| Literature DB >> 26307405 |
Jessica V Bryant1,2, Valérie A Olson3, Helen J Chatterjee4, Samuel T Turvey5.
Abstract
BACKGROUND: For conservation of highly threatened species to be effective, it is crucial to differentiate natural population parameters from atypical behavioural, ecological and demographic characteristics associated with human disturbance and habitat degradation, which can constrain population growth and recovery. Unfortunately, these parameters can be very hard to determine for species of extreme rarity. The Hainan gibbon (Nomascus hainanus), the world's rarest ape, consists of a single population of c.25 individuals, but intensive management is constrained by a limited understanding of the species' expected population characteristics and environmental requirements. In order to generate a more robust evidence-base for Hainan gibbon conservation, we employed a comparative approach to identify intrinsic and extrinsic drivers of variation in key ecological and behavioural traits (home range size, social group size, mating system) across the Hylobatidae while controlling for phylogenetic non-independence.Entities:
Mesh:
Year: 2015 PMID: 26307405 PMCID: PMC4549120 DOI: 10.1186/s12862-015-0430-1
Source DB: PubMed Journal: BMC Evol Biol ISSN: 1471-2148 Impact factor: 3.260
Potential predictor variables of home range, group size and mating system in gibbons: potential intrinsic and extrinsic predictor variables (fixed effects) hypothesised to influence response traits and tested in predictive models, with data scale and source(s)
| Potential predictor variable | Scale | Source(s) |
|---|---|---|
| Adult body mass (kg) | Species mean | [ |
| Group density (mean number of groups/km2) | Mean at site | Details in Additional file |
| Latitude (decimal degrees) | Exact value for site | Details in Additional file |
| Longitude (decimal degrees) | Exact value for site | Details in Additional file |
| Altitude (metres asl) | Mean for site across years, 1 km resolution | [ |
| Annual mean temperature (°C) | Mean for site across years, 1 km resolution | |
| Annual precipitation (mm) | Mean for site across years, 1 km resolution | |
| Precipitation seasonality (coefficient of variation) | Mean for site across years, 1 km resolution | |
| Normalized difference vegetation index (NDVI; ratio) | Mean for site across years, 8 km resolution | [ |
| Global Human Footprint (GHF; %) | Mean for site across years, 1 km resolution | [ |
| Reserve area (km2) | Value for reserve | Details in Additional file |
Fig. 1Reconstructed hylobatid phylogenetic tree (with outgroup): phylogenetic tree of the Hylobatidae plus Pongo outgroup (indicated by hollow circles) used for tests of phylogenetic signal and predictive modelling, with mean divergence times (in mya) indicated at nodes; after [47] and Christian Roos (pers. comm., September 2013)
Trait phylogenetic signals: results of tests for phylogenetic signal in two continuous traits of interest (home range and group size) and one control variable (body mass) using Pagel’s λ under maximum likelihood (ML-λ) and tests against models of no signal (0) or complete phylogenetic dependence (1)
| Variable | ML-λ | Test |
|
|
|---|---|---|---|---|
| Body mass | 0.9999 | λ = 0 | 45.38 | <0.0001 |
| λ = 1 | −0.01 | 1.0 | ||
| Home range | 0.9999 | λ = 0 | 30.32 | <0.0001 |
| λ = 1 | −0.004 | 1.0 | ||
| Group size | 0.9731 | λ = 0 | 20.61 | <0.0001 |
| λ = 1 | 0.58 | 0.45 |
Best-approximating home range and group size predictive models: fixed effects parameter estimates from best-approximating linear mixed-effects kinship models incorporating phylogenetic and within-species variance-covariance fit by maximum likelihood for: a) HR (residual error = 0.113) and b) GS (residual error: 0.045). Model fitting incorporates both fixed and random effects in parameter estimates
