4—C11—C1260.0 (5)C23—N6—C26—C2554.9 (5)
C11—N4—C9—C10164.1 (3)N5—C25—C26—N6−58.0 (4)
C8—N4—C9—C10−60.6 (4)C16—C11—C12—C13−0.4 (6)
C25—N5—C27—C28−13.7 (6)N4—C11—C12—C13175.6 (4)
C24—N5—C27—C28121.7 (4)C11—N4—C8—C7−163.1 (4)
C25—N5—C27—C32161.5 (4)C9—N4—C8—C760.6 (4)
C24—N5—C27—C32−63.1 (5)N3—C7—C8—N4−56.5 (4)
N2—C4—C3—C2−1.4 (7)C28—C27—C32—C311.5 (6)
Cl1—C4—C3—C2177.3 (3)N5—C27—C32—C31−174.0 (4)
N2—C4—C3—C5−178.3 (4)C27—N5—C24—C23161.1 (4)
Cl1—C4—C3—C50.4 (6)C25—N5—C24—C23−60.5 (5)
O2—C2—C3—C4−178.8 (4)N6—C23—C24—N555.5 (4)
N1—C2—C3—C41.2 (6)C27—C28—C29—C301.2 (7)
O2—C2—C3—C5−1.7 (6)C27—C32—C31—C30−0.6 (7)
N1—C2—C3—C5178.3 (4)C11—C12—C13—C14−0.8 (7)
C27—N5—C25—C26−160.5 (3)C12—C13—C14—C151.3 (7)
C24—N5—C25—C2661.7 (4)C16—C15—C14—C13−0.5 (7)
N8—C20—C19—C181.1 (7)C28—C29—C30—C31−0.3 (7)
Cl2—C20—C19—C18−176.5 (3)C32—C31—C30—C290.0 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.002.859 (4)173
N3—H3A···O1ii0.892.833.465 (4)129
N6—H6A···O4iii0.891.812.681 (5)165
N7—H7···O3iv0.862.022.873 (4)174
N3—H3A···N2ii0.891.922.808 (4)174
N6—H6B···N8v0.891.922.798 (5)169
C10—H10B···O2vi0.972.463.355 (5)154
C26—H26A···O3vii0.972.583.444 (5)147
C16—H16···Cl2viii0.932.803.462 (4)129
C10H15N2+·C7H8ClN2O2F(000) = 1488
Mr = 350.84Dx = 1.318 Mg m3
Monoclinic, I2/aCu Kα radiation, λ = 1.5418 Å
a = 20.5012 (3) ÅCell parameters from 6927 reflections
b = 7.4565 (1) Åθ = 3.8–70.0°
c = 23.1414 (3) ŵ = 2.05 mm1
β = 90.639 (1)°T = 101 K
V = 3537.34 (8) Å3Prism, colourless
Z = 80.34 × 0.13 × 0.09 mm
Agilent Xcalibur Ruby Gemini diffractometer2926 reflections with I > 2σ(I)
Detector resolution: 10.2673 pixels mm-1Rint = 0.069
ω scansθmax = 70.6°, θmin = 3.8°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)h = −24→25
Tmin = 0.760, Tmax = 0.828k = −9→7
13174 measured reflectionsl = −27→28
3396 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0585P)2 + 3.6877P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3346 reflectionsΔρmax = 0.55 e Å3
217 parametersΔρmin = −0.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl10.43825 (2)0.80800 (7)0.38729 (2)0.03420 (17)
O10.42855 (6)1.32956 (18)0.26398 (6)0.0286 (3)
O20.23184 (6)1.07264 (19)0.29852 (6)0.0288 (3)
N30.33106 (7)1.1946 (2)0.28125 (6)0.0227 (3)
H30.31241.27110.25870.027*
