Literature DB >> 26336913

A synonymous codon change alters the drug sensitivity of ΔF508 cystic fibrosis transmembrane conductance regulator.

Vedrana Bali1, Ahmed Lazrak1, Purushotham Guroji1, Lianwu Fu1, Sadis Matalon1, Zsuzsanna Bebok2.   

Abstract

Synonymous mutations, such as I507-ATC→ATT, in deletion of Phe508 in cystic fibrosis transmembrane conductance regulator (ΔF508 CFTR), the most frequent disease-associated mutant of CFTR, may affect protein biogenesis, structure, and function and contribute to an altered disease phenotype. Small-molecule drugs are being developed to correct ΔF508 CFTR. To understand correction mechanisms and the consequences of synonymous mutations, we analyzed the effect of mechanistically distinct correctors, corrector 4a (C4) and lumacaftor (VX-809), on I507-ATT and I507-ATC ΔF508 CFTR biogenesis and function. C4 stabilized I507-ATT ΔF508 CFTR band B, but without considerable biochemical and functional correction. VX-809 biochemically corrected ∼10% of both of the variants, leading to stable, forskolin+3-isobutyl-1-methylxanthine (IBMX)-activated whole-cell currents in the presence of the corrector. Omitting VX-809 during whole-cell recordings led to a spontaneous decline of the currents, suggesting posttranslational stabilization by VX-809. Treatment of cells with the C4+VX-809 combination resulted in enhanced rescue and 2-fold higher forskolin+IBMX-activated currents of both I507-ATT and I507-ATC ΔF508 CFTR, compared with VX-809 treatment alone. The lack of an effect of C4 on I507-ATC ΔF508 CFTR, but its additive effect in combination with VX-809, implies that C4 acted on VX-809-modified I507-ATC ΔF508 CFTR. Our results suggest that binding of C4 and VX-809 to ΔF508 CFTR is conformation specific and provide evidence that synonymous mutations can alter the drug sensitivity of proteins. © FASEB.

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Year:  2015        PMID: 26336913      PMCID: PMC4684529          DOI: 10.1096/fj.15-273714

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  72 in total

1.  Domain interdependence in the biosynthetic assembly of CFTR.

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Journal:  J Mol Biol       Date:  2006-11-10       Impact factor: 5.469

Review 2.  Protein therapeutics: a summary and pharmacological classification.

Authors:  Benjamin Leader; Quentin J Baca; David E Golan
Journal:  Nat Rev Drug Discov       Date:  2008-01       Impact factor: 84.694

3.  Protein folding. Translational tuning optimizes nascent protein folding in cells.

Authors:  Soo Jung Kim; Jae Seok Yoon; Hideki Shishido; Zhongying Yang; LeeAnn A Rooney; Jose M Barral; William R Skach
Journal:  Science       Date:  2015-04-24       Impact factor: 47.728

Review 4.  Decoding mechanisms by which silent codon changes influence protein biogenesis and function.

Authors:  Vedrana Bali; Zsuzsanna Bebok
Journal:  Int J Biochem Cell Biol       Date:  2015-03-26       Impact factor: 5.085

5.  Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA.

Authors:  J R Riordan; J M Rommens; B Kerem; N Alon; R Rozmahel; Z Grzelczak; J Zielenski; S Lok; N Plavsic; J L Chou
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

6.  The silent codon change I507-ATC->ATT contributes to the severity of the ΔF508 CFTR channel dysfunction.

Authors:  Ahmed Lazrak; Lianwu Fu; Vedrana Bali; Rafal Bartoszewski; Andras Rab; Viktoria Havasi; Steve Keiles; John Kappes; Ranjit Kumar; Elliot Lefkowitz; Eric J Sorscher; Sadis Matalon; James F Collawn; Zsuzsanna Bebok
Journal:  FASEB J       Date:  2013-08-01       Impact factor: 5.191

Review 7.  Synonymous but not the same: the causes and consequences of codon bias.

