Literature DB >> 26376228

Prognostic significance of NPM1 mutation-modulated microRNA-mRNA regulation in acute myeloid leukemia.

Y-C Chiu1,2, M-H Tsai3,4,5,6, W-C Chou7,8, Y-C Liu1, Y-Y Kuo7, H-A Hou8, T-P Lu9, L-C Lai4,10, Y Chen2,11, H-F Tien8, E Y Chuang1,4,5.   

Abstract

Distinct microRNA (miRNA) and mRNA signatures were reported in nucleophosmin (NPM1)-mutated acute myeloid leukemia (AML). However, it remains unknown whether the mutation participates in the dynamic interaction between miRNA and mRNA. In this study, we aimed to investigate the role of NPM1 mutation in modulating miRNA-mRNA regulation (MMR). From the sample-paired miRNA/mRNA microarrays of 181 de novo AML patients, we found that MMR was dynamic and could be affected by NPM1 mutation. By a systematic framework, we identified 493 NPM1 mutation-modulated MMR pairs, where the strength of MMR was significantly attenuated in patients carrying NPM1 mutations, compared to those with wild-type NPM1. These miRNAs/mRNAs were associated with pathways implicated in cancer and known functions of NPM1 mutation. Such modulation of MMR was validated in two independent cohorts as well as in cells with different NPM1 mutant burdens. Furthermore, we showed that the regulatory strength of nine MMR pairs could predict patients' outcomes. Combining these pairs, a scoring system was proposed and shown to predict survival in discovery and validation data sets, independent of other known prognostic factors. Our study provides novel biological insights into the role of NPM1 mutation as a modulator of MMR, based on which a novel prognostic marker is proposed in AML.

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Year:  2015        PMID: 26376228     DOI: 10.1038/leu.2015.253

Source DB:  PubMed          Journal:  Leukemia        ISSN: 0887-6924            Impact factor:   11.528


  48 in total

1.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

2.  A 3-microRNA scoring system for prognostication in de novo acute myeloid leukemia patients.

Authors:  M-K Chuang; Y-C Chiu; W-C Chou; H-A Hou; E Y Chuang; H-F Tien
Journal:  Leukemia       Date:  2014-11-27       Impact factor: 11.528

3.  Mutant nucleophosmin (NPM1) predicts favorable prognosis in younger adults with acute myeloid leukemia and normal cytogenetics: interaction with other gene mutations.

Authors:  Konstanze Döhner; Richard F Schlenk; Marianne Habdank; Claudia Scholl; Frank G Rücker; Andrea Corbacioglu; Lars Bullinger; Stefan Fröhling; Hartmut Döhner
Journal:  Blood       Date:  2005-07-28       Impact factor: 22.113

4.  Prevalence and prognostic impact of NPM1 mutations in 1485 adult patients with acute myeloid leukemia (AML).

Authors:  Christian Thiede; Sina Koch; Eva Creutzig; Christine Steudel; Thomas Illmer; Markus Schaich; Gerhard Ehninger
Journal:  Blood       Date:  2006-02-02       Impact factor: 22.113

5.  Transformation from committed progenitor to leukaemia stem cell initiated by MLL-AF9.

Authors:  Andrei V Krivtsov; David Twomey; Zhaohui Feng; Matthew C Stubbs; Yingzi Wang; Joerg Faber; Jason E Levine; Jing Wang; William C Hahn; D Gary Gilliland; Todd R Golub; Scott A Armstrong
Journal:  Nature       Date:  2006-07-16       Impact factor: 49.962

6.  Polymorphisms in multidrug resistance-associated protein gene 4 is associated with outcome in childhood acute lymphoblastic leukemia.

Authors:  Marc Ansari; Géraldine Sauty; Malgorzata Labuda; Vincent Gagné; Caroline Laverdière; Albert Moghrabi; Daniel Sinnett; Maja Krajinovic
Journal:  Blood       Date:  2009-06-10       Impact factor: 22.113

Review 7.  Cooperating gene mutations in acute myeloid leukemia: a review of the literature.

Authors:  A Renneville; C Roumier; V Biggio; O Nibourel; N Boissel; P Fenaux; C Preudhomme
Journal:  Leukemia       Date:  2008-02-21       Impact factor: 11.528

8.  Distinctive microRNA signature of acute myeloid leukemia bearing cytoplasmic mutated nucleophosmin.

Authors:  Ramiro Garzon; Michela Garofalo; Maria Paola Martelli; Roger Briesewitz; Lisheng Wang; Cecilia Fernandez-Cymering; Stefano Volinia; Chang-Gong Liu; Susanne Schnittger; Torsten Haferlach; Arcangelo Liso; Daniela Diverio; Marco Mancini; Giovanna Meloni; Robin Foa; Massimo F Martelli; Cristina Mecucci; Carlo M Croce; Brunangelo Falini
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-28       Impact factor: 11.205

