Literature DB >> 26359779

The complete chloroplast genome of Cupressus gigantea, an endemic conifer species to Qinghai-Tibetan Plateau.

Huie Li1, Qiqiang Guo1,2,3, Weilie Zheng1,2,3.   

Abstract

The complete chloroplast genome of the wild Cupressus gigantea (Cupressaceae) is determined in this study. The circular genome is 128 244 bp in length with 115 single copy genes and two duplicated genes (trnI-CAU and trnQ-UUG). This genome contains 82 protein-coding genes, four ribosomal RNA genes and 31 transfer RNA genes. In these genes, eight genes (atpF, rpoC1, ndhA, ndhB, petB, petD, rpl16 and rpl2) harbor a single intron and two genes (rps12 and ycf3) harbor two introns. This genome does not contain canonical IRs, and the overall GC content is 34.7%. A maximum parsimony phylogenetic analysis revealed that C. gigantea and C. sempervirens are more closely related.

Entities:  

Keywords:  Chloroplast genome; Cupressaceae; Cupressus gigantea; phylogeny

Mesh：

Substances：

Year:  2015        PMID： 26359779     DOI： 10.3109/19401736.2015.1079885

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN： 2470-1394            Impact factor:   1.514


  3 in total

1.  Genomic insights into the genotype-environment mismatch and conservation units of a Qinghai-Tibet Plateau endemic cypress under climate change.

Authors:  Heng Yang; Jialiang Li; Richard Ian Milne; Wenjing Tao; Yi Wang; Jibin Miao; Wentao Wang; Tsam Ju; Sonam Tso; Jian Luo; Kangshan Mao
Journal:  Evol Appl       Date:  2022-06-10       Impact factor: 4.929

2.  Development of high transferability cpSSR markers for individual identification and genetic investigation in Cupressaceae species.

Authors:  Li-Sha Huang; Yan-Qiang Sun; Yuqing Jin; Qiong Gao; Xian-Ge Hu; Fu-Ling Gao; Xiao-Lei Yang; Ji-Jun Zhu; Yousry A El-Kassaby; Jian-Feng Mao
Journal:  Ecol Evol       Date:  2018-04-20       Impact factor: 2.912

3.  The complete chloroplast genome of Juniperus squamata (Cupressaceae), a shrubby conifer from Asian Mountains.

Authors:  Siyu Xie; Jialiang Li; Jibin Miao; Jingjing Xu; Kangshan Mao
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-12       Impact factor: 0.658
  3 in total

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