Literature DB >> 26365351

ATP selection in a random peptide library consisting of prebiotic amino acids.

Shou-Kai Kang1, Bai-Xue Chen1, Tian Tian1, Xi-Shuai Jia1, Xin-Yi Chu1, Rong Liu1, Peng-Fei Dong1, Qing-Yong Yang1, Hong-Yu Zhang2.   

Abstract

Based upon many theoretical findings on protein evolution, we proposed a ligand-selection model for the origin of proteins, in which the most ancient proteins originated from ATP selection in a pool of random peptides. To test this ligand-selection model, we constructed a random peptide library consisting of 15 types of prebiotic amino acids and then used cDNA display to perform six rounds of in vitro selection with ATP. By means of next-generation sequencing, the most prevalent sequence was defined. Biochemical and biophysical characterization of the selected peptide showed that it was stable and foldable and had ATP-hydrolysis activity as well.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  In vitro selection; Next-generation sequencing; Origin of proteins; Protein evolution; Structure and function; cDNA display

Mesh:

Substances:

Year:  2015        PMID: 26365351     DOI: 10.1016/j.bbrc.2015.09.038

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  4 in total

Review 1.  The Legend of ATP: From Origin of Life to Precision Medicine.

Authors:  Xin-Yi Chu; Yuan-Yuan Xu; Xin-Yu Tong; Gang Wang; Hong-Yu Zhang
Journal:  Metabolites       Date:  2022-05-20

Review 2.  De novo proteins from random sequences through in vitro evolution.

Authors:  Cher Ling Tong; Kun-Hwa Lee; Burckhard Seelig
Journal:  Curr Opin Struct Biol       Date:  2021-01-28       Impact factor: 7.786

3.  The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases.

Authors:  Florian Kaiser; Sarah Krautwurst; Sebastian Salentin; V Joachim Haupt; Christoph Leberecht; Sebastian Bittrich; Dirk Labudde; Michael Schroeder
Journal:  Sci Rep       Date:  2020-07-28       Impact factor: 4.379

4.  Photocrosslinking of cDNA Display Molecules with Their Target Proteins as a New Strategy for Peptide Selection.

Authors:  Takuya Terai; Tomoyuki Koike; Naoto Nemoto
Journal:  Molecules       Date:  2020-03-24       Impact factor: 4.411

  4 in total

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