Literature DB >> 26395091

Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae".

Johannes Wittmann1, Jochen Klumpp2, Andrea I Moreno Switt3, Abdelbaset Yagubi4, Hans-Wolfgang Ackermann5, Martin Wiedmann6, Antonet Svircev4, John H E Nash7, Andrew M Kropinski8,9,10.   

Abstract

The GenBank database currently contains sequence data for 33 N4-like viruses, with only one, Escherichia phage N4, being formally recognized by the ICTV. The genus N4likevirus is uniquely characterized by that fact that its members possess an extremely large, virion-associated RNA polymerase. Using a variety of proteomic, genomic and phylogenetic tools, we have demonstrated that the N4-like phages are not monophyletic and that N4 is actually a genomic orphan. We propose to create four new genera: "G7cvirus" (consisting of phages G7C, IME11, KBNP21, vB_EcoP_PhAPEC5, vB_EcoP_PhAPEC7, Bp4, EC1-UPM and pSb-1), "Lit1virus" (LIT1, PA26 and vB_PaeP_C2-10_Ab09), "Sp58virus" (SP058 and SP076), and "Dss3virus" (DSS3φ2 and EE36φ1). We propose that coliphage N4, the members of "G7cvirus", Erwinia phage Ea9-2, and Achromobacter phage JWAlpha should be considered members of the same subfamily, which we tentatively call the "Enquartavirinae".

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Year:  2015        PMID: 26395091     DOI: 10.1007/s00705-015-2609-6

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  14 in total

1.  Characterization and complete genome sequence of vB_EcoP-Bp4, a novel polyvalent N4-like bacteriophage that infects chicken pathogenic Escherichia coli.

Authors:  Can Zhang; Yanxiang Ma; Ting Wang; Huzhi Sun; Guomin Lu; Huiying Ren
Journal:  Virol Sin       Date:  2016-08       Impact factor: 4.327

2.  Characterization and Complete Genome Sequences of Three N4-Like Roseobacter Phages Isolated from the South China Sea.

Authors:  Baolian Li; Si Zhang; Lijuan Long; Sijun Huang
Journal:  Curr Microbiol       Date:  2016-06-07       Impact factor: 2.188

3.  Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption.

Authors:  Libera Latino; Cédric Midoux; Gilles Vergnaud; Christine Pourcel
Journal:  PLoS One       Date:  2019-04-16       Impact factor: 3.240

4.  Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Authors:  Christine Pourcel; Cédric Midoux; Libera Latino; Marie-Agnès Petit; Gilles Vergnaud
Journal:  Genome Announc       Date:  2016-11-17

5.  Comparative Analysis of 37 Acinetobacter Bacteriophages.

Authors:  Dann Turner; Hans-Wolfgang Ackermann; Andrew M Kropinski; Rob Lavigne; J Mark Sutton; Darren M Reynolds
Journal:  Viruses       Date:  2017-12-24       Impact factor: 5.048

6.  Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves.

Authors:  Pantelis Katharios; Panos G Kalatzis; Constantina Kokkari; Elena Sarropoulou; Mathias Middelboe
Journal:  PLoS One       Date:  2017-12-28       Impact factor: 3.240

7.  Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1.

Authors:  Ananda Shankar Bhattacharjee; Amir Mohaghegh Motlagh; Eddie B Gilcrease; Md Imdadul Islam; Sherwood R Casjens; Ramesh Goel
Journal:  Stand Genomic Sci       Date:  2017-12-18

8.  vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria.

Authors:  Benjamin Bolduc; Ho Bin Jang; Guilhem Doulcier; Zhi-Qiang You; Simon Roux; Matthew B Sullivan
Journal:  PeerJ       Date:  2017-05-03       Impact factor: 2.984

9.  Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Authors:  Vera Bischoff; Boyke Bunk; Jan P Meier-Kolthoff; Cathrin Spröer; Anja Poehlein; Marco Dogs; Mary Nguyen; Jörn Petersen; Rolf Daniel; Jörg Overmann; Markus Göker; Meinhard Simon; Thorsten Brinkhoff; Cristina Moraru
Journal:  ISME J       Date:  2019-02-04       Impact factor: 10.302

10.  Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.

Authors:  Colin Buttimer; Hanne Hendrix; Alan Lucid; Horst Neve; Jean-Paul Noben; Charles Franz; Jim O'Mahony; Rob Lavigne; Aidan Coffey
Journal:  Pharmaceuticals (Basel)       Date:  2018-05-14
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