Literature DB >> 26351664

In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba.

Matthieu Legendre1, Audrey Lartigue1, Lionel Bertaux1, Sandra Jeudy1, Julia Bartoli1, Magali Lescot1, Jean-Marie Alempic1, Claire Ramus2, Christophe Bruley2, Karine Labadie3, Lyubov Shmakova4, Elizaveta Rivkina4, Yohann Couté2, Chantal Abergel5, Jean-Michel Claverie6.   

Abstract

Acanthamoeba species are infected by the largest known DNA viruses. These include icosahedral Mimiviruses, amphora-shaped Pandoraviruses, and Pithovirus sibericum, the latter one isolated from 30,000-y-old permafrost. Mollivirus sibericum, a fourth type of giant virus, was isolated from the same permafrost sample. Its approximately spherical virion (0.6-µm diameter) encloses a 651-kb GC-rich genome encoding 523 proteins of which 64% are ORFans; 16% have their closest homolog in Pandoraviruses and 10% in Acanthamoeba castellanii probably through horizontal gene transfer. The Mollivirus nucleocytoplasmic replication cycle was analyzed using a combination of "omic" approaches that revealed how the virus highjacks its host machinery to actively replicate. Surprisingly, the host's ribosomal proteins are packaged in the virion. Metagenomic analysis of the permafrost sample uncovered the presence of both viruses, yet in very low amount. The fact that two different viruses retain their infectivity in prehistorical permafrost layers should be of concern in a context of global warming. Giant viruses' diversity remains to be fully explored.

Entities:  

Keywords:  Pleistocene; giant virus; permafrost

Mesh:

Substances:

Year:  2015        PMID: 26351664      PMCID: PMC4586845          DOI: 10.1073/pnas.1510795112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

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Authors:  Bernard La Scola; Stéphane Audic; Catherine Robert; Liang Jungang; Xavier de Lamballerie; Michel Drancourt; Richard Birtles; Jean-Michel Claverie; Didier Raoult
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

2.  Vaccinia-like cytoplasmic replication of the giant Mimivirus.

Authors:  Yael Mutsafi; Nathan Zauberman; Ilana Sabanay; Abraham Minsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

3.  The 1.2-megabase genome sequence of Mimivirus.

Authors:  Didier Raoult; Stéphane Audic; Catherine Robert; Chantal Abergel; Patricia Renesto; Hiroyuki Ogata; Bernard La Scola; Marie Suzan; Jean-Michel Claverie
Journal:  Science       Date:  2004-10-14       Impact factor: 47.728

Review 4.  Viral proteomics.

Authors:  Karen L Maxwell; Lori Frappier
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

5.  A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa.

Authors:  Véronique Dupierris; Christophe Masselon; Magali Court; Sylvie Kieffer-Jaquinod; Christophe Bruley
Journal:  Bioinformatics       Date:  2009-05-06       Impact factor: 6.937

6.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

7.  Whole-genome sequencing of a pandoravirus isolated from keratitis-inducing acanthamoeba.

Authors:  M H Antwerpen; E Georgi; L Zoeller; R Woelfel; K Stoecker; P Scheid
Journal:  Genome Announc       Date:  2015-03-26

8.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

9.  Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage.

Authors:  Niyaz Yoosuf; Natalya Yutin; Philippe Colson; Svetlana A Shabalina; Isabelle Pagnier; Catherine Robert; Said Azza; Thomas Klose; Jimson Wong; Michael G Rossmann; Bernard La Scola; Didier Raoult; Eugene V Koonin
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

10.  Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

Authors:  Jürgen Cox; Marco Y Hein; Christian A Luber; Igor Paron; Nagarjuna Nagaraj; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2014-06-17       Impact factor: 5.911

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  108 in total

1.  On the occurrence of cytochrome P450 in viruses.

Authors:  David C Lamb; Alec H Follmer; Jared V Goldstone; David R Nelson; Andrew G Warrilow; Claire L Price; Marie Y True; Steven L Kelly; Thomas L Poulos; John J Stegeman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-05       Impact factor: 11.205

