Literature DB >> 26340938

Beyond knockouts: the International Knockout Mouse Consortium delivers modular and evolving tools for investigating mammalian genes.

B Rosen1, J Schick2, W Wurst3,4,5,6.   

Abstract

The International Knockout Mouse Consortium (IKMC; http://www.mousephenotype.org ) has generated mutations in almost every protein-coding mouse gene and is completing the companion Cre driver resource to expand tissue-specific conditional mutagenesis. Accordingly, the IKMC has carried out high-throughput gene trapping and targeting producing conditional mutations in murine embryonic stem cells in more than 18,500 genes, from which at least 4900 mutant mouse lines have been established to date. This resource is currently being upgraded with more powerful tools, such as visualization and manipulation cassettes that can be easily introduced into IKMC alleles for multifaceted functional studies. In addition, we discuss how existing IKMC products can be used in combination with CRISPR technology to accelerate genome engineering projects. All information and materials from this extraordinary biological resource together with coordinated phenotyping efforts can be retrieved at www.mousephenotype.org . The comprehensive IKMC knockout resource in combination with an extensive set of modular gene cassettes will continue to enhance functional gene annotation in the future and solidify its impact on biomedical research.

Entities:  

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Year:  2015        PMID: 26340938     DOI: 10.1007/s00335-015-9598-3

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  32 in total

1.  Establishment of a gene-trap sequence tag library to generate mutant mice from embryonic stem cells.

Authors:  M V Wiles; F Vauti; J Otte; E M Füchtbauer; P Ruiz; A Füchtbauer; H H Arnold; H Lehrach; T Metz; H von Melchner; W Wurst
Journal:  Nat Genet       Date:  2000-01       Impact factor: 38.330

2.  Promoter traps in embryonic stem cells: a genetic screen to identify and mutate developmental genes in mice.

Authors:  G Friedrich; P Soriano
Journal:  Genes Dev       Date:  1991-09       Impact factor: 11.361

3.  Splinkerette PCR for more efficient characterization of gene trap events.

Authors:  Carsten Horn; Jens Hansen; Frank Schnütgen; Claudia Seisenberger; Thomas Floss; Markus Irgang; Silke De-Zolt; Wolfgang Wurst; Harald von Melchner; Patricia Ruiz Noppinger
Journal:  Nat Genet       Date:  2007-08       Impact factor: 38.330

4.  The knockout mouse project.

Authors:  Christopher P Austin; James F Battey; Allan Bradley; Maja Bucan; Mario Capecchi; Francis S Collins; William F Dove; Geoffrey Duyk; Susan Dymecki; Janan T Eppig; Franziska B Grieder; Nathaniel Heintz; Geoff Hicks; Thomas R Insel; Alexandra Joyner; Beverly H Koller; K C Kent Lloyd; Terry Magnuson; Mark W Moore; Andras Nagy; Jonathan D Pollock; Allen D Roses; Arthur T Sands; Brian Seed; William C Skarnes; Jay Snoddy; Philippe Soriano; David J Stewart; Francis Stewart; Bruce Stillman; Harold Varmus; Lyuba Varticovski; Inder M Verma; Thomas F Vogt; Harald von Melchner; Jan Witkowski; Richard P Woychik; Wolfgang Wurst; George D Yancopoulos; Stephen G Young; Brian Zambrowicz
Journal:  Nat Genet       Date:  2004-09       Impact factor: 38.330

5.  A public gene trap resource for mouse functional genomics.

Authors:  William C Skarnes; Harald von Melchner; Wolfgang Wurst; Geoff Hicks; Alex S Nord; Tony Cox; Stephen G Young; Patricia Ruiz; Phil Soriano; Marc Tessier-Lavigne; Bruce R Conklin; William L Stanford; Janet Rossant
Journal:  Nat Genet       Date:  2004-06       Impact factor: 38.330

