Literature DB >> 26353065

Spherical and Hyperbolic Embeddings of Data.

Richard C Wilson, Edwin R Hancock, Elzbieta Pekalska, Robert P W Duin.   

Abstract

Many computer vision and pattern recognition problems may be posed as the analysis of a set of dissimilarities between objects. For many types of data, these dissimilarities are not euclidean (i.e., they do not represent the distances between points in a euclidean space), and therefore cannot be isometrically embedded in a euclidean space. Examples include shape-dissimilarities, graph distances and mesh geodesic distances. In this paper, we provide a means of embedding such non-euclidean data onto surfaces of constant curvature. We aim to embed the data on a space whose radius of curvature is determined by the dissimilarity data. The space can be either of positive curvature (spherical) or of negative curvature (hyperbolic). We give an efficient method for solving the spherical and hyperbolic embedding problems on symmetric dissimilarity data. Our approach gives the radius of curvature and a method for approximating the objects as points on a hyperspherical manifold without optimisation. For objects which do not reside exactly on the manifold, we develop a optimisation-based procedure for approximate embedding on a hyperspherical manifold. We use the exponential map between the manifold and its local tangent space to solve the optimisation problem locally in the euclidean tangent space. This process is efficient enough to allow us to embed data sets of several thousand objects. We apply our method to a variety of data including time warping functions, shape similarities, graph similarity and gesture similarity data. In each case the embedding maintains the local structure of the data while placing the points in a metric space.

Year:  2014        PMID: 26353065     DOI: 10.1109/TPAMI.2014.2316836

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  5 in total

1.  Hyperbolic Graph Convolutional Neural Networks.

Authors:  Ines Chami; Rex Ying; Christopher Ré; Jure Leskovec
Journal:  Adv Neural Inf Process Syst       Date:  2019-12

2.  Hyperbolic geometry of gene expression.

Authors:  Yuansheng Zhou; Tatyana O Sharpee
Journal:  iScience       Date:  2021-02-24

3.  Survey on graph embeddings and their applications to machine learning problems on graphs.

Authors:  Ilya Makarov; Dmitrii Kiselev; Nikita Nikitinsky; Lovro Subelj
Journal:  PeerJ Comput Sci       Date:  2021-02-04

4.  3D reconstruction from cryo-EM projection images using two spherical embeddings.

Authors:  Yonggang Lu; Jiaxuan Liu; Li Zhu; Bianlan Zhang; Jing He
Journal:  Commun Biol       Date:  2022-04-04

5.  Matching Biomedical Ontologies via a Hybrid Graph Attention Network.

Authors:  Peng Wang; Yunyan Hu
Journal:  Front Genet       Date:  2022-07-22       Impact factor: 4.772

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.