2.  New Isolates of Pandoraviruses: Contribution to the Study of Replication Cycle Steps.

Authors:  Ana Cláudia Dos Santos Pereira Andrade; Paulo Victor de Miranda Boratto; Rodrigo Araújo Lima Rodrigues; Talita Machado Bastos; Bruna Luiza Azevedo; Fábio Pio Dornas; Danilo Bretas Oliveira; Betânia Paiva Drumond; Erna Geessien Kroon; Jônatas Santos Abrahão
Journal:  J Virol       Date:  2019-02-19       Impact factor: 5.103

3.  Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii.

Authors:  Paulo V M Boratto; Graziele P Oliveira; Talita B Machado; Ana Cláudia S P Andrade; Jean-Pierre Baudoin; Thomas Klose; Frederik Schulz; Saïd Azza; Philippe Decloquement; Eric Chabrière; Philippe Colson; Anthony Levasseur; Bernard La Scola; Jônatas S Abrahão
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

4.  Host genome integration and giant virus-induced reactivation of the virophage mavirus.

Authors:  Matthias G Fischer; Thomas Hackl
Journal:  Nature       Date:  2016-12-07       Impact factor: 49.962

5.  Pacmanvirus, a New Giant Icosahedral Virus at the Crossroads between Asfarviridae and Faustoviruses.

Authors:  Julien Andreani; Jacques Yaacoub Bou Khalil; Madhumati Sevvana; Samia Benamar; Fabrizio Di Pinto; Idir Bitam; Philippe Colson; Thomas Klose; Michael G Rossmann; Didier Raoult; Bernard La Scola
Journal:  J Virol       Date:  2017-06-26       Impact factor: 5.103

6.  The cryo-EM structure of African swine fever virus unravels a unique architecture comprising two icosahedral protein capsids and two lipoprotein membranes.

Authors:  German Andrés; Diego Charro; Tania Matamoros; Rebecca S Dillard; Nicola G A Abrescia
Journal:  J Biol Chem       Date:  2019-10-24       Impact factor: 5.157

7.  Isolation of Yasminevirus, the First Member of Klosneuvirinae Isolated in Coculture with Vermamoeba vermiformis, Demonstrates an Extended Arsenal of Translational Apparatus Components.

Authors:  Leena Hussein Bajrai; Saïd Mougari; Julien Andreani; Emeline Baptiste; Jeremy Delerce; Didier Raoult; Esam Ibraheem Azhar; Bernard La Scola; Anthony Levasseur
Journal:  J Virol       Date:  2019-12-12       Impact factor: 5.103

Review 8.  Global Organization and Proposed Megataxonomy of the Virus World.

Authors:  Eugene V Koonin; Valerian V Dolja; Mart Krupovic; Arvind Varsani; Yuri I Wolf; Natalya Yutin; F Murilo Zerbini; Jens H Kuhn
Journal:  Microbiol Mol Biol Rev       Date:  2020-03-04       Impact factor: 11.056

9.  The Large Marseillevirus Explores Different Entry Pathways by Forming Giant Infectious Vesicles.

Authors:  Thalita Souza Arantes; Rodrigo Araújo Lima Rodrigues; Ludmila Karen Dos Santos Silva; Graziele Pereira Oliveira; Helton Luís de Souza; Jacques Y B Khalil; Danilo Bretas de Oliveira; Alice Abreu Torres; Luis Lamberti da Silva; Philippe Colson; Erna Geessien Kroon; Flávio Guimarães da Fonseca; Cláudio Antônio Bonjardim; Bernard La Scola; Jônatas Santos Abrahão
Journal:  J Virol       Date:  2016-05-12       Impact factor: 5.103

10.  Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses.

Authors:  Eugene Christo-Foroux; Jean-Marie Alempic; Audrey Lartigue; Sebastien Santini; Karine Labadie; Matthieu Legendre; Chantal Abergel; Jean-Michel Claverie
Journal:  J Virol       Date:  2020-03-31       Impact factor: 5.103

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