Literature DB >> 26396658

bPE toolkit: toolkit for computational protein engineering.

Gaurav Jerath1, Prakash Kishore Hazam1, Vibin Ramakrishnan1.   

Abstract

We present a computational toolkit consisting of five utility tools, for performing basic operations on a protein structure file in PDB format. The toolkit consists of five different programs which can be integrated as part of a pipeline for computational protein structure characterization or as a standalone analysis package. The programs include tools for chirality check for amino acids (ProChiral), contact map generation (CoMa), data redundancy (DaRe), hydrogen bond potential energy (HyPE) and electrostatic interaction energy (EsInE). All programs in the toolkit can be accessed and downloaded through the following link: http://www.iitg.ac.in/bpetoolkit/.

Entities:  

Keywords:  Protein design; Protein engineering; Protein structure; Toolkit

Year:  2014        PMID: 26396658      PMCID: PMC4571720          DOI: 10.1007/s11693-014-9156-4

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  7 in total

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Journal:  Bioinformatics       Date:  2011-04-05       Impact factor: 6.937

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Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

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  7 in total
  2 in total

1.  ProteinTools: a toolkit to analyze protein structures.

Authors:  Noelia Ferruz; Steffen Schmidt; Birte Höcker
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

2.  Peptide-based delivery vectors with pre-defined geometrical locks.

Authors:  Ruchika Goyal; Gaurav Jerath; Aneesh Chandrasekharan; T R Santhosh Kumar; Vibin Ramakrishnan
Journal:  RSC Med Chem       Date:  2020-08-13
  2 in total

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