Literature DB >> 26391079

Latent analysis of unmodified biomolecules and their complexes in solution with attomole detection sensitivity.

Emma V Yates1, Thomas Müller1, Luke Rajah1, Erwin J De Genst1, Paolo Arosio1, Sara Linse2, Michele Vendruscolo1, Christopher M Dobson1, Tuomas P J Knowles1.   

Abstract

The study of biomolecular interactions is central to an understanding of function, malfunction and therapeutic modulation of biological systems, yet often involves a compromise between sensitivity and accuracy. Many conventional analytical steps and the procedures required to facilitate sensitive detection, such as the incorporation of chemical labels, are prone to perturb the complexes under observation. Here we present a 'latent' analysis approach that uses chemical and microfluidic tools to reveal, through highly sensitive detection of a labelled system, the behaviour of the physiologically relevant unlabelled system. We implement this strategy in a native microfluidic diffusional sizing platform, allowing us to achieve detection sensitivity at the attomole level, determine the hydrodynamic radii of biomolecules that vary by over three orders of magnitude in molecular weight, and study heterogeneous mixtures. We illustrate these key advantages by characterizing a complex of an antibody domain in the solution phase and under physiologically relevant conditions.

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Year:  2015        PMID: 26391079     DOI: 10.1038/nchem.2344

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  43 in total

1.  Quantitative analysis of molecular interaction in a microfluidic channel: the T-sensor.

Authors:  A E Kamholz; B H Weigl; B A Finlayson; P Yager
Journal:  Anal Chem       Date:  1999-12-01       Impact factor: 6.986

2.  Optical measurement of transverse molecular diffusion in a microchannel.

Authors:  A E Kamholz; E A Schilling; P Yager
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

Review 3.  Mapping protein-protein interactions in solution by NMR spectroscopy.

Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

4.  Solvent-induced collapse of alpha-synuclein and acid-denatured cytochrome c.

Authors:  A S Morar; A Olteanu; G B Young; G J Pielak
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

5.  Structure and dynamics of micelle-bound human alpha-synuclein.

Authors:  Tobias S Ulmer; Ad Bax; Nelson B Cole; Robert L Nussbaum
Journal:  J Biol Chem       Date:  2004-12-22       Impact factor: 5.157

6.  Free-solution, label-free molecular interactions studied by back-scattering interferometry.

Authors:  Darryl J Bornhop; Joey C Latham; Amanda Kussrow; Dmitry A Markov; Richard D Jones; Henrik S Sørensen
Journal:  Science       Date:  2007-09-21       Impact factor: 47.728

Review 7.  Nanobodies: natural single-domain antibodies.

Authors:  Serge Muyldermans
Journal:  Annu Rev Biochem       Date:  2013-03-13       Impact factor: 23.643

8.  The interaction of amino acids with ophthaldialdehyde: a kinetic study and spectrophotometric assay of the reaction product.

Authors:  V J Svedas; I J Galaev; I L Borisov; I V Berezin
Journal:  Anal Biochem       Date:  1980-01-01       Impact factor: 3.365

9.  Mapping long-range interactions in alpha-synuclein using spin-label NMR and ensemble molecular dynamics simulations.

Authors:  Matthew M Dedmon; Kresten Lindorff-Larsen; John Christodoulou; Michele Vendruscolo; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2005-01-19       Impact factor: 15.419

10.  Probing protein aggregation with quartz crystal microbalances.

Authors:  Tuomas P J Knowles; Glyn L Devlin; Christopher M Dobson; Mark E Welland
Journal:  Methods Mol Biol       Date:  2011
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  17 in total

1.  Bioanalytical chemistry: Eavesdropping on interactions.

Authors:  Enrique Valera; Ryan C Bailey
Journal:  Nat Chem       Date:  2015-10       Impact factor: 24.427

2.  π-Clamp-Mediated Homo- and Heterodimerization of Single-Domain Antibodies via Site-Specific Homobifunctional Conjugation.

Authors:  Ross J Taylor; Mauricio Aguilar Rangel; Michael B Geeson; Pietro Sormanni; Michele Vendruscolo; Gonçalo J L Bernardes
Journal:  J Am Chem Soc       Date:  2022-07-14       Impact factor: 16.383

3.  Mechanism of biosurfactant adsorption to oil/water interfaces from millisecond scale tensiometry measurements.

Authors:  Lingling Kong; Kadi Liis Saar; Raphael Jacquat; Liu Hong; Aviad Levin; Hongze Gang; Ruqiang Ye; Bozhong Mu; Tuomas P J Knowles
Journal:  Interface Focus       Date:  2017-10-20       Impact factor: 3.906

4.  Kinetic fingerprints differentiate the mechanisms of action of anti-Aβ antibodies.

Authors:  Sara Linse; Tom Scheidt; Katja Bernfur; Michele Vendruscolo; Christopher M Dobson; Samuel I A Cohen; Eimantas Sileikis; Martin Lundqvist; Fang Qian; Tiernan O'Malley; Thierry Bussiere; Paul H Weinreb; Catherine K Xu; Georg Meisl; Sean R A Devenish; Tuomas P J Knowles; Oskar Hansson
Journal:  Nat Struct Mol Biol       Date:  2020-09-28       Impact factor: 15.369

5.  On-chip measurements of protein unfolding from direct observations of micron-scale diffusion.

Authors:  Yuewen Zhang; Emma V Yates; Liu Hong; Kadi L Saar; Georg Meisl; Christopher M Dobson; Tuomas P J Knowles
Journal:  Chem Sci       Date:  2018-02-09       Impact factor: 9.825

6.  Continuous Flow Reactors from Microfluidic Compartmentalization of Enzymes within Inorganic Microparticles.

Authors:  Tuuli A Hakala; Friedrich Bialas; Zenon Toprakcioglu; Birgit Bräuer; Kevin N Baumann; Aviad Levin; Gonçalo J L Bernardes; Christian F W Becker; Tuomas P J Knowles
Journal:  ACS Appl Mater Interfaces       Date:  2020-07-08       Impact factor: 9.229

7.  The Investigation of Protein Diffusion via H-Cell Microfluidics.

Authors:  Miao Yu; Tiago Castanheira Silva; Andries van Opstal; Stefan Romeijn; Hayley A Every; Wim Jiskoot; Geert-Jan Witkamp; Marcel Ottens
Journal:  Biophys J       Date:  2019-01-22       Impact factor: 4.033

8.  Secondary nucleation and elongation occur at different sites on Alzheimer's amyloid-β aggregates.

Authors:  Tom Scheidt; Urszula Łapińska; Janet R Kumita; Daniel R Whiten; David Klenerman; Mark R Wilson; Samuel I A Cohen; Sara Linse; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles; Paolo Arosio
Journal:  Sci Adv       Date:  2019-04-17       Impact factor: 14.136

9.  Scalable integration of nano-, and microfluidics with hybrid two-photon lithography.

Authors:  Oliver Vanderpoorten; Quentin Peter; Pavan K Challa; Ulrich F Keyser; Jeremy Baumberg; Clemens F Kaminski; Tuomas P J Knowles
Journal:  Microsyst Nanoeng       Date:  2019-09-09       Impact factor: 7.127

10.  Cooperative Assembly of Hsp70 Subdomain Clusters.

Authors:  Maya A Wright; Francesco A Aprile; Mathias M J Bellaiche; Thomas C T Michaels; Thomas Müller; Paolo Arosio; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles
Journal:  Biochemistry       Date:  2018-05-29       Impact factor: 3.162

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