| Literature DB >> 26396658 |
Gaurav Jerath1, Prakash Kishore Hazam1, Vibin Ramakrishnan1.
Abstract
We present a computational toolkit consisting of five utility tools, for performing basic operations on a protein structure file in PDB format. The toolkit consists of five different programs which can be integrated as part of a pipeline for computational protein structure characterization or as a standalone analysis package. The programs include tools for chirality check for amino acids (ProChiral), contact map generation (CoMa), data redundancy (DaRe), hydrogen bond potential energy (HyPE) and electrostatic interaction energy (EsInE). All programs in the toolkit can be accessed and downloaded through the following link: http://www.iitg.ac.in/bpetoolkit/.Entities:
Keywords: Protein design; Protein engineering; Protein structure; Toolkit
Year: 2014 PMID: 26396658 PMCID: PMC4571720 DOI: 10.1007/s11693-014-9156-4
Source DB: PubMed Journal: Syst Synth Biol ISSN: 1872-5325