Literature DB >> 26310302

Chujaibacter soli gen. nov., sp. nov., isolated from soil.

Soo-Jin Kim1, Jae-Hyung Ahn, Hang-Yeon Weon, Seung-Beom Hong, Soon-Ja Seok, Jeong-Seon Kim, Soon-Wo Kwon.   

Abstract

A Gram-staining-negative, aerobic, non-flagellated, rod-shaped bacterial strain, KIS55-21(T), was isolated from a soil sample from Chuja Island, Jeju Province, Republic of Korea. Strain KIS55-21(T) grew optimally at pH 7.0, at 28-30°C and in the presence of 0% (w/v) NaCl. Neighbor-joining and maximum-likelihood trees based on the 16S rRNA gene sequences revealed that strain KIS55-21(T) fell within the family Xanthomonadaceae and was closely related to Metallibacterium scheffleri DKE(T). Strain KIS55-21(T) exhibited the highest 16S rRNA gene sequence similarity (92.6%) to that of M. scheffleri DKE(T), with similarities of less than 92.0% to those of the genera Dokdonella, Rhodanobacter, Aquimonas, and Frateuria. Strain KIS55-21(T) contained ubiquinone-8 (Q-8) as the predominant ubiquinone, iso-C17:0, summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-methyl), anteiso-C17:0 and C16:0 as the major fatty acids, and phosphatidylethanolamine, aminophospholipid, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylmonomethylethanolamine as the main polar lipids. The DNA G+C content of strain KIS55-21(T) was 65.9 mol%. Differential phenotypic and chemotaxonomic properties and phylogenetic data of strain KIS55-21(T) demonstrated that this strain is distinguishable from closely related genera within the family Xanthomonadaceae. On the basis of the data presented, strain KIS55-21(T) is considered to represent a novel genus and species, for which the name Chujaibacter soli gen. nov., sp. nov. is proposed. The type strain is KIS55-21(T) (=KACC 16971(T) =DSM 28578(T)).

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26310302     DOI: 10.1007/s12275-015-5136-y

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  18 in total

1.  A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature.

Authors:  J M Gonzalez; C Saiz-Jimenez
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

2.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios.

Authors:  Ana Paula B Moreira; Nei Pereira; Fabiano L Thompson
Journal:  Int J Syst Evol Microbiol       Date:  2010-11-05       Impact factor: 2.747

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Dokdonella koreensis gen. nov., sp. nov., isolated from soil.

Authors:  Jung-Hoon Yoon; So-Jung Kang; Tae-Kwang Oh
Journal:  Int J Syst Evol Microbiol       Date:  2006-01       Impact factor: 2.747

7.  Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium.

Authors:  R Nalin; P Simonet; T M Vogel; P Normand
Journal:  Int J Syst Bacteriol       Date:  1999-01

8.  Rudaea cellulosilytica gen. nov., sp. nov., isolated from soil.

Authors:  Hang-Yeon Weon; Seung-Hee Yoo; Yoo-Jeong Kim; Chang-Muk Lee; Byung-Yong Kim; Young-Ah Jeon; Seung-Beom Hong; Rangasamy Anandham; Soon-Wo Kwon
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-20       Impact factor: 2.747

9.  Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm.

Authors:  Sibylle Ziegler; Barbara Waidner; Takashi Itoh; Peter Schumann; Stefan Spring; Johannes Gescher
Journal:  Int J Syst Evol Microbiol       Date:  2012-08-03       Impact factor: 2.747

10.  SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Authors:  Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner
Journal:  Bioinformatics       Date:  2012-05-03       Impact factor: 6.937

View more
  1 in total

1.  Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory.

Authors:  Lingmin Jiang; Dexin Wang; Jung-Sook Lee; Dae-Hyuk Kim; Jae Cheol Jeong; Cha Young Kim; Suk Weon Kim; Jiyoung Lee
Journal:  J Microbiol       Date:  2020-03-27       Impact factor: 3.422

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.