N40.42771 (7)1.0889 (2)0.32365 (6)0.0228 (3)
N20.56397 (7)1.1049 (2)0.31180 (6)0.0246 (3)
H3N0.57341.02380.28490.029*
H2N0.52081.10870.31520.029*
C110.39765 (9)1.2092 (2)0.28906 (7)0.0228 (4)
N10.60877 (7)1.3622 (2)0.39443 (6)0.0230 (3)
C20.58171 (9)1.1911 (2)0.41332 (8)0.0237 (4)
H2A0.53521.20360.41950.028*
H2B0.60201.15560.44960.028*
C40.58796 (10)1.2834 (3)0.29310 (8)0.0271 (4)
H4A0.56491.32010.25820.032*
H4B0.63411.27600.28450.032*
C140.39071 (9)0.9583 (2)0.34646 (7)0.0236 (4)
C120.29194 (9)1.0666 (3)0.30679 (7)0.0232 (4)
C60.58544 (9)1.4868 (3)0.49109 (8)0.0273 (4)
H60.55811.39060.49920.033*
C130.32496 (9)0.9324 (2)0.34113 (7)0.0231 (4)
C30.59378 (9)1.0490 (3)0.36799 (8)0.0245 (4)
H3A0.64031.03180.36340.029*
H3B0.57500.93610.38020.029*
C100.65511 (9)1.6458 (3)0.42609 (8)0.0272 (4)
H100.67491.65710.39030.033*
C150.28407 (10)0.7802 (3)0.36508 (8)0.0286 (4)
H150.23930.80630.35230.034*
C50.61534 (9)1.4980 (2)0.43717 (8)0.0224 (4)
C80.63624 (10)1.7627 (3)0.52142 (9)0.0341 (5)
H80.64361.85000.54940.041*
C10.57729 (9)1.4207 (3)0.34016 (7)0.0249 (4)
H1A0.59531.53520.32840.030*
H1B0.53091.43650.34620.030*
C70.59623 (10)1.6182 (3)0.53262 (8)0.0332 (5)
H70.57631.60880.56840.040*
C90.66531 (10)1.7757 (3)0.46790 (9)0.0320 (5)
H90.69211.87310.45990.038*
C160.28114 (10)0.7739 (3)0.43025 (8)0.0310 (4)
H16A0.27080.89090.44480.047*
H16B0.24810.69020.44180.047*
H16C0.32270.73650.44560.047*
C170.30027 (12)0.6004 (3)0.33815 (9)0.0394 (5)
H17A0.30150.61250.29690.059*
H17B0.34210.56050.35220.059*
H17C0.26750.51430.34830.059*
U11U22U33U12U13U23
Cl10.0307 (3)0.0306 (3)0.0413 (3)0.00185 (19)0.0001 (2)0.0141 (2)
O10.0225 (7)0.0278 (7)0.0355 (7)−0.0043 (6)0.0020 (5)0.0107 (6)
O20.0210 (6)0.0341 (8)0.0313 (7)−0.0042 (6)0.0017 (5)0.0053 (6)
N30.0210 (7)0.0233 (8)0.0238 (7)−0.0013 (6)0.0012 (6)0.0032 (6)
N40.0233 (7)0.0211 (8)0.0239 (7)0.0003 (6)0.0022 (6)0.0025 (6)
N20.0227 (7)0.0256 (8)0.0255 (7)0.0009 (7)0.0023 (6)−0.0055 (6)
C110.0238 (9)0.0216 (9)0.0231 (8)−0.0010 (7)0.0033 (7)−0.0021 (7)
N10.0261 (8)0.0203 (8)0.0225 (7)0.0005 (6)0.0007 (6)0.0002 (6)
C20.0254 (9)0.0221 (9)0.0235 (8)0.0009 (7)0.0020 (7)0.0010 (7)
C40.0302 (10)0.0284 (10)0.0226 (9)−0.0025 (8)0.0023 (7)−0.0003 (8)
C140.0295 (9)0.0207 (9)0.0206 (8)0.0023 (8)0.0024 (7)−0.0001 (7)
