| Literature DB >> 26364272 |
Jian Zhou1, Zhao Liu1, Jia Yu1, Xin Han1, Songhua Fan1, Weihua Shao1, Jianjun Chen1, Rui Qiao1, Peng Xie2.
Abstract
BACKGROUND: While stressful events are recognized as an important cause of major depressive disorder, some individuals exposed to life stressors maintain normal psychological functioning. The molecular mechanism(s) underlying this phenomenon remain unclear. Abnormal transmission and plasticity of hippocampal synapses have been implied to play a key role in the pathoetiology of major depressive disorder.Entities:
Keywords: chronic mild stress; hippocampus; major depressive disorder; proteomics; synapse
Mesh:
Substances:
Year: 2015 PMID: 26364272 PMCID: PMC4772275 DOI: 10.1093/ijnp/pyv100
Source DB: PubMed Journal: Int J Neuropsychopharmacol ISSN: 1461-1457 Impact factor: 5.176
Figure 1.Chronic mild stress (CMS) schedule and sucrose preference test. (a) Time and length of stressors used in the CMS procedure. (b) Sucrose preference during the CMS protocol. By the third week of CMS procedure, sucrose preference was significantly decreased in the susceptible rats compared with the control and unsusceptible rats (n=19). This relationship continued into the fourth week of CMS as well. ***P<.001.
Figure 2.Results of behavioral testing. Comparisons of (a) total distance moved, (b) number of rearings, (c) time spent in the central sector of the open-field test (OFT), and (d) immobility times in the forced swimming test (FST) between the control, susceptible, and unsusceptible rats are shown. *P<.05, **P<.01.
Figure 3.Outline of the sample preparation and isobaric tag for relative and absolute quantitation (iTRAQ) labeling procedures. Rat hippocampi were dissected from the 3 groups (control, susceptible, and unsusceptible). The tissue was subject to biochemical fractionation to obtain total homogenate (Hom), synaptosome (Syn), and synaptic vesicular (Ves) fractions. iTRAQ labeling was performed on the synaptic junction preparation. Two sets of biological replicate samples were analyzed using 4-plex iTRAQ reagents. Peptides from controls were labeled with iTRAQ reagent having 115 and 116 reporters, peptides from the susceptible group were labeled with iTRAQ reagent having 116 and 114 reporters, and peptides from the unsusceptible group were labeled with iTRAQ reagent having 114 and 115 reporters. After labeling, peptides from all 6 samples were separately combined and fractionated by strong cation exchange (SCX) chromatography. Each fraction was then analyzed by LC-MS/MS on a Triple TOF 5600 mass spectrometer.
Figure 4.Western-blot analysis of the 4 fractions (Hom, Syn, Ves, and synaptic junction) obtained by biochemical fractionation. The fractions were analyzed using antibodies against synaptophysin (synaptic vesicle marker), Stx1a (synaptic active zone marker), and PSD95 (postsynaptic density marker).
Comparison of the Two Sets of Biological Replicate Samples
| Summary Data | Set 1 | Set 2 |
|---|---|---|
| Total number of protein IDs | 3691 | 3491 |
| Number of unique proteins from each set | 1071 | 871 |
| Combined distinct protein IDs (total/overlap) from the 2 sets | 4562/2620 | |
| Reproducibility of protein IDs in the 2 sets | 71.0% | 75.1% |
| Total proteins with iTRAQ ratio | 3625 (98.2%) | 3037 (87.0%) |
| Unique proteins with iTRAQ ratio from each set | 1281 | 693 |
| Combined distinct protein IDs with iTRAQ ratio | 4318/2344 | |
| Reproducibility of protein IDs with iTRAQ ratio in 2 sets | 64.7% | 77.2% |
| Total peptides/unique peptides | 125708/26528 (21.1%) | 106165/24160 (22.8%) |
| Unique peptides identified in only 1 set | 10519 | 8151 |
| Combined unique peptides (total/overlap) from the 2 sets | 34679/16009 | |
Abbreviation: iTRAQ, isobaric tag for relative and absolute quantitation.
