Literature DB >> 26357030

MegaMol--A Prototyping Framework for Particle-Based Visualization.

Sebastian Grottel, Michael Krone, Christoph Muller, Guido Reina, Thomas Ertl.   

Abstract

Visualization applications nowadays not only face increasingly larger datasets, but have to solve increasingly complex research questions. They often require more than a single algorithm and consequently a software solution will exceed the possibilities of simple research prototypes. Well-established systems intended for such complex visual analysis purposes have usually been designed for classical, mesh-based graphics approaches. For particle-based data, however, existing visualization frameworks are too generic - e.g. lacking possibilities for consistent low-level GPU optimization for high-performance graphics - and at the same time are too limited - e.g. by enforcing the use of structures suboptimal for some computations. Thus, we developed the system softwareMegaMol for visualization research on particle-based data. On the one hand, flexible data structures and functional module design allow for easy adaption to changing research questions, e.g. studying vapors in thermodynamics, solid material in physics, or complex functional macromolecules like proteins in biochemistry. Therefore, MegaMol is designed as a development framework. On the other hand, common functionality for data handling and advanced rendering implementations are available and beneficial for all applications. We present several case studies of work implemented using our system as well as a comparison to other freely available or open source systems.

Year:  2015        PMID: 26357030     DOI: 10.1109/TVCG.2014.2350479

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  7 in total

1.  HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data.

Authors:  Mauricio Carrillo-Tripp; Leonardo Alvarez-Rivera; Omar Israel Lara-Ramírez; Francisco Javier Becerra-Toledo; Adan Vega-Ramírez; Emmanuel Quijas-Valades; Eduardo González-Zavala; Julio Cesar González-Vázquez; Javier García-Vieyra; Nelly Beatriz Santoyo-Rivera; Sergio Victor Chapa-Vergara; Amilcar Meneses-Viveros
Journal:  J Comput Aided Mol Des       Date:  2018-08-06       Impact factor: 3.686

2.  cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets.

Authors:  Mathieu Le Muzic; Ludovic Autin; Julius Parulek; Ivan Viola
Journal:  Eurographics Workshop Vis Comput Biomed       Date:  2015

3.  High-Performance Host-Device Scheduling and Data-Transfer Minimization Techniques for Visualization of 3D Agent-Based Wound Healing Applications.

Authors:  N Seekhao; G Yu; S Yuen; J JaJa; L Mongeau; N Y K Li-Jessen
Journal:  PDPTA 19 (2019)       Date:  2019 Jul-Aug

4.  Instant Construction and Visualization of Crowded Biological Environments.

Authors:  Tobias Klein; Ludovic Autin; Barbora Kozlikova; David S Goodsell; Arthur Olson; M Eduard Groller; Ivan Viola
Journal:  IEEE Trans Vis Comput Graph       Date:  2017-08-29       Impact factor: 4.579

Review 5.  Perspectives on Structural Molecular Biology Visualization: From Past to Present.

Authors:  Arthur J Olson
Journal:  J Mol Biol       Date:  2018-07-23       Impact factor: 5.469

6.  Enabling Detailed, Biophysics-Based Skeletal Muscle Models on HPC Systems.

Authors:  Chris P Bradley; Nehzat Emamy; Thomas Ertl; Dominik Göddeke; Andreas Hessenthaler; Thomas Klotz; Aaron Krämer; Michael Krone; Benjamin Maier; Miriam Mehl; Tobias Rau; Oliver Röhrle
Journal:  Front Physiol       Date:  2018-07-12       Impact factor: 4.566

7.  Ellipsoidal Abstract and Illustrative Representations of Molecular Surfaces.

Authors:  Meng Liang; Yuhang Fu; Ruibo Gao; Qiaoqiao Wang; Junlan Nie
Journal:  Int J Mol Sci       Date:  2019-10-17       Impact factor: 5.923

  7 in total

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