9.  The database of experimentally supported targets: a functional update of TarBase.

Authors:  Giorgos L Papadopoulos; Martin Reczko; Victor A Simossis; Praveen Sethupathy; Artemis G Hatzigeorgiou
Journal:  Nucleic Acids Res       Date:  2008-10-27       Impact factor: 16.971

10.  Accurate microRNA target prediction correlates with protein repression levels.

Authors:  Manolis Maragkakis; Panagiotis Alexiou; Giorgio L Papadopoulos; Martin Reczko; Theodore Dalamagas; George Giannopoulos; George Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A Simossis; Praveen Sethupathy; Thanasis Vergoulis; Nectarios Koziris; Timos Sellis; Panagiotis Tsanakas; Artemis G Hatzigeorgiou
Journal:  BMC Bioinformatics       Date:  2009-09-18       Impact factor: 3.169

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  14 in total

Review 1.  MicroRNAs and acute myeloid leukemia: therapeutic implications and emerging concepts.

Authors:  Jared A Wallace; Ryan M O'Connell
Journal:  Blood       Date:  2017-07-27       Impact factor: 22.113

2.  Discovery of cancer common and specific driver gene sets.

Authors:  Junhua Zhang; Shihua Zhang
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

3.  High expression of MAP7 predicts adverse prognosis in young patients with cytogenetically normal acute myeloid leukemia.

Authors:  Lin Fu; Huaping Fu; Lei Zhou; Keman Xu; Yifan Pang; Kai Hu; Jing Wang; Lei Tian; Yuanyuan Liu; Jijun Wang; Hongmei Jing; Wenrong Huang; Xiaoyan Ke; Jinlong Shi
Journal:  Sci Rep       Date:  2016-09-30       Impact factor: 4.379

Review 4.  Therapeutic Resistance in Acute Myeloid Leukemia: The Role of Non-Coding RNAs.

Authors:  Armin Zebisch; Stefan Hatzl; Martin Pichler; Albert Wölfler; Heinz Sill
Journal:  Int J Mol Sci       Date:  2016-12-10       Impact factor: 5.923

5.  High expression of dedicator of cytokinesis 1 (DOCK1) confers poor prognosis in acute myeloid leukemia.

Authors:  Sze-Hwei Lee; Yu-Chiao Chiu; Yi-Hung Li; Chien-Chin Lin; Hsin-An Hou; Wen-Chien Chou; Hwei-Fang Tien
Journal:  Oncotarget       Date:  2017-07-31

6.  The distinct biological implications of Asxl1 mutation and its roles in leukemogenesis revealed by a knock-in mouse model.

Authors:  Yueh-Chwen Hsu; Yu-Chiao Chiu; Chien-Chin Lin; Yuan-Yeh Kuo; Hsin-An Hou; Yi-Shiuan Tzeng; Chein-Jun Kao; Po-Han Chuang; Mei-Hsuan Tseng; Tzu-Hung Hsiao; Wen-Chien Chou; Hwei-Fang Tien
Journal:  J Hematol Oncol       Date:  2017-07-11       Impact factor: 17.388

7.  Higher HOPX expression is associated with distinct clinical and biological features and predicts poor prognosis in de novo acute myeloid leukemia.

Authors:  Chien-Chin Lin; Yueh-Chwen Hsu; Yi-Hung Li; Yuan-Yeh Kuo; Hsin-An Hou; Keng-Hsueh Lan; Tsung-Chih Chen; Yi-Shiuan Tzeng; Yi-Yi Kuo; Chein-Jun Kao; Po-Han Chuang; Mei-Hsuan Tseng; Yu-Chiao Chiu; Wen-Chien Chou; Hwei-Fang Tien
Journal:  Haematologica       Date:  2017-03-24       Impact factor: 9.941

8.  Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.

Authors:  Yu-Chiao Chiu; Li-Ju Wang; Tzu-Pin Lu; Tzu-Hung Hsiao; Eric Y Chuang; Yidong Chen
Journal:  BMC Bioinformatics       Date:  2017-02-28       Impact factor: 3.169

9.  Identifying Cancer Specific Driver Modules Using a Network-Based Method.

Authors:  Feng Li; Lin Gao; Peizhuo Wang; Yuxuan Hu
Journal:  Molecules       Date:  2018-05-08       Impact factor: 4.411

10.  The human nucleophosmin 1 mutation A inhibits myeloid differentiation of leukemia cells by modulating miR-10b.

Authors:  Qin Zou; Shi Tan; Zailin Yang; Juan Wang; Jingrong Xian; Shuaishuai Zhang; Hongjun Jin; Liyuan Yang; Lu Wang; Ling Zhang
Journal:  Oncotarget       Date:  2016-11-01
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