Literature DB >> 26313250

Accurate (13)C and (15)N Chemical Shift and (14)N Quadrupolar Coupling Constant Calculations in Amino Acid Crystals:  Zwitterionic, Hydrogen-Bonded Systems.

Mark Strohmeier1, Dirk Stueber1, David M Grant1.   

Abstract

EIM (embedded ion method), cluster, combined EIM/cluster, and isolated molecule (13)C and (15)N chemical shielding and quadrupolar coupling constant (QCC) calculations at the B3LYP level with D95**, D95++**, 6-311G**, and 6-311+G** basis sets were done on the amino acids l-alanine, l-asparagine monohydrate, and l-histidine monohydrate monohydrochloride and on the two polymorphs α and γ glycine. The intermolecular interactions that are present in the amino acid crystals are accounted for in the EIM calculations by a finite array of point charges calculated from Ewald lattice sums and in the cluster calculations by a shell of neighboring molecules or molecular fragments. The combined EIM/cluster calculations utilize a cluster of molecules inside an EIM point charge array. The theoretical (13)C and (15)N principal shielding values for the amino acids studied are compared to the experimental principal shift values. In addition, theoretical CN bond orientations in the chemical shift principal axis system (PAS) are compared to the experimental orientations obtained from (13)C-(14)N dipolar couplings. The theoretical QCC at the nitrogen positions are compared to experimental (14)N QCC principal values reported in the literature. The carbon and nitrogen theoretical chemical shielding, the C-N orientations, and the QCCs from the ab initio calculations show improved agreement with the experimental values when the intermolecular interactions are accounted for by EIM or cluster calculations. The EIM (13)C shielding calculations are found to give better agreement with the experimental values than cluster (13)C shielding calculations. However, to achieve good agreement between the theoretical (14)N QCC and the (15)N principal shielding values with the respective experimental values, both intermolecular electrostatic and covalent interactions have to be included explicitly in the EIM/cluster calculations.

Entities:  

Year:  2003        PMID: 26313250     DOI: 10.1021/jp0350114

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Assessing the fractions of tautomeric forms of the imidazole ring of histidine in proteins as a function of pH.

Authors:  Jorge A Vila; Yelena A Arnautova; Yury Vorobjev; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-21       Impact factor: 11.205

2.  Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase.

Authors:  Jacek Lubkowski; Alexander Wlodawer
Journal:  Protein Sci       Date:  2019-08-29       Impact factor: 6.725

3.  Intermolecular shielding contributions studied by modeling the (13)C chemical-shift tensors of organic single crystals with plane waves.

Authors:  Jessica C Johnston; Robbie J Iuliucci; Julio C Facelli; George Fitzgerald; Karl T Mueller
Journal:  J Chem Phys       Date:  2009-10-14       Impact factor: 3.488

4.  Limiting values of the 15N chemical shift of the imidazole ring of histidine at high pH.

Authors:  Jorge A Vila
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

5.  Crystallographic and Dynamic Aspects of Solid-State NMR Calibration Compounds: Towards ab Initio NMR Crystallography.

Authors:  Xiaozhou Li; Lukas Tapmeyer; Michael Bolte; Jacco van de Streek
Journal:  Chemphyschem       Date:  2016-06-08       Impact factor: 3.102

  5 in total

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