Literature DB >> 26339073

Genetic GIScience: Toward a Place-Based Synthesis of the Genome, Exposome, and Behavome.

Geoffrey M Jacquez1, Clive E Sabel2, Chen Shi3.   

Abstract

The exposome, defined as the totality of an individual's exposures over the life course, is a seminal concept in the environmental health sciences. Although inherently geographic, the exposome as yet is unfamiliar to many geographers. This article proposes a place-based synthesis, genetic geographic information science (Genetic GISc) that is founded on the exposome, genome+ and behavome. It provides an improved understanding of human health in relation to biology (the genome+), environmental exposures (the exposome), and their social, societal and behavioral determinants (the behavome). Genetic GISc poses three key needs: First, a mathematical foundation for emergent theory; Second, process-based models that bridge biological and geographic scales; Third, biologically plausible estimates of space-time disease lags. Compartmental models are a possible solution; this article develops two models using pancreatic cancer as an exemplar. The first models carcinogenesis based on the cascade of mutations and cellular changes that lead to metastatic cancer. The second models cancer stages by diagnostic criteria. These provide empirical estimates of the distribution of latencies in cellular states and disease stages, and maps of the burden of yet to be diagnosed disease. This approach links our emerging knowledge of genomics to cancer progression at the cellular level, to individuals and their cancer stage at diagnosis, to geographic distributions of cancer in extant populations. These methodological developments and exemplar provide the basis for a new synthesis in health geography: genetic geographic information science.

Entities:  

Keywords:  Cancer epidemiology; dynamical systems; genetic GISc; health geography; space-time

Year:  2015        PMID: 26339073      PMCID: PMC4554694          DOI: 10.1080/00045608.2015.1018777

Source DB:  PubMed          Journal:  Ann Assoc Am Geogr        ISSN: 0004-5608


  46 in total

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Journal:  Am J Epidemiol       Date:  2003-05-15       Impact factor: 4.897

2.  From place-based to people-based exposure measures.

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3.  Migration and morbidity: implications for geographical studies of disease.

Authors:  G Bentham
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4.  The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

Authors:  Peter J Campbell; Shinichi Yachida; Laura J Mudie; Philip J Stephens; Erin D Pleasance; Lucy A Stebbings; Laura A Morsberger; Calli Latimer; Stuart McLaren; Meng-Lay Lin; David J McBride; Ignacio Varela; Serena A Nik-Zainal; Catherine Leroy; Mingming Jia; Andrew Menzies; Adam P Butler; Jon W Teague; Constance A Griffin; John Burton; Harold Swerdlow; Michael A Quail; Michael R Stratton; Christine Iacobuzio-Donahue; P Andrew Futreal
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

5.  Pediatric thyroid cancer after the Chernobyl disaster. Pathomorphologic study of 84 cases (1991-1992) from the Republic of Belarus.

Authors:  Y Nikiforov; D R Gnepp
Journal:  Cancer       Date:  1994-07-15       Impact factor: 6.860

Review 6.  Systems biology approaches to pancreatic cancer detection, prevention and treatment.

Authors:  Osama M Alian; Philip A Philip; Fazlul H Sarkar; Asfar S Azmi
Journal:  Curr Pharm Des       Date:  2014       Impact factor: 3.116

7.  The time of occurrence of liver metastasis in carcinoma of the pancreas.

Authors:  K Amikura; M Kobari; S Matsuno
Journal:  Int J Pancreatol       Date:  1995-04

8.  Exposure science and the exposome: an opportunity for coherence in the environmental health sciences.

Authors:  Paul J Lioy; Stephen M Rappaport
Journal:  Environ Health Perspect       Date:  2011-11       Impact factor: 9.031

9.  Current practices in cancer spatial data analysis: a call for guidance.

Authors:  Linda Williams Pickle; Lance A Waller; Andrew B Lawson
Journal:  Int J Health Geogr       Date:  2005-01-13       Impact factor: 3.918

10.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

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  6 in total

1.  Geographic Information Science and the Analysis of Place and Health.

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2.  THE LONG-TERM DYNAMICS OF RACIAL/ETHNIC INEQUALITY IN NEIGHBORHOOD AIR POLLUTION EXPOSURE, 1990-2009.

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Journal:  Du Bois Rev       Date:  2016-10-26

3.  Gene-Environment-Time Interactions in Neurodegenerative Diseases: Hypotheses and Research Approaches.

Authors:  Walter G Bradley; Angeline S Andrew; Bryan J Traynor; Adriano Chiò; Tanya H Butt; Elijah W Stommel
Journal:  Ann Neurosci       Date:  2018-12-04

4.  Assessing Cyanobacterial Harmful Algal Blooms as Risk Factors for Amyotrophic Lateral Sclerosis.

Authors:  Nathan Torbick; Beth Ziniti; Elijah Stommel; Ernst Linder; Angeline Andrew; Tracie Caller; Jim Haney; Walter Bradley; Patricia L Henegan; Xun Shi
Journal:  Neurotox Res       Date:  2017-10-03       Impact factor: 3.911

Review 5.  How Sensors Might Help Define the External Exposome.

Authors:  Miranda Loh; Dimosthenis Sarigiannis; Alberto Gotti; Spyros Karakitsios; Anjoeka Pronk; Eelco Kuijpers; Isabella Annesi-Maesano; Nour Baiz; Joana Madureira; Eduardo Oliveira Fernandes; Michael Jerrett; John W Cherrie
Journal:  Int J Environ Res Public Health       Date:  2017-04-18       Impact factor: 3.390

6.  Residential mobility: Towards progress in mobility health research.

Authors:  Tim Morris; David Manley; Clive E Sabel
Journal:  Prog Hum Geogr       Date:  2016-05-19
  6 in total

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