| Literature DB >> 26394227 |
Stefania Salvatore1, Jørgen Gustav Bramness1, Malcolm J Reid2, Kevin Victor Thomas2, Christopher Harman2, Jo Røislien3.
Abstract
BACKGROUND: Wastewater-based epidemiology (WBE) is a new methodology for estimating the drug load in a population. Simple summary statistics and specification tests have typically been used to analyze WBE data, comparing differences between weekday and weekend loads. Such standard statistical methods may, however, overlook important nuanced information in the data. In this study, we apply functional data analysis (FDA) to WBE data and compare the results to those obtained from more traditional summary measures.Entities:
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Year: 2015 PMID: 26394227 PMCID: PMC4578919 DOI: 10.1371/journal.pone.0138669
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Raw data, individual curves and results from the FPCA for each drug.
1.1–1.2 shows the raw data for each drug; 1.3–1.4 shows the raw data (light grey) with the individually fitted curves (dark grey) and the mean of these curves (black); 1.5–1.10 shows the mean of the fitted curves (solid line) and how the shape of an individual curve differs from the mean curve if a multiple of the principal component curve is added to (+ +) or subtracted from (- -) the mean curve. The multiples correspond to one SD of the FPC1, FPC2 and FPC3 scores, respectively.
Wastewater drug loads for 42 European cities throughout the week.
| Day | Ecstasy (MDMA) | Amphetamine | ||
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| Median | Q1, Q3 | Median | Q1, Q3 | |
| Wednesday | 5.7 | 3.4, 12.7 | 23.4 | 13.4, 53.5 |
| Thursday | 6.8 | 2.6, 11.8 | 29.8 | 15.5, 65.1 |
| Friday | 8.5 | 4.2, 20.3 | 30.5 | 14.8, 72.6 |
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| Monday | 14.1 | 5.8, 26.9 | 31.3 | 16.9, 69.3 |
| Tuesday | 9.9 | 5.0, 17.9 | 28.3 | 16.2, 64.0 |
*Statistically significant difference between weekday (Mon-Fri) and weekend (Sat-Sun) loads using the Wilcox test (p-value < 0.001)
**No statistically significant difference between weekday (Mon-Fri) and weekend (Sat-Sun) loads using the Wilcox test
(p-value = 0.369)
The data sets supporting the table are freely available [17].
Pearson correlation coefficients between FPC scores for the ecstasy (MDMA) loads and simple summary measures.
| Simple summary measures | FPCA scores | |||||
|---|---|---|---|---|---|---|
| Mean | d | AUC | FPC1 | FPC2 | FPC3 | |
| Mean | 1.000 | |||||
| d | 0.019 | 1.000 | ||||
| AUC | 0.999 | 0.044 | 1.000 | |||
| FPC1 | 0.999 | 0.044 | 0.999 | 1.000 | ||
| FPC2 | -0.005 | 0.762 | 0.009 | 0.000 | 1.000 | |
| FPC3 | 0.038 | -0.497 | 0.013 | 0.000 | 0.000 | 1.000 |
*Overall mean of the log-transformed data throughout the seven day week.
**Difference: mean of the log-transformed data (weekend) minus mean of the log-transformed data (weekdays).
Pearson correlation coefficients between FPC scores for amphetamine loads and simple summary measures.
| Simple summary measures | FPCA scores | |||||
|---|---|---|---|---|---|---|
| Mean | d | AUC | FPC1 | FPC2 | FPC3 | |
| Mean | 1.000 | |||||
| d | -0.267 | 1.000 | ||||
| AUC | 0.999 | -0.256 | 1.000 | |||
| FPC1 | 0.999 | -0.262 | 0.999 | 1.000 | ||
| FPC2 | -0.005 | -0.217 | 0.003 | 0.000 | 1.000 | |
| FPC3 | 0.009 | -0.760 | -0.011 | 0.000 | 0.000 | 1.000 |
*Overall mean of the log-transformed data throughout the seven day week.
**Difference: mean of the log-transformed data (weekend) minus mean of the log-transformed data (weekdays).
Fig 2FANOVA F-permutation test plot separately for each drug and for each explanatory variable.