Authors:  Joshua B Plotkin; Grzegorz Kudla
Journal:  Nat Rev Genet       Date:  2010-11-23       Impact factor: 53.242

8.  Some gating potentiators, including VX-770, diminish ΔF508-CFTR functional expression.

Authors:  Guido Veit; Radu G Avramescu; Doranda Perdomo; Puay-Wah Phuan; Miklos Bagdany; Pirjo M Apaja; Florence Borot; Daniel Szollosi; Yu-Sheng Wu; Walter E Finkbeiner; Tamas Hegedus; Alan S Verkman; Gergely L Lukacs
Journal:  Sci Transl Med       Date:  2014-07-23       Impact factor: 17.956

9.  Functional activation of the cystic fibrosis trafficking mutant delta F508-CFTR by overexpression.

Authors:  S H Cheng; S L Fang; J Zabner; J Marshall; S Piraino; S C Schiavi; D M Jefferson; M J Welsh; A E Smith
Journal:  Am J Physiol       Date:  1995-04

10.  Mechanism-based corrector combination restores ΔF508-CFTR folding and function.

Authors:  Tsukasa Okiyoneda; Guido Veit; Johanna F Dekkers; Miklos Bagdany; Naoto Soya; Haijin Xu; Ariel Roldan; Alan S Verkman; Mark Kurth; Agnes Simon; Tamas Hegedus; Jeffrey M Beekman; Gergely L Lukacs
Journal:  Nat Chem Biol       Date:  2013-05-12       Impact factor: 15.040

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  6 in total

1.  Nanomechanics combined with HDX reveals allosteric drug binding sites of CFTR NBD1.

Authors:  Rita Padányi; Bianka Farkas; Hedvig Tordai; Bálint Kiss; Helmut Grubmüller; Naoto Soya; Gergely L Lukács; Miklós Kellermayer; Tamás Hegedűs
Journal:  Comput Struct Biotechnol J       Date:  2022-05-23       Impact factor: 6.155

2.  Identification of a synonymous variant in TRIM59 gene for gastric cancer risk in a Chinese population.

Authors:  Dakui Luo; Younan Wang; Xiangkun Huan; Chi Huang; Chao Yang; Hao Fan; Zekuan Xu; Li Yang
Journal:  Oncotarget       Date:  2017-02-14

Review 3.  Codon bias and the folding dynamics of the cystic fibrosis transmembrane conductance regulator.

Authors:  Rafal Bartoszewski; Jaroslaw Króliczewski; James F Collawn; Arkadiusz Piotrowski; Anna Janaszak Jasiecka; Sylwia Bartoszewska; Briana Vecchio-Pagan; Lianwu Fu; Aleksandra Sobolewska; Sadis Matalon; Garry R Cutting; Steven M Rowe
Journal:  Cell Mol Biol Lett       Date:  2016-10-19       Impact factor: 5.787

4.  Mechanistic Approaches to Improve Correction of the Most Common Disease-Causing Mutation in Cystic Fibrosis.

Authors:  Vedrana Bali; Ahmed Lazrak; Purushotham Guroji; Sadis Matalon; Zsuzsanna Bebok
Journal:  PLoS One       Date:  2016-05-23       Impact factor: 3.240

Review 5.  CFTR Modulators: Shedding Light on Precision Medicine for Cystic Fibrosis.

Authors:  Miquéias Lopes-Pacheco
Journal:  Front Pharmacol       Date:  2016-09-05       Impact factor: 5.810

6.  Alteration of protein function by a silent polymorphism linked to tRNA abundance.

Authors:  Sebastian Kirchner; Zhiwei Cai; Robert Rauscher; Nicolai Kastelic; Melanie Anding; Andreas Czech; Bertrand Kleizen; Lynda S Ostedgaard; Ineke Braakman; David N Sheppard; Zoya Ignatova
Journal:  PLoS Biol       Date:  2017-05-16       Impact factor: 8.029

  6 in total

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