| Literature DB >> 26323574 |
Jun Tao1, Xiao Yang1, Pengchao Li1, Jifu Wei2, Xiaheng Deng1, Yidong Cheng1, Chao Qin1, Xiaobing Ju1, Xiaoxin Meng1, Jie Li1, Min Gu1, Qiang Lu1, Changjun Yin1.
Abstract
The involvement of circulating microRNAs (miRNAs) in cancer and their potential as diagnostic and prognostic biomarkers are becoming increasingly known. However, the significance of circulating miRNAs in upper tract urothelial carcinoma (UTUC) has remained to be investigated. The present study performed a genome‑wide serum miRNA analysis using a deep sequencing platform for initial screening. Subsequently, serum samples of 46 UTUC patients and 30 cancer‑free individuals with hematuria were subjected to a quantitative reverse‑transcription polymerase chain reaction analysis. The expression of thirteen miRNAs (miR‑664a‑3p, miR‑423‑5p, miR‑431‑5p, miR‑191‑5p, miR‑92a‑3p, miR‑22‑3p, miR‑26a‑5p, miR‑33b‑3p, miR‑16‑5p, let‑7a‑5p, let‑7b‑5p, let‑7f‑5p and let‑7c) was significantly different in serum from UTUC patients compared with that in control samples. Receiver operator characteristic analysis showed that 10 miRNAs (miR‑664a‑3p, miR‑431‑5p, miR‑423‑5p, miR‑191‑5p, miR‑33b‑3p, miR‑26a‑5p, miR‑22‑3p, miR‑16‑5p, let‑7b‑5p and let‑7c) had the potential to distinguish individuals with UTUC from the controls (areas under the curve >0.8). The present study provided the first evidence for the potential use of circulating miRNAs as biomarkers for UTUC diagnosis, which remains to be verified by further studies.Entities:
Mesh:
Substances:
Year: 2015 PMID: 26323574 PMCID: PMC4626156 DOI: 10.3892/mmr.2015.4257
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Demographic and clinical features of patients with upper tract urothelial carcinoma and controls in the training and validation sets.
| Variable | Cases (n=58)
| Controls (n=42)
| P value | ||
|---|---|---|---|---|---|
| n | % | n | % | ||
| Age (years) | |||||
| <68 | 28 | 48.3 | 22 | 52.4 | 0.685 |
| ≥68 | 30 | 51.7 | 20 | 47.6 | |
| Gender | |||||
| Male | 41 | 29.3 | 30 | 71.4 | 0.936 |
| Female | 17 | 70.7 | 12 | 28.6 | |
| Tobacco smoking status | |||||
| Never | 32 | 55.2 | 26 | 61.9 | 0.501 |
| Positive | 26 | 44.8 | 16 | 38.1 | |
| Alcohol consumption status | |||||
| Never | 40 | 82.8 | 31 | 73.8 | 0.278 |
| Positive | 18 | 17.2 | 11 | 26.2 | |
| Family history of cancer | |||||
| No | 42 | 72.4 | 37 | 88.1 | 0.057 |
| Yes | 16 | 27.6 | 5 | 11.9 | |
| Tumor stage | |||||
| I | 21 | 36.2 | |||
| II | 14 | 24.1 | |||
| III | 20 | 34.5 | |||
| IV | 3 | 5.2 | |||
| Tumor grade | |||||
| PUNLMP | 1 | 1.7 | |||
| Low grade | 17 | 29.3 | |||
| High grade | 40 | 69.0 | |||
P= 0.934 according to Student's t test for age distribution between the cases and controls; two sided χ2 test for other selected variables between the cases and controls.
Includes either history of use or present use. PUNLMP, papillary urothelial neoplasia of low malignant potential.
Figure 1(A) Heat map and (B) cluster dendrogram of differentially expressed microRNAs.
Figure 2Unsupervised classification by PCA of cases and control samples. PCA was used to classify 24 samples (12 cases and 12 controls) based on the expression profile of 711 microRNAs expressed in all samples. PCA, principal component analysis; 1, controls; 2, cases.
