Literature DB >> 26323296

Structure of RizA, an L-amino-acid ligase from Bacillus subtilis.

Wataru Kagawa1, Toshinobu Arai2, Shun Ishikura2, Kuniki Kino2, Hitoshi Kurumizaka3.   

Abstract

RizA is an L-amino-acid ligase from Bacillus subtilis that participates in the biosynthesis of rhizocticin, an oligopeptide antibiotic. The substrate-free form of RizA has been crystallized and the structure was solved at 2.8 Å resolution. The amino-acid-binding site appears to be capable of accommodating multiple amino acids, consistent with previous biochemical studies.

Entities:  

Keywords:  ATP-grasp fold; dipeptide synthesis; l-amino-acid ligase; rhizocticin

Mesh：

Substances：

Year:  2015        PMID： 26323296      PMCID： PMC4555917          DOI： 10.1107/S2053230X15012698

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN： 2053-230X            Impact factor:   1.056


  25 in total

1.  A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity.

Authors:  M Y Galperin; E V Koonin
Journal:  Protein Sci       Date:  1997-12       Impact factor: 6.725

Review 2.  New developments and applications of bacteriocins and peptides in foods.

Authors:  S Mills; C Stanton; C Hill; R P Ross
Journal:  Annu Rev Food Sci Technol       Date:  2011

3.  ywfE in Bacillus subtilis codes for a novel enzyme, L-amino acid ligase.

Authors:  Kazuhiko Tabata; Hajime Ikeda; Shin-Ichi Hashimoto
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

4.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

5.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Dipeptide synthesis by L-amino acid ligase from Ralstonia solanacearum.

Authors:  Kuniki Kino; Yuji Nakazawa; Makoto Yagasaki
Journal:  Biochem Biophys Res Commun       Date:  2008-04-28       Impact factor: 3.575

8.  A novel l-amino acid ligase from bacillus licheniformis.

Authors:  Kuniki Kino; Atsushi Noguchi; Yuji Nakazawa; Makoto Yagasaki
Journal:  J Biosci Bioeng       Date:  2008-09       Impact factor: 2.894

9.  1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type.

Authors:  D M LeMaster; F M Richards
Journal:  Biochemistry       Date:  1985-12-03       Impact factor: 3.162

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598
View more
  2 in total

1.  An ATP-Dependent Ligase with Substrate Flexibility Involved in Assembly of the Peptidyl Nucleoside Antibiotic Polyoxin.

Authors:  Rong Gong; Jianzhao Qi; Pan Wu; You-Sheng Cai; Hongmin Ma; Yang Liu; He Duan; Meng Wang; Zixin Deng; Neil P J Price; Wenqing Chen
Journal:  Appl Environ Microbiol       Date:  2018-06-18       Impact factor: 4.792

Review 2.  Strategy for the Biosynthesis of Short Oligopeptides: Green and Sustainable Chemistry.

Authors:  Tao Wang; Yu-Ran Zhang; Xiao-Huan Liu; Shun Ge; You-Shuang Zhu
Journal:  Biomolecules       Date:  2019-11-13
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.