The total number of protein IDs indicates the total protein IDs identified based on at least one unique peptide in the 2 sets of biological replicate samples.
The number of unique proteins from each set denotes the number of protein IDs exclusively identified from each of the 2 sets.
Figure 5.MS/MS spectra of peptides with their reporter ions for representative differentially expressed proteins in datasets 1 and 2. (a) MS/MS spectrum of a representative peptide (ASTAAPVASPAAPSPGSSGGGGFFSSLSNAVK) from Syn1 and corresponding spectrum showing relative intensity of reporter ions. (b) MS/MS spectrum of a representative peptide (DEPHTDWAK) from Syn2 and corresponding spectrum of reporter ions.
Figure 6.Localization analysis of differentially expressed proteins. (a) Pie chart showing the distribution of the differentially expressed proteins across the cellular compartments based on gene ontology (GO) annotations from the UniProt/DAVID database. (b) Venn diagram showing the detailed synaptic localization of the differentially expressed membrane-associated proteins based on the SynaptomeDB search.
Differential Membrane Proteins Identified from the Hippocampal Synaptic Junctions of Susceptible and Unsusceptible Rats
| Uniprot Accession | Protein Name | Gene Name | Unique Peptide | Average Fold Change | Function | ||
|---|---|---|---|---|---|---|---|
| Set1 | Set2 | Susceptible | Unsusceptible | ||||
| P61765 | Syntaxin-binding protein 1 | Stxbp1 | 69 | 64 | ― | 1.43 | Membrane trafficking |
| P09951 | Synapsin-1 | Syn1 | 97 | 89 | ― | 1.86 | Membrane trafficking |
| G3V733 | Synapsin II, isoform CRA_a | Syn2 | 41 | 45 | ― | 1.96 | Membrane trafficking |
| F1M7V4 | Protein piccolo | Pclo | 54 | 61 | ― | 1.39 | Membrane trafficking |
| B0BMW0 | RAB14, member RAS oncogene family | Rab14 | 7 | 6 | ― | 1.34 | Membrane trafficking |
| Q641Z6 | EH domain-containing protein 1 | Ehd1 | 21 | 26 | 1.39 | 1.55 | Membrane trafficking |
| Q812E9 | Neuronal membrane glycoprotein M6-a | Gpm6a | 5 | 7 | 2.03 | 1.58 | Membrane trafficking |
| Q6AXT5 | Ras-related protein Rab-21 | Rab21 | 6 | 7 | 2.53 | ― | Membrane trafficking |
| O54923 | Exocyst complex component 6 | Exoc6 | 4 | 7 | ― | 0.79 | Membrane trafficking |
| P54921 | Alpha-soluble NSF attachment protein | Napa | 15 | 21 | 0.69 | 0.75 | Membrane trafficking |
| P63012 | Ras-related protein Rab-3A | Rab3a | 7 | 8 | 0.56 | 0.43 | Membrane trafficking |
| G3V6D3 | ATP synthase subunit beta | Atp5b | 46 | 56 | 0.59 | 1.76 | Transporter |
| P62815 | V-type proton ATPase subunit B, brain isoform | Atp6v1b2 | 40 | 35 | ― | 1.57 | Transporter |
| G3V7L8 | ATPase, H+ transporting, V1 subunit E isoform 1, isoform CRA_a | Atp6v1e1 | 20 | 17 | ― | 1.55 | Transporter |
| D4A133 | Protein Atp6v1a | Atp6v1a | 41 | 39 | ― | 1.22 | Transporter |
| P31596 | Excitatory amino acid transporter 2 | Slc1a2 | 12 | 15 | 0.72 | ― | Transporter |
| Q6P6T0 | Sideroflexin 3 | Sfxn3 | 4 | 7 | 0.60 | ― | Transporter |