Differentially expressed miRNAs between serum of patients with upper tract urothelial carcinoma and controls.
| miRNA name | Lowest count in all samples | Fold change (cases vs. controls) | P value | Predicted by |
|---|---|---|---|---|
| has-let-7a-5p | 88495 | 2.08 | <0.001 | PCA |
| has-let-7b-5p | 13358 | 3.18 | <0.001 | PCA |
| has-let-7c | 65799 | 2.44 | <0.001 | PCA |
| has-let-7f-5p | 85201 | 2.05 | <0.001 | PCA |
| has-miR-16-5p | 477766 | 2.43 | <0.001 | PCA |
| has-miR-183-5p | 7393 | 4.24 | <0.001 | PCA |
| has-miR-191-5p | 53946 | 2.57 | <0.001 | PCA |
| has-miR-22-3p | 64832 | 0.46 | <0.001 | PCA |
| has-miR-25-3p | 86758 | 2.78 | <0.001 | PCA |
| hsa miR 26a 5p | 14980 | 2.33 | <0.001 | PCA |
| has-miR-33b-3p | 6636 | 3.98 | <0.001 | CA |
| has-miR-3609 | 127 | 12.68 | <0.001 | CA |
| has-miR-370 | 106 | 0.39 | <0.001 | CA |
| has-miR-423-5p | 9077 | 2.48 | <0.001 | PCA |
| has-miR-431-5p | 169 | 0.23 | <0.001 | CA |
| hsa-miR-451a | 183231 | 2.18 | <0.001 | PCA |
| hsa-miR-4763-5p | 122 | 10.81 | <0.001 | CA |
| hsa-miR-486-5p | 1537466 | 2.99 | <0.001 | PCA |
| hsa-miR-655 | 148 | 5.18 | <0.001 | CA |
| hsa-miR-664a-3p | 24258 | 8.12 | <0.001 | CA |
| hsa-miR-92a-3p | 161639 | 0.46 | <0.001 | PCA |
CA, cluster analysis; PCA, principal components analysis; hsa, Homo sapiens; miR/miRNA, microRNA.
Figure 3Relative levels of 13 serum miRNAs in 46 upper tract urothelial carcinoma patients and 30 control individuals (in the validation sets; mean ± standard deviation). These levels were determined by reverse transcription quantitative polymerase chain reaction analysis. Each point represents the mean result for triplicate samples. miR/miRNA, microRNA; Ct, cycle threshold.
Figure 4Receiver operator characteristic curves reflecting the ability of the serum levels of 10 individual miRNAs to distinguish the upper tract urothelial carcinoma cases (n=46) from the controls (n=30) (AUC >80%). miR/miRNA, microRNA; AUC, area under curve; CI, confidence interval.
Diagnostic values of 13 miRNAs with regard to detection of UTUC.
| miRNA name | AUC | 95% CI | P value | Cut off value | Sensitivity | Specificity |
|---|---|---|---|---|---|---|
| hsa-let-7a-5p | 0.725 | 0.605–0.845 | 0.001 | 31.55 | 0.696 | 0.833 |
| hsa-let-7b-5p | 0.856 | 0.762–0.949 | <0.001 | 15.15 | 0.761 | 0.867 |
| hsa-let-7c | 0.905 | 0.836–0.974 | <0.001 | 1.53 | 0.739 | 0.967 |
| hsa-let-7f-5p | 0.642 | 0.516–0.768 | 0.037 | 7.06 | 0.674 | 0.700 |
| hsa-miR-16-5p | 0.821 | 0.725–0.917 | <0.001 | 290.05 | 0.739 | 0.867 |
| hsa-miR-191-5p | 0.814 | 0.712–0.917 | <0.001 | 12.92 | 0.848 | 0.800 |
| hsa-miR-22-3p | 0.836 | 0.741–0.931 | <0.001 | 21.40 | 0.870 | 0.800 |
| hsa-miR-26a-5p | 0.891 | 0.821–0.962 | <0.001 | 33.17 | 0.804 | 0.883 |
| hsa-miR-33b-3p | 0.879 | 0.801–0.958 | <0.001 | 313.26 | 0.717 | 0.967 |
| hsa-miR-423-5p | 0.802 | 0.702–0.902 | <0.001 | 30.01 | 0.674 | 0.867 |
| hsa-miR-431-5p | 0.933 | 0.879–0.988 | <0.001 | 0.83 | 0.826 | 0.933 |
| hsa-miR-664a-3p | 0.998 | 0.992–1.000 | <0.001 | 113.74 | 0.978 | 1.000 |
| hsa-miR-92a-3p | 0.675 | 0.552–0.797 | 0.010 | 338.44 | 0.587 | 0.867 |
The cut off values of serum miRNAs in UTUC patients vs. control subjects were derived from receiver operator characteristic curves with Youden's index. UTUC, upper tract urothelial carcinoma; hsa, Homo sapiens; miR/miRNA, microRNA; CI, confidence interval; AUC, area under curve.