2.1–2.2 show how the p-value of the permutation F-test changes, as different values of longitude are chosen as grouping; 2.3–2.4 show how the p-value of the permutation F-test changes, as different values of latitude are chosen as grouping; 2.5–2.6 show how the p-value of the permutation F-test changes, as different values of density are chosen as grouping; 2.7–2.8 show how the p-value of the permutation F-test changes, as different values of relative size are chosen as grouping; 2.9–2.10 show how the p-value of the permutation F-test changes, as different values of gross domestic product (GDP) are chosen as grouping.
Multiple regression analyses with functional principal component scores for ecstasy (MDMA) as dependent variable and longitude, latitude, gross domestic product, population density and relative size of the city as explanatory variables.
| FPC1 Scores | FPC2 Scores | FPC3 Scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Multiple Model(AIC | Optimal Model(AIC | Multiple Model(AIC | Optimal Model(AIC | Multiple Model(AIC | Optimal Model(AIC | |||||||
| Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | |
| Longitude | -0.155(-0.258,-0.052) | 0.006 | -0.161(-0.250,-0.071) | 0.001 | -0.029(-0.059,0.001) | 0.065 | -0.026(-0.052,0.001) | 0.068 | 0.007(-0.008,0.022) | 0.390 | ||
| Latitude | 0.122(-0.026,0.269) | 0.115 | 0.130(0.009,0.251) | 0.042 | 0.032(-0.011,0.075) | 0.150 | 0.003(-0.019,0.024) | 0.821 | ||||
| Gross domestic product | 0.137(-0.307,0.581) | 0.549 | -0.038(-0.167,0.092) | 0.572 | -0.040(-0.105,0.024) | 0.230 | ||||||
| Population density | 0.044(-0.148,0.237) | 0.654 | 0.024(-0.032,0.080) | 0.419 | 0.017(-0.011,0.045) | 0.255 | ||||||
| Size of city | 2.414(-11.975,16.804) | 0.744 | 1.903(-2.285,6.091) | 0.380 | -2.082(-4.184,0.020) | 0.061 | ||||||
* Akaike's information criterion.
a Number taken from http://en.wikipedia.org/wiki/List_of_countries_by_GDP_%28nominal%29_per_capita.
b Number of inhabitants in city divided by the urban area in square kilometres.
c Number of inhabitants in city divided by the number of inhabitants in the country.
Multiple regression analyses with functional principal component scores for amphetamine as dependent variable and longitude, latitude, gross domestic product, population density and size of the city as explanatory variables.
| FPC1 Scores | FPC2 Scores | FPC3 Scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Multiple Model(AIC | Optimal Model(AIC | Multiple Model(AIC | Optimal Model(AIC | Multiple Model(AIC | Optimal Model(AIC | |||||||
| Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | Estimate(95% CI) | p-value | |
| Longitude | -0.082(-0.221,0.057) | 0.256 | -0.074(-0.178,0.030) | 0.175 | -0.005(-0.022,0.012) | 0.584 | 0.004(-0.0004,0.008) | 0.089 | ||||
| Latitude | 0.295(0.124,0.465) | 0.002 | 0.255(0.121,0.389) | <0.001 | 0.002(-0.019,0.023) | 0.861 | -0.005(-0.010,0.0001) | 0.064 | -0.004(-0.009,-0.0004) | 0.039 | ||
| Gross domestic product | -0.105(-0.623,0.368) | 0.693 | -0.044(-0.107,0.019) | 0.185 | -0.034(-0.082,0.014) | 0.172 | 0.005(-0.011,0.021) | 0.575 | ||||
| Population density | 0.123(-0.142,0.384) | 0.368 | -0.008(-0.040,0.024) | 0.610 | -0.0003(-0.008,0.008) | 0.938 | ||||||
| Size of city | 1.749(-16.408,19.907) | 0.852 | 0.049(-2.169,2.267) | 0.993 | -0.314(-0.870,0.242) | 0.278 | ||||||
* Akaike's information criterion.
a Number taken from http://en.wikipedia.org/wiki/List_of_countries_by_GDP_%28nominal%29_per_capita.
b Number of inhabitants in city divided by the urban area in square kilometres.
c Number of inhabitants in city divided by the number of inhabitants in the country.