Literature DB >> 26369927

De novo assembly of the mitochondrial genome of Ulva fasciata Delile (Ulvophyceae, Chlorophyta), a distromatic blade-forming green macroalga.

James Theodore Melton1, Juan Manuel Lopez-Bautista1.   

Abstract

We present the 61 614 bp circular-mapping mitochondrial genome of Ulva fasciata. Fifty-eight genes were identified including 29 protein-coding genes, 27 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. Four ORFs from the Ulva sp. UNA00071828 mitogenome were conserved compared to the mitogenome of Ulva fasciata. The ∼10 000 bp size difference was mostly due to fewer introns found in U. fasciata mtDNA (4) as compared with the Ulva sp. UNA00071828 mtDNA (10). Introns were annotated in cox1 (3) and nad3 (1). The AT content was similar to Ulva sp. UNA00071828 mtDNA at 67.5%. A phylogenomic anaylsis of 28 chlorophytes and 17 protein-coding genes (14 115 bp alignment) showed that U. fasciata clusters closely with other members of the Ulvophyceae (Ulva sp. UNA00071828, Pseudendoclonium akinetum, and Oltmannsiellopsis viridis). This analysis did not recover a monophyletic Ulvophyceae, however, the Trebouxiophyceae and Chlorophyceae were supported as monophyletic groups.

Entities:  

Keywords:  Green algae; Ulva; Ulvaceae; Ulvales; marine; mitochondrion

Mesh:

Substances:

Year:  2015        PMID: 26369927     DOI: 10.3109/19401736.2015.1082095

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  5 in total

1.  Characterization of complete chloroplast genome of Ulva torta (Mertens) Trevisan, 1841.

Authors:  Qinlin Wen; Weiming Yang; Jingshi Li; Jinlin Liu; Shuang Zhao; Song Gao; Jianheng Zhang; Peimin He
Journal:  Mitochondrial DNA B Resour       Date:  2022-06-14       Impact factor: 0.610

2.  Comparative study on mitogenomes of green tide algae.

Authors:  Chuner Cai; Feng Liu; Ting Jiang; Lingke Wang; Rui Jia; Lingjie Zhou; Kai Gu; Jianfeng Ren; Peimin He
Journal:  Genetica       Date:  2018-10-30       Impact factor: 1.082

3.  Mitochondrial and chloroplast genome sequences of Ulva ohnoi, a green-tide-forming macroalga in the Southern coastal regions of Japan.

Authors:  Shigekatsu Suzuki; Haruyo Yamaguchi; Masanori Hiraoka; Masanobu Kawachi
Journal:  Mitochondrial DNA B Resour       Date:  2018-07-10       Impact factor: 0.658

4.  Mitochondrion-to-Chloroplast DNA Transfers and Intragenomic Proliferation of Chloroplast Group II Introns in Gloeotilopsis Green Algae (Ulotrichales, Ulvophyceae).

Authors:  Monique Turmel; Christian Otis; Claude Lemieux
Journal:  Genome Biol Evol       Date:  2016-09-19       Impact factor: 3.416

5.  Foliose Ulva Species Show Considerable Inter-Specific Genetic Diversity, Low Intra-Specific Genetic Variation, and the Rare Occurrence of Inter-Specific Hybrids in the Wild.

Authors:  Antoine Fort; Marcus McHale; Kevin Cascella; Philippe Potin; Björn Usadel; Michael D Guiry; Ronan Sulpice
Journal:  J Phycol       Date:  2020-11-24       Impact factor: 2.923

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.