C120.0255 (9)0.0244 (9)0.0198 (8)−0.0036 (8)0.0043 (7)−0.0030 (7)
C60.0300 (10)0.0248 (10)0.0273 (9)−0.0002 (8)0.0003 (8)−0.0004 (8)
C130.0287 (9)0.0209 (9)0.0198 (8)−0.0031 (8)0.0042 (7)−0.0022 (7)
C30.0231 (9)0.0221 (9)0.0284 (9)0.0017 (7)0.0017 (7)−0.0005 (7)
C100.0241 (9)0.0254 (10)0.0322 (10)0.0019 (8)0.0017 (7)−0.0005 (8)
C150.0317 (10)0.0262 (10)0.0279 (9)−0.0059 (8)0.0039 (8)0.0007 (8)
C50.0201 (8)0.0211 (9)0.0260 (9)0.0053 (7)−0.0028 (7)−0.0015 (7)
C80.0376 (11)0.0290 (11)0.0354 (10)0.0050 (9)−0.0084 (9)−0.0106 (9)
C10.0284 (9)0.0236 (9)0.0227 (8)0.0002 (8)0.0006 (7)0.0016 (7)
C70.0385 (11)0.0350 (11)0.0260 (9)0.0066 (9)0.0012 (8)−0.0053 (8)
C90.0273 (10)0.0241 (10)0.0445 (11)−0.0005 (8)−0.0056 (8)−0.0034 (9)
C160.0318 (10)0.0306 (11)0.0309 (10)−0.0049 (9)0.0092 (8)0.0003 (8)
C170.0492 (13)0.0299 (11)0.0396 (11)−0.0130 (10)0.0139 (10)−0.0048 (9)
Cl1—C141.7544 (18)C6—C71.389 (3)
O1—C111.246 (2)C6—C51.399 (3)
O2—C121.246 (2)C6—H60.9300
N3—C111.379 (2)C13—C151.519 (3)
N3—C121.383 (2)C3—H3A0.9700
N3—H30.8600C3—H3B0.9700
N4—N40.000 (5)C10—C91.383 (3)
N4—C141.346 (2)C10—C51.397 (3)
N4—C111.347 (2)C10—H100.9300
N2—C41.485 (2)C15—C161.511 (3)
N2—C31.490 (2)C15—C171.517 (3)
N2—H3N0.8900C15—H150.9800
N2—H2N0.8900C8—C71.380 (3)
C11—N41.347 (2)C8—C91.384 (3)
N1—C51.421 (2)C8—H80.9300
N1—C21.460 (2)C1—H1A0.9700
N1—C11.472 (2)C1—H1B0.9700
C2—C31.513 (2)C7—H70.9300
C2—H2A0.9700C9—H90.9300
C2—H2B0.9700C16—H16A0.9600
C4—C11.512 (3)C16—H16B0.9600
C4—H4A0.9700C16—H16C0.9600
C4—H4B0.9700C17—H17A0.9600
C14—N41.346 (2)C17—H17B0.9600
C14—C131.366 (3)C17—H17C0.9600
C12—C131.442 (3)
C11—N3—C12125.17 (16)C12—C13—C15117.51 (16)
C11—N3—H3117.4N2—C3—C2109.92 (15)
C12—N3—H3117.4N2—C3—H3A109.7
N4—N4—C140 (10)C2—C3—H3A109.7
N4—N4—C110 (10)N2—C3—H3B109.7
C14—N4—C11117.31 (15)C2—C3—H3B109.7
C4—N2—C3111.77 (14)H3A—C3—H3B108.2
C4—N2—H3N109.3C9—C10—C5120.54 (18)
C3—N2—H3N109.3C9—C10—H10119.7
C4—N2—H2N109.3C5—C10—H10119.7
C3—N2—H2N109.3C16—C15—C17113.20 (18)
H3N—N2—H2N107.9C16—C15—C13114.57 (16)
O1—C11—N4121.67 (16)C17—C15—C13112.72 (16)
O1—C11—N4121.67 (16)C16—C15—H15105.1
N4—C11—N40.00 (14)C17—C15—H15105.1
O1—C11—N3120.23 (17)C13—C15—H15105.1
N4—C11—N3118.10 (16)C10—C5—C6118.26 (17)
N4—C11—N3118.10 (16)C10—C5—N1119.06 (16)
C5—N1—C2116.59 (14)C6—C5—N1122.64 (17)
