Literature DB >> 26385840

Using whole exome sequencing and bioformatics in the molecular autopsy of a sudden unexplained death syndrome (SUDS) case.

Chun Wang1, Shan Duan2, Guoli Lv3, Xiaoping Lai4, Rui Chen4, Hanguang Lin4, Shengyuan Qiu4, Jianpin Tang4, Wenjian Kuang4, Chuanchao Xu5.   

Abstract

Whole exome sequencing (WES) and bioinformatics analysis were used to investigate potential disease-causing gene mutations in a sudden unexplained death syndrome (SUDS) case after autopsy and pathology tests failed to suggest an obvious disease mechanism. Following whole exome sequencing, a 3-step bioinformatics filtering procedure was carried out to identify possible pathogenic genomic features. Single nucleotide variations (SNVs) were analyzed and ranked by likely mutation impact using various open online tools. After screening, we identified G643S as a putative causative heterozygous mutation in the KCNQ1 gene. This mutation has been reported in abnormalities consistent with SUDS, such as IKs in cardiac myocytes, a condition that predisposes for arrhythmias. Our work demonstrates the application of sequencing technology at the whole exome level for determining potential causes of an otherwise unexplained death.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Disease mutations; Exome; Forensic bioinformatics; Forensic science; Second-generation sequencing; Sudden unexplained death syndrome (SUDS)

Mesh:

Substances:

Year:  2015        PMID: 26385840     DOI: 10.1016/j.forsciint.2015.08.022

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  5 in total

1.  The ethics of conducting molecular autopsies in cases of sudden death in the young.

Authors:  Amy L McGuire; Quianta Moore; Mary Majumder; Magdalena Walkiewicz; Christine M Eng; John W Belmont; Salma Nassef; Sandra Darilek; Katie Rutherford; Stacey Pereira; Steven E Scherer; V Reid Sutton; Dwayne Wolf; Richard A Gibbs; Roger Kahn; Luis A Sanchez
Journal:  Genome Res       Date:  2016-07-13       Impact factor: 9.043

2.  Defining Sudden Infant Death and Sudden Intrauterine Unexpected Death Syndromes with Regard to Anatomo-Pathological Examination.

Authors:  Giulia Ottaviani
Journal:  Front Pediatr       Date:  2016-09-21       Impact factor: 3.418

3.  Molecular investigation by whole exome sequencing revealed a high proportion of pathogenic variants among Thai victims of sudden unexpected death syndrome.

Authors:  Bhoom Suktitipat; Sakda Sathirareuangchai; Ekkapong Roothumnong; Wanna Thongnoppakhun; Purin Wangkiratikant; Nutchavadee Vorasan; Rungroj Krittayaphong; Manop Pithukpakorn; Warangkna Boonyapisit
Journal:  PLoS One       Date:  2017-07-13       Impact factor: 3.240

4.  Unveiling a sudden unexplained death case by whole exome sequencing and bioinformatic analysis.

Authors:  Martina Modena; Vincenzo Castiglione; Paolo Aretini; Chiara M Mazzanti; Enrica Chiti; Alberto Giannoni; Michele Emdin; Marco Di Paolo
Journal:  Mol Genet Genomic Med       Date:  2020-02-26       Impact factor: 2.183

5.  Cardio-pathogenic variants in unexplained intrauterine fetal death: a retrospective pilot study.

Authors:  Dana A Muin; Martina Kollmann; Jasmin Blatterer; Gregor Hoermann; Peter W Husslein; Ingrid Lafer; Erwin Petek; Thomas Schwarzbraun
Journal:  Sci Rep       Date:  2021-03-24       Impact factor: 4.379

  5 in total

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