| P07340 | Sodium/potassium-transporting ATPase subunit beta-1 | Atp1b1 | 10 | 11 | 0.56 | ― | Transporter |
| P15999 | ATP synthase subunit alpha, mitochondrial | Atp5a1 | 39 | 52 | 0.70 | ― | Transporter |
| P46462 | Transitional endoplasmic reticulum ATPase | Vcp | 30 | 30 | 0.52 | ― | Transporter |
| G3V7Q0 | Protein Dennd5a | Dennd5a | 3 | 4 | ― | 0.66 | Transporter |
| G3V8Q1 | Coatomer protein complex, subunit epsilon (Predicted), isoform CRA_c | Cope | 5 | 7 | ― | 0.65 | Transporter |
| B0BNJ1 | LOC683667 protein | Sri | 5 | 4 | 0.58 | 0.68 | Transporter |
| Q6P9Y4 | ADP/ATP translocase 1 | Slc25a4 | 10 | 11 | 0.74 | 0.52 | Transporter |
| F1LXF1 | Protein Bcr (Fragment) | Bcr | 13 | 8 | 1.42 | 2.17 | Signaling |
| Q8K3M6 | ERC protein 2 | Erc2 | 17 | 27 | ― | 1.55 | Signaling |
| Q9Z1T4 | Connector enhancer of kinase suppressor of ras 2 | Cnksr2 | 10 | 13 | ― | 1.28 | Signaling |
| Q66HA6 | ADP-ribosylation factor-like protein 8B | Arl8b | 4 | 3 | ― | 1.60 | Signaling |
| Q6RUV5 | Ras-related C3 botulinum toxin substrate 1 | Rac1 | 11 | 16 | 1.53 | ― | Signaling |
| P82471 | Guanine nucleotide-binding protein G(q) subunit alpha | Gnaq | 4 | 3 | 1.21 | ― | Signaling |
| P11730 | Calcium/calmodulin-dependent protein kinase type II subunit gamma | Camk2g | 10 | 12 | 1.46 | ― | Signaling |
| Q6DUV1 | Protein kinase C epsilon | Prkce | 19 | 18 | 0.64 | ― | Signaling |
| P61983 | 14-3-3 protein gamma | Ywhag | 10 | 9 | 0.62 | ― | Signaling |
| P13233 | 2’,3’-cyclic-nucleotide 3’-phosphodiesterase | Cnp | 31 | 29 | 0.77 | ― | Signaling |
| B5DFC4 | Protein kinase C | Prkca | 10 | 6 | ― | 0.60 | Signaling |
| Q9QXK0 | Signal transducer and activator of transcription 1 | Stat1 | 4 | 4 | ― | 0.70 | Signaling |
| P47942 | Dihydropyrimidinase-related protein 2 | Dpysl2 | 24 | 27 | 0.59 | 0.71 | Signaling |
| P62260 | 14-3-3 protein epsilon | Ywhae | 22 | 21 | 0.49 | 0.72 | Signaling |
| P63102 | 14-3-3 protein zeta/delta | Ywhaz | 12 | 14 | 0.51 | 0.65 | Signaling |
| Q8VIN2 | Annexin | Anxa7 | 6 | 7 | 1.76 | 1.99 | Regulatory/Chaperone |
| Q5U355 | Itfg1 protein | Itfg1 | 5 | 3 | 2.11 | 1.39 | Regulatory/Chaperone |
| O35274 | Neurabin-2 | Ppp1r9b | 22 | 23 | 1.46 | ― | Regulatory/Chaperone |
| B0K020 | CDGSH iron-sulfur domain- containing protein 1 | Cisd1 | 5 | 7 | 1.47 | ― | Regulatory/Chaperone |
| Q05175 | Brain acid soluble protein 1 | Basp1 | 16 | 13 | 0.69 | ― | Regulatory/Chaperone |
| F1LP80 | Neurosecretory protein VGF | Vgf | 5 | 4 | 0.50 | ― | Regulatory/Chaperone |
| P14669 | Annexin A3 | Anxa3 | 18 | 15 | 0.53 | ― | Regulatory/Chaperone |
| O35095 | Neurochondrin | Ncdn | 15 | 14 | 0.72 | ― | Regulatory/Chaperone |
| O35796 | Complement component 1 Q subcomponent-binding protein, mitochondrial | C1qbp | 8 | 8 | 0.74 | ― | Regulatory/Chaperone |
| Q66HD0 | Endoplasmin | Hsp90b1 | 21 | 16 | 0.55 | ― | Regulatory/Chaperone |
| Q6P502 | T-complex protein 1 subunit gamma | Cct3 | 23 | 21 | 0.73 | ― | Regulatory/Chaperone |
