Literature DB >> 26324911

Structure of Drosophila Oskar reveals a novel RNA binding protein.

Na Yang1, Zhenyu Yu2, Menglong Hu2, Mingzhu Wang2, Ruth Lehmann3, Rui-Ming Xu1.   

Abstract

Oskar (Osk) protein plays critical roles during Drosophila germ cell development, yet its functions in germ-line formation and body patterning remain poorly understood. This situation contrasts sharply with the vast knowledge about the function and mechanism of osk mRNA localization. Osk is predicted to have an N-terminal LOTUS domain (Osk-N), which has been suggested to bind RNA, and a C-terminal hydrolase-like domain (Osk-C) of unknown function. Here, we report the crystal structures of Osk-N and Osk-C. Osk-N shows a homodimer of winged-helix-fold modules, but without detectable RNA-binding activity. Osk-C has a lipase-fold structure but lacks critical catalytic residues at the putative active site. Surprisingly, we found that Osk-C binds the 3'UTRs of osk and nanos mRNA in vitro. Mutational studies identified a region of Osk-C important for mRNA binding. These results suggest possible functions of Osk in the regulation of stability, regulation of translation, and localization of relevant mRNAs through direct interaction with their 3'UTRs, and provide structural insights into a novel protein-RNA interaction motif involving a hydrolase-related domain.

Entities:  

Keywords:  3′UTR; Oskar; RNA-binding; germ cell; structure

Mesh:

Substances:

Year:  2015        PMID: 26324911      PMCID: PMC4577175          DOI: 10.1073/pnas.1515568112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Induction of germ cell formation by oskar.

Authors:  A Ephrussi; R Lehmann
Journal:  Nature       Date:  1992-07-30       Impact factor: 49.962

2.  Bruno acts as a dual repressor of oskar translation, promoting mRNA oligomerization and formation of silencing particles.

Authors:  Marina Chekulaeva; Matthias W Hentze; Anne Ephrussi
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

3.  The Nanos gradient in Drosophila embryos is generated by translational regulation.

Authors:  A Dahanukar; R P Wharton
Journal:  Genes Dev       Date:  1996-10-15       Impact factor: 11.361

4.  Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA.

Authors:  Sanjay Ghosh; Virginie Marchand; Imre Gáspár; Anne Ephrussi
Journal:  Nat Struct Mol Biol       Date:  2012-03-18       Impact factor: 15.369

Review 5.  Assembly of the Drosophila germ plasm.

Authors:  A P Mahowald
Journal:  Int Rev Cytol       Date:  2001

6.  Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.

Authors:  Alfredo Castello; Bernd Fischer; Katrin Eichelbaum; Rastislav Horos; Benedikt M Beckmann; Claudia Strein; Norman E Davey; David T Humphreys; Thomas Preiss; Lars M Steinmetz; Jeroen Krijgsveld; Matthias W Hentze
Journal:  Cell       Date:  2012-05-31       Impact factor: 41.582

7.  Oskar protein interaction with Vasa represents an essential step in polar granule assembly.

Authors:  W Breitwieser; F H Markussen; H Horstmann; A Ephrussi
Journal:  Genes Dev       Date:  1996-09-01       Impact factor: 11.361

8.  Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells.

Authors:  Kazuko Hanyu-Nakamura; Hiroko Sonobe-Nojima; Akie Tanigawa; Paul Lasko; Akira Nakamura
Journal:  Nature       Date:  2008-01-16       Impact factor: 49.962

9.  Translational regulation of oskar mRNA by bruno, an ovarian RNA-binding protein, is essential.

Authors:  J Kim-Ha; K Kerr; P M Macdonald
Journal:  Cell       Date:  1995-05-05       Impact factor: 41.582

10.  Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.

Authors:  Helena Jambor; Vineeth Surendranath; Alex T Kalinka; Pavel Mejstrik; Stephan Saalfeld; Pavel Tomancak
Journal:  Elife       Date:  2015-04-02       Impact factor: 8.140

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  20 in total

1.  Phase transitioned nuclear Oskar promotes cell division of Drosophila primordial germ cells.

Authors:  Kathryn E Kistler; Tatjana Trcek; Thomas R Hurd; Ruoyu Chen; Feng-Xia Liang; Joseph Sall; Masato Kato; Ruth Lehmann
Journal:  Elife       Date:  2018-09-27       Impact factor: 8.140

2.  The evolution of insect germline specification strategies.

Authors:  Honghu Quan; Jeremy A Lynch
Journal:  Curr Opin Insect Sci       Date:  2016-02       Impact factor: 5.186

Review 3.  Germ Line Mechanics--And Unfinished Business.

Authors:  Gary M Wessel
Journal:  Curr Top Dev Biol       Date:  2016-01-07       Impact factor: 4.897

4.  Computational modeling offers new insight into Drosophila germ granule development.

Authors:  Michael Valentino; Bianca M Ortega; Bianca Ulrich; Dominique A Doyle; Edward D Farnum; David A Joiner; Elizabeth R Gavis; Matthew G Niepielko
Journal:  Biophys J       Date:  2022-03-12       Impact factor: 3.699

5.  Sequence-Independent Self-Assembly of Germ Granule mRNAs into Homotypic Clusters.

Authors:  Tatjana Trcek; Tyler E Douglas; Markus Grosch; Yandong Yin; Whitby V I Eagle; Elizabeth R Gavis; Hari Shroff; Eli Rothenberg; Ruth Lehmann
Journal:  Mol Cell       Date:  2020-05-27       Impact factor: 17.970

Review 6.  Germ Plasm Biogenesis--An Oskar-Centric Perspective.

Authors:  Ruth Lehmann
Journal:  Curr Top Dev Biol       Date:  2016-02-13       Impact factor: 4.897

7.  TDRD5 binds piRNA precursors and selectively enhances pachytene piRNA processing in mice.

Authors:  Deqiang Ding; Jiali Liu; Uros Midic; Yingjie Wu; Kunzhe Dong; Ashley Melnick; Keith E Latham; Chen Chen
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

Review 8.  mRNA localization in metazoans: A structural perspective.

Authors:  Daniela Lazzaretti; Fulvia Bono
Journal:  RNA Biol       Date:  2017-07-31       Impact factor: 4.652

9.  The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage.

Authors:  Mandy Jeske; Christoph W Müller; Anne Ephrussi
Journal:  Genes Dev       Date:  2017-05-23       Impact factor: 11.361

Review 10.  RNA Granules: A View from the RNA Perspective.

Authors:  Siran Tian; Harrison A Curnutte; Tatjana Trcek
Journal:  Molecules       Date:  2020-07-08       Impact factor: 4.411

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