Literature DB >> 26354439

Producing glucose 6-phosphate from cellulosic biomass: structural insights into levoglucosan bioconversion.

John-Paul Bacik1, Justin R Klesmith2, Timothy A Whitehead3, Laura R Jarboe4, Clifford J Unkefer5, Brian L Mark6, Ryszard Michalczyk5.   

Abstract

The most abundant carbohydrate product of cellulosic biomass pyrolysis is the anhydrosugar levoglucosan (1,6-anhydro-β-d-glucopyranose), which can be converted to glucose 6-phosphate by levoglucosan kinase (LGK). In addition to the canonical kinase phosphotransfer reaction, the conversion requires cleavage of the 1,6-anhydro ring to allow ATP-dependent phosphorylation of the sugar O6 atom. Using x-ray crystallography, we show that LGK binds two magnesium ions in the active site that are additionally coordinated with the nucleotide and water molecules to result in ideal octahedral coordination. To further verify the metal binding sites, we co-crystallized LGK in the presence of manganese instead of magnesium and solved the structure de novo using the anomalous signal from four manganese atoms in the dimeric structure. The first metal is required for catalysis, whereas our work suggests that the second is either required or significantly promotes the catalytic rate. Although the enzyme binds its sugar substrate in a similar orientation to the structurally related 1,6-anhydro-N-acetylmuramic acid kinase (AnmK), it forms markedly fewer bonding interactions with the substrate. In this orientation, the sugar is in an optimal position to couple phosphorylation with ring cleavage. We also observed a second alternate binding orientation for levoglucosan, and in these structures, ADP was found to bind with lower affinity. These combined observations provide an explanation for the high Km of LGK for levoglucosan. Greater knowledge of the factors that contribute to the catalytic efficiency of LGK can be used to improve applications of this enzyme for levoglucosan-derived biofuel production.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  anhydrosugar; biofuel; carbohydrate processing; crystal structure; hexokinase; levoglucosan; structural biology

Mesh:

Substances:

Year:  2015        PMID: 26354439      PMCID: PMC4646320          DOI: 10.1074/jbc.M115.674614

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

1.  Urinary levoglucosan levels in Austrian communities differing in agrarian quota.

Authors:  P Wallner; M Kundi; H Moshammer; S Scharf; M Schmutzer; S Weiss; P Hohenblum; H-P Hutter
Journal:  Int J Hyg Environ Health       Date:  2012-05-28       Impact factor: 5.840

2.  Conformational itinerary of Pseudomonas aeruginosa 1,6-anhydro-N-acetylmuramic acid kinase during its catalytic cycle.

Authors:  John-Paul Bacik; Marjan Tavassoli; Trushar R Patel; Sean A McKenna; David J Vocadlo; Mazdak Khajehpour; Brian L Mark
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

Review 3.  Deconstruction of lignocellulosic biomass to fuels and chemicals.

Authors:  Shishir P S Chundawat; Gregg T Beckham; Michael E Himmel; Bruce E Dale
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

4.  Tris Is a Competitive Inhibitor of K+ Activation of the Vacuolar H+-Pumping Pyrophosphatase.

Authors:  R. Gordon-Weeks; V. D. Koren'kov; S. H. Steele; R. A. Leigh
Journal:  Plant Physiol       Date:  1997-07       Impact factor: 8.340

5.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

6.  Glucose-phosphorylating enzymes of Candida yeasts and their regulation in vivo.

Authors:  M Hirai; E Ohtani; A Tanaka; S Fukui
Journal:  Biochim Biophys Acta       Date:  1977-02-09

7.  Levoglucosan dehydrogenase involved in the assimilation of levoglucosan in Arthrobacter sp. I-552.

Authors:  K Nakahara; Y Kitamura; Y Yamagishi; H Shoun; T Yasui
Journal:  Biosci Biotechnol Biochem       Date:  1994-12       Impact factor: 2.043

8.  Characterization of carbohydrates in rainwater from the southeastern North Carolina.

Authors:  Katherine M Mullaugh; Jade N Byrd; G Brooks Avery; Ralph N Mead; Joan D Willey; Robert J Kieber
Journal:  Chemosphere       Date:  2014-04-12       Impact factor: 7.086

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  3 in total

1.  Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.

Authors:  Masayuki Sugiura; Moe Nakahara; Chihaya Yamada; Takatoshi Arakawa; Motomitsu Kitaoka; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2018-09-17       Impact factor: 5.157

2.  Conversion of levoglucosan and cellobiosan by Pseudomonas putida KT2440.

Authors:  Jeffrey G Linger; Sarah E Hobdey; Mary Ann Franden; Emily M Fulk; Gregg T Beckham
Journal:  Metab Eng Commun       Date:  2016-02-02

3.  Utilization of mechanocatalytic oligosaccharides by ethanologenic Escherichia coli as a model microbial cell factory.

Authors:  Tao Jin; Mats Käldström; Adriana Benavides; Marcelo D Kaufman Rechulski; Laura R Jarboe
Journal:  AMB Express       Date:  2020-02-03       Impact factor: 3.298

  3 in total

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