| Q9ERS3 | Voltage-dependent calcium channel subunit alpha-2/delta-1 | Cacna2d1 | 31 | 29 | 1.50 | 1.98 | Receptor/Channel |
| O88871 | Gamma-aminobutyric acid type B receptor subunit 2 | Gabbr2 | 14 | 8 | 1.68 | ― | Receptor/Channel |
| Q9Z2L0 | Voltage-dependent anion- selective channel protein 1 | Vdac1 | 49 | 54 | 1.45 | ― | Receptor/Channel |
| D4A3H5 | Protein Clcn6 | Clcn6 | 10 | 10 | 1.38 | ― | Receptor/Channel |
| Q63622 | Disks large homolog 2 | Dlg2 | 36 | 30 | 1.36 | 1.60 | Scaffolding/Clustering |
| Q62765 | Neuroligin-1 | Nlgn1 | 5 | 3 | ― | 1.51 | Scaffolding/Clustering |
| Q8R490 | Cadherin 13 | Cdh13 | 13 | 11 | ― | 1.51 | Cell adhesion |
| Q9Z2S9 | Flotillin-2 | Flot2 | 21 | 20 | ― | 1.53 | Cell adhesion |
| D4A8Y0 | Protein Cldn12 | Cldn12 | 3 | 3 | ― | 1.25 | Cell adhesion |
| D4A435 | Protein Icam5 | Icam5 | 27 | 27 | 0.66 | 0.54 | Cell adhesion |
| P30427 | Plectin | Plec | 149 | 145 | 2.04 | 2.01 | Cytoskeletal |
| F1LSL8 | Protein Sptbn4 | Sptbn4 | 56 | 43 | 1.56 | 1.75 | Cytoskeletal |
| A2VCW8 | Septin 7 | Sept7 | 33 | 29 | ― | 1.46 | Cytoskeletal |
| Q07266 | Drebrin | Dbn1 | 23 | 18 | 1.55 | ― | Cytoskeletal |
| F1LSW1 | Unconventional myosin-Ib | Myo1b | 5 | 5 | 1.26 | ― | Cytoskeletal |
| Q91ZN1 | Coronin-1A | Coro1a | 10 | 7 | 1.36 | ― | Cytoskeletal |
| Q561S0 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial | Ndufa10 | 17 | 12 | 2.37 | 5.78 | Mitochondrial |
| P04636 | Malate dehydrogenase, mitochondrial | Mdh2 | 17 | 17 | 1.38 | 2.15 | Mitochondrial |
| Q68FY0 | Cytochrome b-c1 complex subunit 1, mitochondrial | Uqcrc1 | 24 | 20 | 1.37 | 1.99 | Mitochondrial |
| P20788 | Cytochrome b-c1 complex subunit Rieske, mitochondrial | Uqcrfs1 | 7 | 10 | ― | 2.40 | Mitochondrial |
| P11240 | Cytochrome c oxidase subunit 5A, mitochondrial | Cox5a | 15 | 17 | ― | 1.67 | Mitochondrial |
| B2RYS2 | Cytochrome b-c1 complex subunit 7 | Uqcrb | 7 | 10 | ― | 1.55 | Mitochondrial |
| P11951 | Cytochrome c oxidase subunit 6C-2 | Cox6c2 | 5 | 6 | ― | 1.61 | Mitochondrial |
| Q6P6R2 | Dihydrolipoyl dehydrogenase, mitochondrial | Dld | 33 | 30 | ― | 1.41 | Mitochondrial |
| Q5XI78 | 2-oxoglutarate dehydrogenase, mitochondrial | Ogdh | 48 | 49 | 0.65 | ― | Mitochondrial |
| P10860 | Glutamate dehydrogenase 1, mitochondrial | Glud1 | 36 | 45 | 0.57 | ― | Mitochondrial |
| P08461 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial | Dlat | 23 | 19 | 0.55 | 0.64 | Mitochondrial |
| P49432 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | Pdhb | 19 | 19 | 0.53 | 0.54 | Mitochondrial |
| Q5HZW3 | Aspartate beta-hydroxylase domain-containing protein 2 | Asphd2 | 4 | 3 | 1.60 | 2.25 | Metabolic |
| G3V9W6 | Aldehyde dehydrogenase | Aldh3a2 | 4 | 6 | 1.65 | 1.36 | Metabolic |
| Q5XI31 | GPI transamidase component PIG-S | Pigs | 4 | 3 | 1.23 | ― | Metabolic |
| Q66HL0 | 5′ nucleotidase, ecto | Nt5e | 8 | 8 | 1.47 | ― | Metabolic |
| D3ZPU3 | Estradiol 17-beta-dehydrogenase 12 | Hsd17b12 | 8 | 5 | 1.57 | ― | Metabolic |