C5—N1—C1114.83 (15)C7—C8—C9119.04 (19)
C2—N1—C1110.50 (14)C7—C8—H8120.5
N1—C2—C3109.78 (14)C9—C8—H8120.5
N1—C2—H2A109.7N1—C1—C4110.37 (15)
C3—C2—H2A109.7N1—C1—H1A109.6
N1—C2—H2B109.7C4—C1—H1A109.6
C3—C2—H2B109.7N1—C1—H1B109.6
H2A—C2—H2B108.2C4—C1—H1B109.6
N2—C4—C1110.25 (15)H1A—C1—H1B108.1
N2—C4—H4A109.6C8—C7—C6120.75 (19)
C1—C4—H4A109.6C8—C7—H7119.6
N2—C4—H4B109.6C6—C7—H7119.6
C1—C4—H4B109.6C10—C9—C8120.9 (2)
H4A—C4—H4B108.1C10—C9—H9119.5
N4—C14—N40.00 (17)C8—C9—H9119.5
N4—C14—C13128.81 (17)C15—C16—H16A109.5
N4—C14—C13128.81 (17)C15—C16—H16B109.5
N4—C14—Cl1111.18 (13)H16A—C16—H16B109.5
N4—C14—Cl1111.18 (13)C15—C16—H16C109.5
C13—C14—Cl1120.01 (14)H16A—C16—H16C109.5
O2—C12—N3119.11 (17)H16B—C16—H16C109.5
O2—C12—C13124.56 (17)C15—C17—H17A109.5
N3—C12—C13116.32 (16)C15—C17—H17B109.5
C7—C6—C5120.48 (19)H17A—C17—H17B109.5
C7—C6—H6119.8C15—C17—H17C109.5
C5—C6—H6119.8H17A—C17—H17C109.5
C14—C13—C12114.11 (16)H17B—C17—H17C109.5
C14—C13—C15128.36 (17)
N4—N4—C11—O10.0 (5)N3—C12—C13—C144.0 (2)
C14—N4—C11—O1−176.64 (16)O2—C12—C13—C154.8 (3)
C14—N4—C11—N40 (100)N3—C12—C13—C15−174.41 (15)
N4—N4—C11—N30.0 (4)C4—N2—C3—C255.49 (19)
C14—N4—C11—N32.5 (2)N1—C2—C3—N2−58.11 (19)
C12—N3—C11—O1179.96 (16)C14—C13—C15—C1665.7 (3)
C12—N3—C11—N40.8 (3)C12—C13—C15—C16−116.20 (19)
C12—N3—C11—N40.8 (3)C14—C13—C15—C17−65.7 (3)
C5—N1—C2—C3−165.61 (15)C12—C13—C15—C17112.4 (2)
C1—N1—C2—C360.88 (19)C9—C10—C5—C61.1 (3)
C3—N2—C4—C1−54.5 (2)C9—C10—C5—N1−176.58 (17)
C11—N4—C14—N40 (100)C7—C6—C5—C10−1.1 (3)
N4—N4—C14—C130.0 (3)C7—C6—C5—N1176.42 (17)
C11—N4—C14—C13−2.5 (3)C2—N1—C5—C10164.11 (16)
N4—N4—C14—Cl10.0 (3)C1—N1—C5—C10−64.4 (2)
C11—N4—C14—Cl1177.09 (13)C2—N1—C5—C6−13.4 (2)
C11—N3—C12—O2176.56 (16)C1—N1—C5—C6118.11 (19)
C11—N3—C12—C13−4.2 (3)C5—N1—C1—C4165.63 (15)
N4—C14—C13—C12−0.9 (3)C2—N1—C1—C4−59.98 (19)
N4—C14—C13—C12−0.9 (3)N2—C4—C1—N156.0 (2)
Cl1—C14—C13—C12179.55 (12)C9—C8—C7—C60.4 (3)
N4—C14—C13—C15177.27 (17)C5—C6—C7—C80.4 (3)
N4—C14—C13—C15177.27 (17)C5—C10—C9—C8−0.3 (3)
Cl1—C14—C13—C15−2.3 (3)C7—C8—C9—C10−0.5 (3)
O2—C12—C13—C14−176.82 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2N···N40.891.932.813 (2)174
N2—H3N···O1i0.891.842.705 (2)164
N3—H3···O2ii0.861.982.834 (2)174
C3—H3A···O2iii0.972.543.394 (2)147
  19 in total