6.  NANOG and CDX2 pattern distinct subtypes of human mesoderm during exit from pluripotency.

Authors:  Sasha Mendjan; Victoria L Mascetti; Daniel Ortmann; Mariaestela Ortiz; Dyah W Karjosukarso; Yifan Ng; Thomas Moreau; Roger A Pedersen
Journal:  Cell Stem Cell       Date:  2014-07-18       Impact factor: 24.633

7.  The mammalian gene function resource: the International Knockout Mouse Consortium.

Authors:  Allan Bradley; Konstantinos Anastassiadis; Abdelkader Ayadi; James F Battey; Cindy Bell; Marie-Christine Birling; Joanna Bottomley; Steve D Brown; Antje Bürger; Carol J Bult; Wendy Bushell; Francis S Collins; Christian Desaintes; Brendan Doe; Aris Economides; Janan T Eppig; Richard H Finnell; Colin Fletcher; Martin Fray; David Frendewey; Roland H Friedel; Frank G Grosveld; Jens Hansen; Yann Hérault; Geoffrey Hicks; Andreas Hörlein; Richard Houghton; Martin Hrabé de Angelis; Danny Huylebroeck; Vivek Iyer; Pieter J de Jong; James A Kadin; Cornelia Kaloff; Karen Kennedy; Manousos Koutsourakis; K C Kent Lloyd; Susan Marschall; Jeremy Mason; Colin McKerlie; Michael P McLeod; Harald von Melchner; Mark Moore; Alejandro O Mujica; Andras Nagy; Mikhail Nefedov; Lauryl M Nutter; Guillaume Pavlovic; Jane L Peterson; Jonathan Pollock; Ramiro Ramirez-Solis; Derrick E Rancourt; Marcello Raspa; Jacques E Remacle; Martin Ringwald; Barry Rosen; Nadia Rosenthal; Janet Rossant; Patricia Ruiz Noppinger; Ed Ryder; Joel Zupicich Schick; Frank Schnütgen; Paul Schofield; Claudia Seisenberger; Mohammed Selloum; Elizabeth M Simpson; William C Skarnes; Damian Smedley; William L Stanford; A Francis Stewart; Kevin Stone; Kate Swan; Hamsa Tadepally; Lydia Teboul; Glauco P Tocchini-Valentini; David Valenzuela; Anthony P West; Ken-ichi Yamamura; Yuko Yoshinaga; Wolfgang Wurst
Journal:  Mamm Genome       Date:  2012-09-12       Impact factor: 2.957

8.  Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells.

Authors:  Alex S Nord; Karen Vranizan; Whittemore Tingley; Alexander C Zambon; Kristina Hanspers; Loren G Fong; Yan Hu; Peter Bacchetti; Thomas E Ferrin; Patricia C Babbitt; Scott W Doniger; William C Skarnes; Stephen G Young; Bruce R Conklin
Journal:  PLoS One       Date:  2007-07-18       Impact factor: 3.240

9.  Rapid conversion of EUCOMM/KOMP-CSD alleles in mouse embryos using a cell-permeable Cre recombinase.

Authors:  Edward Ryder; Brendan Doe; Diane Gleeson; Richard Houghton; Priya Dalvi; Evelyn Grau; Bishoy Habib; Evelina Miklejewska; Stuart Newman; Debarati Sethi; Caroline Sinclair; Sapna Vyas; Hannah Wardle-Jones; Joanna Bottomley; James Bussell; Antonella Galli; Jennifer Salisbury; Ramiro Ramirez-Solis
Journal:  Transgenic Res       Date:  2013-11-07       Impact factor: 2.788

10.  The European dimension for the mouse genome mutagenesis program.

Authors:  Johan Auwerx; Phil Avner; Richard Baldock; Andrea Ballabio; Rudi Balling; Mariano Barbacid; Anton Berns; Allan Bradley; Steve Brown; Peter Carmeliet; Pierre Chambon; Roger Cox; Duncan Davidson; Kay Davies; Denis Duboule; Jiri Forejt; Francesca Granucci; Nick Hastie; Martin Hrabé de Angelis; Ian Jackson; Dimitris Kioussis; George Kollias; Mark Lathrop; Urban Lendahl; Marcos Malumbres; Harald von Melchner; Werner Müller; Juha Partanen; Paola Ricciardi-Castagnoli; Peter Rigby; Barry Rosen; Nadia Rosenthal; Bill Skarnes; A Francis Stewart; Janet Thornton; Glauco Tocchini-Valentini; Erwin Wagner; Walter Wahli; Wolfgang Wurst
Journal:  Nat Genet       Date:  2004-09       Impact factor: 38.330

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  17 in total

Review 1.  Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case.