| B5DEH2 | Erlin-2 | Erlin2 | 7 | 5 | 1.33 | ― | Metabolic |
| P07335 | Creatine kinase B-type | Ckb | 15 | 17 | 0.35 | ― | Metabolic |
| P04797 | Glyceraldehyde-3-phosphate dehydrogenase | Gapdh | 36 | 41 | 0.51 | ― | Metabolic |
| P12785 | Fatty acid synthase | Fasn | 50 | 44 | 0.71 | 0.67 | Metabolic |
| Q4FZZ4 | Pyruvate dehydrogenase (Lipoamide) alpha 1 | Pdha1 | 19 | 17 | 0.58 | 0.64 | Metabolic |
| I7FKL4 | Myelin basic protein transcript variant 1 | Mbp | 22 | 21 | ― | 1.46 | Other |
―, not significantly changed.
Figure 7.Differentially expressed membrane proteins from hippocampal synaptic junctions. (a) Venn diagrams showing the number of uniquely regulated proteins in the susceptible and unsusceptible groups as compared to controls, with the overlap depicting proteins that were identically regulated under both conditions. Upregulated (red) and downregulated (blue) proteins are shown separately. (b) Pie chart showing classification of these differentially expressed membrane proteins identified from susceptible and unsusceptible groups. The number of membrane proteins in each category is indicated. (c) Upregulated and downregulated proteins are indicated by red and blue color codes, respectively, with the color intensity signifying the expression level as noted in the key bar (top right). Histograms denote the expression trend of the representative proteins.
Figure 8.Analysis of synaptic junction proteins involved in membrane trafficking after CMS. (a) STRING interaction network of the focus trafficking proteins. Four additional interplay proteins were added to this network. An interaction map was generated using default settings (ie, a high confidence level of 0.7 and 7 linkage criteria: neighborhood, gene fusion, cooccurrence, coexpression, experimental evidence, existing database(s), and text mining). (b) Membrane-associated GTP-bound Rab3a and Munc18-1, through co-regulating syntaxin-1/SNAP25/VAMP2 assembly, appears to facilitate soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE)-mediated membrane fusion and resulting neurotransmitter release in the hippocampal presynaptic active zones of unsusceptible rats.
Figure 9.Immunoblotting of select presynaptic membrane proteins. Immunoblotting of the (a) synaptic junction, (b) Ves, (c) Syn, and (d) total Hom preparations from hippocampi of the control, susceptible, and unsusceptible groups. Rab3a, Stxbp1 (also known as Munc18-1), Syn1, Syt1, Stx1a, Stx1b, SNAP25, and VAMP2 were detected with their respective antibodies (left). Each blot is representative of triplicate findings, and the protein load was checked by Coomassie-stained gels. The bands for the same proteins were analyzed by densitometry using Quality One software (right). The X axis shows the relative intensity. All data were derived from three independent experiments and are shown as mean±SE. *P<.05, **P<.01. C, control; U, unsusceptible; S, susceptible.