Literature DB >> 26388429

Nucleotide excision repair in humans.

Graciela Spivak1.   

Abstract

The demonstration of DNA damage excision and repair replication by Setlow, Howard-Flanders, Hanawalt and their colleagues in the early 1960s, constituted the discovery of the ubiquitous pathway of nucleotide excision repair (NER). The serial steps in NER are similar in organisms from unicellular bacteria to complex mammals and plants, and involve recognition of lesions, adducts or structures that disrupt the DNA double helix, removal of a short oligonucleotide containing the offending lesion, synthesis of a repair patch copying the opposite undamaged strand, and ligation, to restore the DNA to its original form. The transcription-coupled repair (TCR) subpathway of NER, discovered nearly two decades later, is dedicated to the removal of lesions from the template DNA strands of actively transcribed genes. In this review I will outline the essential factors and complexes involved in NER in humans, and will comment on additional factors and metabolic processes that affect the efficiency of this important process.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DNA repair; Global genome repair; Nucleotide excision repair; Transcription-coupled repair

Mesh:

Substances:

Year:  2015        PMID: 26388429      PMCID: PMC4688078          DOI: 10.1016/j.dnarep.2015.09.003

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  61 in total

Review 1.  DNA damage sensing by the ATM and ATR kinases.

Authors:  Alexandre Maréchal; Lee Zou
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 2.  Nucleotide excision repair in eukaryotes.

Authors:  Orlando D Schärer
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

Review 3.  The complex choreography of transcription-coupled repair.

Authors:  Graciela Spivak; Ann K Ganesan
Journal:  DNA Repair (Amst)       Date:  2014-04-19

Review 4.  Ubiquitin at work: the ubiquitous regulation of the damage recognition step of NER.

Authors:  Loes van Cuijk; Wim Vermeulen; Jurgen A Marteijn
Journal:  Exp Cell Res       Date:  2014-07-22       Impact factor: 3.905

5.  p53 and DNA damage-inducible expression of the xeroderma pigmentosum group C gene.

Authors:  Shanthi Adimoolam; James M Ford
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-19       Impact factor: 11.205

6.  Irofulven cytotoxicity depends on transcription-coupled nucleotide excision repair and is correlated with XPG expression in solid tumor cells.

Authors:  Florence Koeppel; Virginie Poindessous; Vladimir Lazar; Eric Raymond; Alain Sarasin; Annette K Larsen
Journal:  Clin Cancer Res       Date:  2004-08-15       Impact factor: 12.531

7.  BRCA1 induces DNA damage recognition factors and enhances nucleotide excision repair.

Authors:  Anne-Renee Hartman; James M Ford
Journal:  Nat Genet       Date:  2002-08-26       Impact factor: 38.330

8.  Three DNA polymerases, recruited by different mechanisms, carry out NER repair synthesis in human cells.

Authors:  Tomoo Ogi; Siripan Limsirichaikul; René M Overmeer; Marcel Volker; Katsuya Takenaka; Ross Cloney; Yuka Nakazawa; Atsuko Niimi; Yoshio Miki; Nicolaas G Jaspers; Leon H F Mullenders; Shunichi Yamashita; Maria I Fousteri; Alan R Lehmann
Journal:  Mol Cell       Date:  2010-03-12       Impact factor: 17.970

9.  ATP-dependent chromatin remodeling in the DNA-damage response.

Authors:  Hannes Lans; Jurgen A Marteijn; Wim Vermeulen
Journal:  Epigenetics Chromatin       Date:  2012-01-30       Impact factor: 4.954

Review 10.  DNA repair diseases: What do they tell us about cancer and aging?

Authors:  Carlos Fm Menck; Veridiana Munford
Journal:  Genet Mol Biol       Date:  2014-03       Impact factor: 1.771

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  92 in total

Review 1.  Obesity and cancer: A mechanistic overview of metabolic changes in obesity that impact genetic instability.

Authors:  Pallavi Kompella; Karen M Vasquez
Journal:  Mol Carcinog       Date:  2019-06-05       Impact factor: 4.784

2.  The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair.

Authors:  Brandon C Case; Silas Hartley; Memie Osuga; David Jeruzalmi; Manju M Hingorani
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Molecular biology: The long and short of a DNA-damage response.

Authors:  Antonio Conconi; Brendan Bell
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

Review 4.  Regulation of DNA Alkylation Damage Repair: Lessons and Therapeutic Opportunities.

Authors:  Jennifer M Soll; Robert W Sobol; Nima Mosammaparast
Journal:  Trends Biochem Sci       Date:  2016-11-02       Impact factor: 13.807

5.  Mechanistic insights in transcription-coupled nucleotide excision repair of ribosomal DNA.

Authors:  Laurianne Daniel; Elena Cerutti; Lise-Marie Donnio; Julie Nonnekens; Christophe Carrat; Simona Zahova; Pierre-Olivier Mari; Giuseppina Giglia-Mari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

6.  Zebrafish CYP1A expression in transgenic Caenorhabditis elegans protects from exposures to benzo[a]pyrene and a complex polycyclic aromatic hydrocarbon mixture.

Authors:  Jamie B Harris; Jessica H Hartman; Anthony L Luz; Joanna Y Wilson; Audrey Dinyari; Joel N Meyer
Journal:  Toxicology       Date:  2020-05-01       Impact factor: 4.221

Review 7.  Mechanistic insights into transcription coupled DNA repair.

Authors:  Bibhusita Pani; Evgeny Nudler
Journal:  DNA Repair (Amst)       Date:  2017-06-09

8.  Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates.

Authors:  Norie Sugitani; Markus W Voehler; Michelle S Roh; Agnieszka M Topolska-Woś; Walter J Chazin
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

Review 9.  DNA Damage and Associated DNA Repair Defects in Disease and Premature Aging.

Authors:  Vinod Tiwari; David M Wilson
Journal:  Am J Hum Genet       Date:  2019-08-01       Impact factor: 11.025

10.  Effect of ERCC2 rs13181 and rs1799793 polymorphisms and environmental factors on the prognosis of patients with lung cancer.

Authors:  Haorui Zhang; Yutao Li; Shicheng Guo; Yi Wang; Haijian Wang; Daru Lu; Jiucun Wang; Li Jin; Gengxi Jiang; Junjie Wu; Yiping Han; Juhong Li
Journal:  Am J Transl Res       Date:  2020-10-15       Impact factor: 4.060

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