Literature DB >> 26384278

Predicting Radiotherapy Responses and Treatment Outcomes Through Analysis of Circulating Tumor DNA.

Aadel A Chaudhuri1, Michael S Binkley1, Evan C Osmundson1, Ash A Alizadeh2, Maximilian Diehn3.   

Abstract

Tumors continually shed DNA into the blood where it can be detected as circulating tumor DNA (ctDNA). Although this phenomenon has been recognized for decades, techniques that are sensitive and specific enough to robustly detect ctDNA have only become available recently. Quantification of ctDNA represents a new approach for cancer detection and disease burden quantification that has the potential to revolutionize response assessment and personalized treatment in radiation oncology. Analysis of ctDNA has many potential applications, including detection of minimal residual disease following radiotherapy, noninvasive tumor genotyping, and early detection of tumor recurrence. Ultimately, ctDNA-based assays could lead to personalization of therapy based on identification of somatic alterations present in tumors and changes in ctDNA concentrations before and after treatment. In this review, we discuss methods of ctDNA detection and clinical applications of ctDNA-based biomarkers in radiation oncology, with a focus on recently developed techniques that use next-generation sequencing for ctDNA quantification.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26384278      PMCID: PMC4575502          DOI: 10.1016/j.semradonc.2015.05.001

Source DB:  PubMed          Journal:  Semin Radiat Oncol        ISSN: 1053-4296            Impact factor:   5.934


  57 in total

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2.  Quantitation of human papillomavirus DNA in plasma of oropharyngeal carcinoma patients.

Authors:  Hongbin Cao; Alice Banh; Shirley Kwok; Xiaoli Shi; Simon Wu; Trevor Krakow; Brian Khong; Brindha Bavan; Rajeev Bala; Benjamin A Pinsky; Dimitrios Colevas; Nader Pourmand; Albert C Koong; Christina S Kong; Quynh-Thu Le
Journal:  Int J Radiat Oncol Biol Phys       Date:  2011-10-08       Impact factor: 7.038

3.  FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution.

Authors:  Aaron M Newman; Scott V Bratman; Henning Stehr; Luke J Lee; Chih Long Liu; Maximilian Diehn; Ash A Alizadeh
Journal:  Bioinformatics       Date:  2014-08-20       Impact factor: 6.937

4.  Detection of mutated BRAFV600E variant in circulating DNA of stage III-IV melanoma patients.

Authors:  Maria Daniotti; Viviana Vallacchi; Licia Rivoltini; Roberto Patuzzo; Mario Santinami; Flavio Arienti; Gianluca Cutolo; Marco A Pierotti; Giorgio Parmiani; Monica Rodolfo
Journal:  Int J Cancer       Date:  2007-06-01       Impact factor: 7.396

5.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

6.  Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA.

Authors:  Geoffrey R Oxnard; Cloud P Paweletz; Yanan Kuang; Stacy L Mach; Allison O'Connell; Melissa M Messineo; Jason J Luke; Mohit Butaney; Paul Kirschmeier; David M Jackman; Pasi A Jänne
Journal:  Clin Cancer Res       Date:  2014-01-15       Impact factor: 12.531

7.  Soluble normal and mutated DNA sequences from single-copy genes in human blood.

Authors:  G D Sorenson; D M Pribish; F H Valone; V A Memoli; D J Bzik; S L Yao
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  1994 Jan-Feb       Impact factor: 4.254

8.  Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing.

Authors:  Azeet Narayan; Nicholas J Carriero; Scott N Gettinger; Jeannie Kluytenaar; Kevin R Kozak; Torunn I Yock; Nicole E Muscato; Pedro Ugarelli; Roy H Decker; Abhijit A Patel
Journal:  Cancer Res       Date:  2012-05-10       Impact factor: 12.701

9.  Comparison of KRAS Mutation Assessment in Tumor DNA and Circulating Free DNA in Plasma and Serum Samples.

Authors:  Shethah R Morgan; Jessica Whiteley; Emma Donald; John Smith; Marcia T Eisenberg; Eddie Kallam; Lauren Kam-Morgan
Journal:  Clin Med Insights Pathol       Date:  2012-05-15

10.  Tumor-associated copy number changes in the circulation of patients with prostate cancer identified through whole-genome sequencing.

Authors:  Ellen Heitzer; Peter Ulz; Jelena Belic; Stefan Gutschi; Franz Quehenberger; Katja Fischereder; Theresa Benezeder; Martina Auer; Carina Pischler; Sebastian Mannweiler; Martin Pichler; Florian Eisner; Martin Haeusler; Sabine Riethdorf; Klaus Pantel; Hellmut Samonigg; Gerald Hoefler; Herbert Augustin; Jochen B Geigl; Michael R Speicher
Journal:  Genome Med       Date:  2013-04-05       Impact factor: 15.266

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  39 in total

1.  Role of Saliva and Salivary Diagnostics in the Advancement of Oral Health.

Authors:  C Dawes; D T W Wong
Journal:  J Dent Res       Date:  2019-02       Impact factor: 6.116

Review 2.  Applications of liquid biopsy in the Pharmacological Audit Trail for anticancer drug development.