| Coefficient | Estimate | SE | z-value |
|
|---|---|---|---|---|
|
| ||||
| (Intercept) | 1.03 | 0.22 | 4.66 |
|
| Group density | −0.14 | 0.04 | −3.19 |
|
| Mating system (1 = polygyny) | 0.30 | 0.11 | 2.58 |
|
| Group size | 0.99 | 0.40 | 2.49 |
|
|
| ||||
| (Intercept) | 0.98 | 0.18 | 5.55 |
|
| Mating system (1 = polygyny) | 0.22 | 0.03 | 6.85 |
|
| Annual precipitation | −0.16 | 0.06 | −2.96 |
|
| Annual mean temperature | 0.005 | 0.003 | 1.59 | 0.110 |
P-values <0.05 are shown in bold
Model-averaged home range and group size predictive models: model-averaged fixed effects parameter estimates for: a) HR (from n = 19 model set with ΔAICc < 7 and cumulative w >0.95), and b) GS (from n = 10 model set with ΔAICc < 7 and cumulative w >0.95), with relative importance (RI) of each parameter
| Coefficient | Averaged estimate (β) | SE | z-value |
| RI |
|---|---|---|---|---|---|
|
| |||||
| (Intercept) | 1.35 | 0.58 | 2.33 |
| NA |
| Group density | −0.13 | 0.05 | 2.58 |
| 0.70 |
| Group size | 1.22 | 0.50 | 2.44 |
| 0.84 |
| Mating system (1 = polygyny) | 0.33 | 0.15 | 2.22 |
| 0.83 |
| Annual mean temperature | −0.02 | 0.01 | 1.51 | 0.132 | 0.43 |
| Annual precipitation | −0.19 | 0.17 | 1.08 | 0.282 | 0.26 |
|
| |||||
| (Intercept) | 0.94 | 0.23 | 4.03 |
| NA |
| Mating system (1 = polygyny) | 0.21 | 0.03 | 6.29 |
| 1.00 |
| Aannual precipitation | −0.15 | 0.06 | 2.63 |
| 0.87 |
| Annual mean temperature | 0.005 | 0.003 | 1.43 | 0.153 | 0.39 |
| Latitude | −0.001 | 0.001 | 0.48 | 0.634 | 0.22 |
P-values <0.05 are shown in bold
Fig. 2Assessment of model fit for best-approximating home range and group size predictive models: scatterplots of model fit: (a) observed HR values (log-transformed) versus values predicted under best-approximating linear mixed-effects kinship model for HR (log values); (b) observed GS values (log-transformed) versus values predicted under best-approximating linear mixed-effects kinship model for GS (log values); (c) HR values predicted under best-approximating linear mixed-effects kinship model for HR (log values) versus model residuals; (d) GS values predicted under best-approximating linear mixed-effects kinship model for GS (log values) versus model residuals
Global mating system predictive model: exploratory global multiple regression model for MS; linear mixed-effects kinship model incorporating phylogenetic and within-species variance-covariance fit by maximum likelihood (residual error: 0.129), with all possible putative fixed effect predictors
| Coefficient | Estimate | SE | z-value |
|
|---|---|---|---|---|
| (Intercept) | 0.34 | 0.16 | 2.07 |
|
| Group size | 1.36 | 0.50 | 1.86 | 0.063 |
| Home range | 0.50 | 0.23 | 1.82 | 0.069 |
| NDVI | −0.59 | 0.30 | −1.79 | 0.073 |
| Altitude | 0.16 | 0.10 | 1.72 | 0.085 |
| Reserve area | −0.06 | 0.03 | −1.66 | 0.097 |
| Species adult body mass | 0.45 | 0.33 | 1.38 | 0.170 |
| GHF | −0.32 | 0.31 | −1.03 | 0.310 |
| Annual precipitation | −0.18 | 0.24 | −0.73 | 0.460 |
| Precipitation seasonality | −0.27 | 0.37 | −0.74 | 0.460 |
| Latitude | 0.00 | 0.01 | 0.37 | 0.710 |
| Longitude | 0.00 | 0.01 | 0.28 | 0.780 |
| Annual mean temperature | 0.01 | 0.03 | 0.24 | 0.810 |
| Group density | 0.02 | 0.08 | 0.22 | 0.830 |
P-values <0.05 are in bold
Fig. 3Detected drivers of home range, group size and mating system in gibbons: relationship between response variables investigated showing inter-connectivity of HR, GS and MS as both drivers and responses, along with two site-level extrinsic drivers