Literature DB >> 26378178

Resolving the Origin of Rabbit Hemorrhagic Disease Virus: Insights from an Investigation of the Viral Stocks Released in Australia.

John-Sebastian Eden1, Andrew J Read2, Janine A Duckworth3, Tanja Strive4, Edward C Holmes5.   

Abstract

To resolve the evolutionary history of rabbit hemorrhagic disease virus (RHDV), we performed a genomic analysis of the viral stocks imported and released as a biocontrol measure in Australia, as well as a global phylogenetic analysis. Importantly, conflicts were identified between the sequences determined here and those previously published that may have affected evolutionary rate estimates. By removing likely erroneous sequences, we show that RHDV emerged only shortly before its initial description in China.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26378178      PMCID: PMC4645337          DOI: 10.1128/JVI.01937-15

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  21 in total

1.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

Review 2.  The illegal introduction of rabbit haemorrhagic disease virus in New Zealand.

Authors:  P O'Hara
Journal:  Rev Sci Tech       Date:  2006-04       Impact factor: 1.181

3.  Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.

Authors:  Vladimir N Minin; Erik W Bloomquist; Marc A Suchard
Journal:  Mol Biol Evol       Date:  2008-04-11       Impact factor: 16.240

4.  The complete nucleotide sequence of rabbit haemorrhagic disease virus (Czech strain V351): use of the polymerase chain reaction to detect replication in Australian vertebrates and analysis of viral population sequence variation.

Authors:  A R Gould; J A Kattenbelt; C Lenghaus; C Morrissy; T Chamberlain; B J Collins; H A Westbury
Journal:  Virus Res       Date:  1997-01       Impact factor: 3.303

5.  First case of rabbit haemorrhagic disease in Canada: contaminated flying insect, vs. long-term infection hypothesis.

Authors:  E A Gould
Journal:  Mol Ecol       Date:  2012-01-31       Impact factor: 6.185

6.  Capsid gene divergence in rabbit hemorrhagic disease virus.

Authors:  Mark Kinnear; Celeste C Linde
Journal:  J Gen Virol       Date:  2009-09-23       Impact factor: 3.891

7.  Monitoring the spread of rabbit hemorrhagic disease virus as a new biological agent for control of wild European rabbits in Australia.

Authors:  J Kovaliski
Journal:  J Wildl Dis       Date:  1998-07       Impact factor: 1.535

8.  A competition ELISA for the detection of antibodies to rabbit haemorrhagic disease virus.

Authors:  B J Collins; J R White; C Lenghaus; V Boyd; H A Westbury
Journal:  Vet Microbiol       Date:  1995-01       Impact factor: 3.293

9.  Origin and phylodynamics of rabbit hemorrhagic disease virus.

Authors:  Peter J Kerr; Andrew Kitchen; Edward C Holmes
Journal:  J Virol       Date:  2009-09-16       Impact factor: 5.103

10.  BEAST: Bayesian evolutionary analysis by sampling trees.

Authors:  Alexei J Drummond; Andrew Rambaut
Journal:  BMC Evol Biol       Date:  2007-11-08       Impact factor: 3.260

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  7 in total

1.  Benign Rabbit Calicivirus in New Zealand.

Authors:  Leila J Nicholson; Jackie E Mahar; Tanja Strive; Tao Zheng; Edward C Holmes; Vernon K Ward; Janine A Duckworth
Journal:  Appl Environ Microbiol       Date:  2017-05-17       Impact factor: 4.792

2.  Rabbit Hemorrhagic Disease Virus 2 (RHDV2; GI.2) Is Replacing Endemic Strains of RHDV in the Australian Landscape within 18 Months of Its Arrival.

Authors:  Jackie E Mahar; Robyn N Hall; David Peacock; John Kovaliski; Melissa Piper; Roslyn Mourant; Nina Huang; Susan Campbell; Xingnian Gu; Andrew Read; Nadya Urakova; Tarnya Cox; Edward C Holmes; Tanja Strive
Journal:  J Virol       Date:  2018-01-02       Impact factor: 5.103

3.  Benign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent Relatives.

Authors:  Jackie E Mahar; Leila Nicholson; John-Sebastian Eden; Sebastián Duchêne; Peter J Kerr; Janine Duckworth; Vernon K Ward; Edward C Holmes; Tanja Strive
Journal:  J Virol       Date:  2016-09-29       Impact factor: 5.103

4.  An in vivo system for directed experimental evolution of rabbit haemorrhagic disease virus.

Authors:  Robyn N Hall; Lorenzo Capucci; Markus Matthaei; Simona Esposito; Peter J Kerr; Michael Frese; Tanja Strive
Journal:  PLoS One       Date:  2017-03-13       Impact factor: 3.240

5.  Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles.

Authors:  Jacob F Kocher; Lisa C Lindesmith; Kari Debbink; Anne Beall; Michael L Mallory; Boyd L Yount; Rachel L Graham; Jeremy Huynh; J Edward Gates; Eric F Donaldson; Ralph S Baric
Journal:  mBio       Date:  2018-05-22       Impact factor: 7.867

6.  Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group.

Authors:  Ana M Lopes; Diogo Silvério; Maria J Magalhães; Helena Areal; Paulo C Alves; Pedro J Esteves; Joana Abrantes
Journal:  Sci Rep       Date:  2017-10-19       Impact factor: 4.379

7.  Retrospective Analysis Shows That Most RHDV GI.1 Strains Circulating Since the Late 1990s in France and Sweden Were Recombinant GI.3P-GI.1d Strains.

Authors:  Joana Abrantes; Ana M Lopes; Evelyne Lemaitre; Harri Ahola; Fereshteh Banihashem; Clément Droillard; Stéphane Marchandeau; Pedro J Esteves; Aleksija Neimanis; Ghislaine Le Gall-Reculé
Journal:  Genes (Basel)       Date:  2020-08-09       Impact factor: 4.096

  7 in total

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