Literature DB >> 26357146

Multivariate Data Analysis Using Persistence-Based Filtering and Topological Signatures.

B Rieck1, H Mara, H Leitte.   

Abstract

The extraction of significant structures in arbitrary high-dimensional data sets is a challenging task. Moreover, classifying data points as noise in order to reduce a data set bears special relevance for many application domains. Standard methods such as clustering serve to reduce problem complexity by providing the user with classes of similar entities. However, they usually do not highlight relations between different entities and require a stopping criterion, e.g. the number of clusters to be detected. In this paper, we present a visualization pipeline based on recent advancements in algebraic topology. More precisely, we employ methods from persistent homology that enable topological data analysis on high-dimensional data sets. Our pipeline inherently copes with noisy data and data sets of arbitrary dimensions. It extracts central structures of a data set in a hierarchical manner by using a persistence-based filtering algorithm that is theoretically well-founded. We furthermore introduce persistence rings, a novel visualization technique for a class of topological features-the persistence intervals-of large data sets. Persistence rings provide a unique topological signature of a data set, which helps in recognizing similarities. In addition, we provide interactive visualization techniques that assist the user in evaluating the parameter space of our method in order to extract relevant structures. We describe and evaluate our analysis pipeline by means of two very distinct classes of data sets: First, a class of synthetic data sets containing topological objects is employed to highlight the interaction capabilities of our method. Second, in order to affirm the utility of our technique, we analyse a class of high-dimensional real-world data sets arising from current research in cultural heritage.

Year:  2012        PMID: 26357146     DOI: 10.1109/TVCG.2012.248

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  7 in total

1.  Multidimensional persistence in biomolecular data.

Authors:  Kelin Xia; Guo-Wei Wei
Journal:  J Comput Chem       Date:  2015-05-30       Impact factor: 3.376

2.  Persistent homology analysis of protein structure, flexibility, and folding.

Authors:  Kelin Xia; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2014-06-24       Impact factor: 2.747

3.  Object-oriented Persistent Homology.

Authors:  Bao Wang; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2016-01-15       Impact factor: 3.553

4.  Multiresolution persistent homology for excessively large biomolecular datasets.

Authors:  Kelin Xia; Zhixiong Zhao; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2015-10-07       Impact factor: 3.488

5.  Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening.

Authors:  Zixuan Cang; Lin Mu; Guo-Wei Wei
Journal:  PLoS Comput Biol       Date:  2018-01-08       Impact factor: 4.475

6.  Gait Rhythm Dynamics for Neuro-Degenerative Disease Classification via Persistence Landscape- Based Topological Representation.

Authors:  Yan Yan; Kamen Ivanov; Olatunji Mumini Omisore; Tobore Igbe; Qiuhua Liu; Zedong Nie; Lei Wang
Journal:  Sensors (Basel)       Date:  2020-04-03       Impact factor: 3.576

7.  Weighted persistent homology for osmolyte molecular aggregation and hydrogen-bonding network analysis.

Authors:  D Vijay Anand; Zhenyu Meng; Kelin Xia; Yuguang Mu
Journal:  Sci Rep       Date:  2020-06-16       Impact factor: 4.379

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.