Literature DB >> 26370383

Complete chloroplast genome sequence of Fritillaria unibracteata var. wabuensis based on SMRT Sequencing Technology.

Ying Li1, Qiushi Li1, Xiwen Li2, Jingyuan Song1, Chao Sun1.   

Abstract

Fritillaria unibracteata var. wabuensis is an important medicinal plant used for the treatment of cough symptoms related to the respiratory system. The chloroplast genome of F. unibracteata var. wabuensis (GenBank accession no. KF769142) was assembled using the PacBio RS platform (Pacific Biosciences, Beverly, MA) as a circle sequence with 151 009 bp. The assembled genome contains 133 genes, including 88 protein-coding, 37 tRNA, and eight rRNA genes. This genome sequence will provide important resource for further studies on the evolution of Fritillaria genus and molecular identification of Fritillaria herbs and their adulterants. This work suggests that PacBio RS is a powerful tool to sequence and assemble chloroplast genomes.

Entities:  

Keywords:  Chloroplast genome; Fritillaria unibracteata var. wabuensis; single-molecule real-time (SMRT) technology

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Year:  2015        PMID: 26370383     DOI: 10.3109/19401736.2015.1079892

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  4 in total

1.  Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316.

Authors:  Jing Guo; Xueping Jing; Wen-Lei Peng; Qiyu Nie; Yile Zhai; Zongze Shao; Longyu Zheng; Minmin Cai; Guangyu Li; Huaiyu Zuo; Zhitao Zhang; Rui-Ru Wang; Dian Huang; Wanli Cheng; Ziniu Yu; Ling-Ling Chen; Jibin Zhang
Journal:  Sci Rep       Date:  2016-07-07       Impact factor: 4.379

2.  Chloroplast genomic resources for phylogeny and DNA barcoding: a case study on Fritillaria.

Authors:  Yu Bi; Ming-Fang Zhang; Jing Xue; Ran Dong; Yun-Peng Du; Xiu-Hai Zhang
Journal:  Sci Rep       Date:  2018-01-19       Impact factor: 4.379

3.  The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species.

Authors:  Inkyu Park; Wook Jin Kim; Sang-Min Yeo; Goya Choi; Young-Min Kang; Renzhe Piao; Byeong Cheol Moon
Journal:  Molecules       Date:  2017-06-13       Impact factor: 4.411

4.  Phylogenetic analysis of Fritillaria cirrhosa D. Don and its closely related species based on complete chloroplast genomes.

Authors:  Qi Chen; Xiaobo Wu; Dequan Zhang
Journal:  PeerJ       Date:  2019-08-21       Impact factor: 2.984

  4 in total

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