Authors:  Kathryn S McClelland; Humphrey H-C Yao
Journal:  Sex Dev       Date:  2017-02-15       Impact factor: 1.824

2.  A collection of genetic mouse lines and related tools for inducible and reversible intersectional mis-expression.

Authors:  Elham Ahmadzadeh; N Sumru Bayin; Xinli Qu; Aditi Singh; Linda Madisen; Daniel Stephen; Hongkui Zeng; Alexandra L Joyner; Alberto Rosello-Diez
Journal:  Development       Date:  2020-05-28       Impact factor: 6.868

3.  Infection-specific phosphorylation of glutamyl-prolyl tRNA synthetase induces antiviral immunity.

Authors:  Eun-Young Lee; Hyun-Cheol Lee; Hyun-Kwan Kim; Song Yee Jang; Seong-Jun Park; Yong-Hoon Kim; Jong Hwan Kim; Jungwon Hwang; Jae-Hoon Kim; Tae-Hwan Kim; Abul Arif; Seon-Young Kim; Young-Ki Choi; Cheolju Lee; Chul-Ho Lee; Jae U Jung; Paul L Fox; Sunghoon Kim; Jong-Soo Lee; Myung Hee Kim
Journal:  Nat Immunol       Date:  2016-09-05       Impact factor: 25.606

4.  Leveraging a Sturge-Weber Gene Discovery: An Agenda for Future Research.

Authors:  Anne M Comi; Mustafa Sahin; Adrienne Hammill; Emma H Kaplan; Csaba Juhász; Paula North; Karen L Ball; Alex V Levin; Bernard Cohen; Jill Morris; Warren Lo; E Steve Roach
Journal:  Pediatr Neurol       Date:  2016-03-16       Impact factor: 3.372

5.  CRISPR-Cas9 enables conditional mutagenesis of challenging loci.

Authors:  Joel A Schick; Claudia Seisenberger; Joachim Beig; Antje Bürger; Vivek Iyer; Viola Maier; Sajith Perera; Barry Rosen; William C Skarnes; Wolfgang Wurst
Journal:  Sci Rep       Date:  2016-09-01       Impact factor: 4.379

6.  Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse.

Authors:  Cynthia L Smith; Judith A Blake; James A Kadin; Joel E Richardson; Carol J Bult
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

7.  PiggyBac transposon-based polyadenylation-signal trap for genome-wide mutagenesis in mice.

Authors:  Limei Li; Peng Liu; Liangliang Sun; Jian Fei
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

Review 8.  Diversity matters - heterogeneity of dopaminergic neurons in the ventral mesencephalon and its relation to Parkinson's Disease.

Authors:  Daniela Maria Vogt Weisenhorn; Florian Giesert; Wolfgang Wurst
Journal:  J Neurochem       Date:  2016-06-27       Impact factor: 5.372

9.  An efficient method for generation of bi-allelic null mutant mouse embryonic stem cells and its application for investigating epigenetic modifiers.

Authors:  Cynthia L Fisher; Hendrik Marks; Lily Ting-Yin Cho; Robert Andrews; Sam Wormald; Thomas Carroll; Vivek Iyer; Peri Tate; Barry Rosen; Hendrik G Stunnenberg; Amanda G Fisher; William C Skarnes
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

Review 10.  Modeling human disease in rodents by CRISPR/Cas9 genome editing.

Authors:  Marie-Christine Birling; Yann Herault; Guillaume Pavlovic
Journal:  Mamm Genome       Date:  2017-07-04       Impact factor: 2.957

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