Authors:  Abhijit Pal; Rajiv Shinde; Manuel Selvi Miralles; Paul Workman; Johann de Bono
Journal:  Nat Rev Clin Oncol       Date:  2021-03-24       Impact factor: 66.675

Review 3.  Detection of Solid Tumor Molecular Residual Disease (MRD) Using Circulating Tumor DNA (ctDNA).

Authors:  Re-I Chin; Kevin Chen; Abul Usmani; Chanelle Chua; Peter K Harris; Michael S Binkley; Tej D Azad; Jonathan C Dudley; Aadel A Chaudhuri
Journal:  Mol Diagn Ther       Date:  2019-06       Impact factor: 4.074

Review 4.  Translating genomic profiling to gastrointestinal cancer treatment.

Authors:  Kazuto Harada; Dilsa Mizrak Kaya; Yusuke Shimodaira; Shumei Song; Hideo Baba; Jaffer A Ajani
Journal:  Future Oncol       Date:  2017-01-09       Impact factor: 3.404

Review 5.  Future cancer research priorities in the USA: a Lancet Oncology Commission.

Authors:  Elizabeth M Jaffee; Chi Van Dang; David B Agus; Brian M Alexander; Kenneth C Anderson; Alan Ashworth; Anna D Barker; Roshan Bastani; Sangeeta Bhatia; Jeffrey A Bluestone; Otis Brawley; Atul J Butte; Daniel G Coit; Nancy E Davidson; Mark Davis; Ronald A DePinho; Robert B Diasio; Giulio Draetta; A Lindsay Frazier; Andrew Futreal; Sam S Gambhir; Patricia A Ganz; Levi Garraway; Stanton Gerson; Sumit Gupta; James Heath; Ruth I Hoffman; Cliff Hudis; Chanita Hughes-Halbert; Ramy Ibrahim; Hossein Jadvar; Brian Kavanagh; Rick Kittles; Quynh-Thu Le; Scott M Lippman; David Mankoff; Elaine R Mardis; Deborah K Mayer; Kelly McMasters; Neal J Meropol; Beverly Mitchell; Peter Naredi; Dean Ornish; Timothy M Pawlik; Jeffrey Peppercorn; Martin G Pomper; Derek Raghavan; Christine Ritchie; Sally W Schwarz; Richard Sullivan; Richard Wahl; Jedd D Wolchok; Sandra L Wong; Alfred Yung
Journal:  Lancet Oncol       Date:  2017-10-31       Impact factor: 41.316

6.  The Future of Radiobiology.

Authors:  David G Kirsch; Max Diehn; Aparna H Kesarwala; Amit Maity; Meredith A Morgan; Julie K Schwarz; Robert Bristow; Sandra Demaria; Iris Eke; Robert J Griffin; Daphne Haas-Kogan; Geoff S Higgins; Alec C Kimmelman; Randall J Kimple; Isabelle M Lombaert; Li Ma; Brian Marples; Frank Pajonk; Catherine C Park; Dörthe Schaue; Phuoc T Tran; Eric J Bernhard
Journal:  J Natl Cancer Inst       Date:  2018-04-01       Impact factor: 13.506

Review 7.  Promising clinical application of ctDNA in evaluating immunotherapy efficacy.

Authors:  Li Li; Jun Zhang; Xiaoyue Jiang; Qin Li
Journal:  Am J Cancer Res       Date:  2018-10-01       Impact factor: 6.166

Review 8.  Emerging biomarkers for the combination of radiotherapy and immune checkpoint blockers.

Authors:  Claire Lhuillier; Claire Vanpouille-Box; Lorenzo Galluzzi; Silvia Chiara Formenti; Sandra Demaria
Journal:  Semin Cancer Biol       Date:  2017-12-16       Impact factor: 15.707

9.  Evaluating Circulating Tumor DNA From the Cerebrospinal Fluid of Patients With Melanoma and Leptomeningeal Disease.

Authors:  Leomar Y Ballester; Isabella C Glitza Oliva; Dzifa Y Douse; Melissa M Chen; Chieh Lan; Lauren E Haydu; Jason T Huse; Sinchita Roy-Chowdhuri; Rajyalakshmi Luthra; Ignacio I Wistuba; Michael A Davies
Journal:  J Neuropathol Exp Neurol       Date:  2018-07-01       Impact factor: 3.685

10.  Detection of Circulating Tumor DNA in Plasma: A Potential Biomarker for Esophageal Adenocarcinoma.

Authors:  Matthew Egyud; Mohamedtaki Tejani; Arjun Pennathur; James Luketich; Praveen Sridhar; Emiko Yamada; Anders Ståhlberg; Stefan Filges; Paul Krzyzanowski; Jennifer Jackson; Irina Kalatskaya; Wei Jiao; Gradon Nielsen; Zhongren Zhou; Virginia Litle; Lincoln Stein; Tony Godfrey
Journal:  Ann Thorac Surg       Date:  2019-05-03       Impact factor: 4.330

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