Literature DB >> 26340501

Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes.

Ximei Zhang1,2, Eric R Johnston3, Wei Liu4,5, Linghao Li6, Xingguo Han1,6.   

Abstract

Both 'species fitness difference'-based deterministic processes, such as competitive exclusion and environmental filtering, and 'species fitness difference'-independent stochastic processes, such as birth/death and dispersal/colonization, can influence the assembly of soil microbial communities. However, how both types of processes are mediated by anthropogenic environmental changes has rarely been explored. Here we report a novel and general pattern that almost all anthropogenic environmental changes that took place in a grassland ecosystem affected soil bacterial community assembly primarily through promoting or restraining stochastic processes. We performed four experiments mimicking 16 types of environmental changes and separated the compositional variation of soil bacterial communities caused by each environmental change into deterministic and stochastic components, with a recently developed method. Briefly, because the difference between control and treatment communities is primarily caused by deterministic processes, the deterministic change was quantified as (mean compositional variation between treatment and control) - (mean compositional variation within control). The difference among replicate treatment communities is primarily caused by stochastic processes, so the stochastic change was estimated as (mean compositional variation within treatment) - (mean compositional variation within control). The absolute of the stochastic change was greater than that of the deterministic change across almost all environmental changes, which was robust for both taxonomic and functional-based criterion. Although the deterministic change may become more important as environmental changes last longer, our findings showed that changes usually occurred through mediating stochastic processes over 5 years, challenging the traditional determinism-dominated view.
© 2015 John Wiley & Sons Ltd.

Entities:  

Keywords:  biodiversity loss; climate change; colonization; dispersal; global change; grassland; metagenome; neutral process; niche; nitrogen deposition

Mesh:

Substances:

Year:  2015        PMID: 26340501     DOI: 10.1111/gcb.13080

Source DB:  PubMed          Journal:  Glob Chang Biol        ISSN: 1354-1013            Impact factor:   10.863


  16 in total

1.  Local biotic interactions drive species-specific divergence in soil bacterial communities.

Authors:  Xin-Feng Zhao; Yi-Qi Hao; Da-Yong Zhang; Quan-Guo Zhang
Journal:  ISME J       Date:  2019-07-29       Impact factor: 10.302

2.  Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species.

Authors:  Emmanuel Haruna; Noraziah M Zin; Dorsaf Kerfahi; Jonathan M Adams
Journal:  Microb Ecol       Date:  2017-06-22       Impact factor: 4.552

Review 3.  Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Authors:  Jizhong Zhou; Daliang Ning
Journal:  Microbiol Mol Biol Rev       Date:  2017-10-11       Impact factor: 11.056

4.  The Aboveground Vegetation Type and Underground Soil Property Mediate the Divergence of Soil Microbiomes and the Biological Interactions.

Authors:  Shu-Hong Wu; Bing-Hong Huang; Chia-Lung Huang; Gang Li; Pei-Chun Liao
Journal:  Microb Ecol       Date:  2017-08-01       Impact factor: 4.552

Review 5.  Integrating succession and community assembly perspectives.

Authors:  Cynthia Chang; Janneke HilleRisLambers
Journal:  F1000Res       Date:  2016-09-12

6.  Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut.

Authors:  Aspen T Reese; Eugenia H Cho; Bruce Klitzman; Scott P Nichols; Natalie A Wisniewski; Max M Villa; Heather K Durand; Sharon Jiang; Firas S Midani; Sai N Nimmagadda; Thomas M O'Connell; Justin P Wright; Marc A Deshusses; Lawrence A David
Journal:  Elife       Date:  2018-06-19       Impact factor: 8.140

7.  Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes.

Authors:  Ximei Zhang; Eric R Johnston; Yaosheng Wang; Qiang Yu; Dashuan Tian; Zhiping Wang; Yanqing Zhang; Daozhi Gong; Chun Luo; Wei Liu; Junjie Yang; Xingguo Han
Journal:  mSystems       Date:  2019-10-01       Impact factor: 6.496

8.  Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions.

Authors:  Máté Vass; Anna J Székely; Eva S Lindström; Silke Langenheder
Journal:  Sci Rep       Date:  2020-02-12       Impact factor: 4.379

9.  Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics.

Authors:  Cheng Gao; Liliam Montoya; Ling Xu; Mary Madera; Joy Hollingsworth; Elizabeth Purdom; Vasanth Singan; John Vogel; Robert B Hutmacher; Jeffery A Dahlberg; Devin Coleman-Derr; Peggy G Lemaux; John W Taylor
Journal:  Nat Commun       Date:  2020-01-07       Impact factor: 14.919

10.  Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.

Authors:  Eric R Johnston; Luis M Rodriguez-R; Chengwei Luo; Mengting M Yuan; Liyou Wu; Zhili He; Edward A G Schuur; Yiqi Luo; James M Tiedje; Jizhong Zhou; Konstantinos T Konstantinidis
Journal:  Front Microbiol       Date:  2016-04-25       Impact factor: 5.640

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