1.  Synthesis, molecular docking and biological evaluation of metronidazole derivatives containing piperazine skeleton as potential antibacterial agents.

Authors:  She-Feng Wang; Yong Yin; Fang Qiao; Xun Wu; Shao Sha; Li Zhang; Hai-Liang Zhu
Journal:  Bioorg Med Chem       Date:  2014-03-13       Impact factor: 3.641

2.  Synthesis, evaluation and computational studies on a series of acetophenone based 1-(aryloxypropyl)-4-(chloroaryl) piperazines as potential atypical antipsychotics.

Authors:  Alka Bali; Komal Sharma; Abhishek Bhalla; Suman Bala; Dinesh Reddy; Anant Singh; Anil Kumar
Journal:  Eur J Med Chem       Date:  2010-02-10       Impact factor: 6.514

3.  Results of treatment of malignant tumors with ftorafur.

Authors:  N G Blokhina; E K Vozny; A M Garin
Journal:  Cancer       Date:  1972-08       Impact factor: 6.860

4.  Synthesis of macrolones with central piperazine ring in the linker and its influence on antibacterial activity.

Authors:  Samra Kapić; Hana Cipčić Paljetak; Ivana Palej Jakopović; Andrea Fajdetić; Marina Ilijaš; Vlado Stimac; Karmen Brajša; David J Holmes; John Berge; Sulejman Alihodžić
Journal:  Bioorg Med Chem       Date:  2011-07-21       Impact factor: 3.641

5.  Synthesis and evaluation of 4-substituted piperidines and piperazines as balanced affinity μ opioid receptor (MOR) agonist/δ opioid receptor (DOR) antagonist ligands.

Authors:  Aaron M Bender; Mary J Clark; Michael P Agius; John R Traynor; Henry I Mosberg
Journal:  Bioorg Med Chem Lett       Date:  2013-12-11       Impact factor: 2.823

6.  The acidity of uracil and uracil analogs in the gas phase: four surprisingly acidic sites and biological implications.

Authors:  Mary Ann Kurinovich; Jeehiun K Lee
Journal:  J Am Soc Mass Spectrom       Date:  2002-08       Impact factor: 3.109

7.  Synthesis and antiviral activity of 6-benzyl analogs of 1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine (HEPT) as potent and selective anti-HIV-1 agents.

Authors:  H Tanaka; H Takashima; M Ubasawa; K Sekiya; N Inouye; M Baba; S Shigeta; R T Walker; E De Clercq; T Miyasaka
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

8.  4-(2-Meth-oxy-phen-yl)piperazin-1-ium 6-chloro-5-isopropyl-2,4-dioxopyrimidin-1-ide.

Authors:  Fatmah A M Al-Omary; Hazem A Ghabbour; Ali A El-Emam; C S Chidan Kumar; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-05

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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  2 in total

1.  Crystal-structure studies of 4-phenyl-piperazin-1-ium 4-eth-oxy-benzoate monohydrate, 4-phenyl-piperazin-1-ium 4-meth-oxy-benzoate monohydrate, 4-phenyl-piperazin-1-ium 4-methyl-benzoate monohydrate and 4-phenyl-piperazin-1-ium tri-fluoro-acetate 0.12-hydrate.

Authors:  Ninganayaka Mahesha; Haruvegowda Kiran Kumar; Mehmet Akkurt; Hemmige S Yathirajan; Sabine Foro; Mohammed S M Abdelbaky; Santiago Garcia-Granda
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-06-10

2.  The structures of eleven (4-phen-yl)piperazinium salts containing organic anions.

Authors:  Sreeramapura D Archana; Haruvegowda Kiran Kumar; Hemmige S Yathirajan; Sabine Foro; Ray J Butcher
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-09-22
  2 in total

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