Literature DB >> 26306037

Structural Basis for Ca2+-mediated Interaction of the Perforin C2 Domain with Lipid Membranes.

Hiromasa Yagi1, Paul J Conroy2, Eleanor W W Leung1, Ruby H P Law2, Joseph A Trapani3, Ilia Voskoboinik4, James C Whisstock5, Raymond S Norton6.   

Abstract

Natural killer cells and cytotoxic T-lymphocytes deploy perforin and granzymes to kill infected host cells. Perforin, secreted by immune cells, binds target membranes to form pores that deliver pro-apoptotic granzymes into the target cell. A crucial first step in this process is interaction of its C2 domain with target cell membranes, which is a calcium-dependent event. Some aspects of this process are understood, but many molecular details remain unclear. To address this, we investigated the mechanism of Ca(2+) and lipid binding to the C2 domain by NMR spectroscopy and x-ray crystallography. Calcium titrations, together with dodecylphosphocholine micelle experiments, confirmed that multiple Ca(2+) ions bind within the calcium-binding regions, activating perforin with respect to membrane binding. We have also determined the affinities of several of these binding sites and have shown that this interaction causes a significant structural rearrangement in CBR1. Thus, it is proposed that Ca(2+) binding at the weakest affinity site triggers changes in the C2 domain that facilitate its interaction with lipid membranes.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  NMR; calcium-binding protein; crystal structure; immunology; multisite ligand binding; protein-membrane interaction; x-ray crystallography

Mesh:

Substances:

Year:  2015        PMID: 26306037      PMCID: PMC4646173          DOI: 10.1074/jbc.M115.668384

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  39 in total

1.  Ca2+ binding to synaptotagmin: how many Ca2+ ions bind to the tip of a C2-domain?

Authors:  J Ubach; X Zhang; X Shao; T C Südhof; J Rizo
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

2.  Solution structures of the Ca2+-free and Ca2+-bound C2A domain of synaptotagmin I: does Ca2+ induce a conformational change?

Authors:  X Shao; I Fernandez; T C Südhof; J Rizo
Journal:  Biochemistry       Date:  1998-11-17       Impact factor: 3.162

Review 3.  Perforin and granzymes: function, dysfunction and human pathology.

Authors:  Ilia Voskoboinik; James C Whisstock; Joseph A Trapani
Journal:  Nat Rev Immunol       Date:  2015-06       Impact factor: 53.106

4.  A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1.

Authors:  L O Essen; O Perisic; D E Lynch; M Katan; R L Williams
Journal:  Biochemistry       Date:  1997-03-11       Impact factor: 3.162

5.  Calcium-dependent plasma membrane binding and cell lysis by perforin are mediated through its C2 domain: A critical role for aspartate residues 429, 435, 483, and 485 but not 491.

Authors:  Ilia Voskoboinik; Marie-Claude Thia; Jamie Fletcher; Annette Ciccone; Kylie Browne; Mark J Smyth; Joseph A Trapani
Journal:  J Biol Chem       Date:  2004-12-02       Impact factor: 5.157

6.  Structure of the first C2 domain of synaptotagmin I: a novel Ca2+/phospholipid-binding fold.

Authors:  R B Sutton; B A Davletov; A M Berghuis; T C Südhof; S R Sprang
Journal:  Cell       Date:  1995-03-24       Impact factor: 41.582

7.  Human phosphoinositide 3-kinase C2beta, the role of calcium and the C2 domain in enzyme activity.

Authors:  A Arcaro; S Volinia; M J Zvelebil; R Stein; S J Watton; M J Layton; I Gout; K Ahmadi; J Downward; M D Waterfield
Journal:  J Biol Chem       Date:  1998-12-04       Impact factor: 5.157

8.  Structure of the protein kinase Cbeta phospholipid-binding C2 domain complexed with Ca2+.

Authors:  R B Sutton; S R Sprang
Journal:  Structure       Date:  1998-11-15       Impact factor: 5.006

9.  The role of C2 domains in Ca2+-activated and Ca2+-independent protein kinase Cs in aplysia.

Authors:  A M Pepio; X Fan; W S Sossin
Journal:  J Biol Chem       Date:  1998-07-24       Impact factor: 5.157

10.  Crystal structure of a calcium-phospholipid binding domain from cytosolic phospholipase A2.

Authors:  O Perisic; S Fong; D E Lynch; M Bycroft; R L Williams
Journal:  J Biol Chem       Date:  1998-01-16       Impact factor: 5.157

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  11 in total

1.  Knocking 'em Dead: Pore-Forming Proteins in Immune Defense.

Authors:  Xing Liu; Judy Lieberman
Journal:  Annu Rev Immunol       Date:  2020-01-31       Impact factor: 28.527

2.  Perforin proteostasis is regulated through its C2 domain: supra-physiological cell death mediated by T431D-perforin.

Authors:  Amelia J Brennan; Ruby H P Law; Paul J Conroy; Tahereh Noori; Natalya Lukoyanova; Helen Saibil; Hideo Yagita; Annette Ciccone; Sandra Verschoor; James C Whisstock; Joseph A Trapani; Ilia Voskoboinik
Journal:  Cell Death Differ       Date:  2018-02-07       Impact factor: 15.828

3.  The Effects of Ca2+ Concentration and E200K Mutation on the Aggregation Propensity of PrPC: A Computational Study.

Authors:  Alessandro Marrone; Nazzareno Re; Loriano Storchi
Journal:  PLoS One       Date:  2016-12-13       Impact factor: 3.240

4.  The C2 domain of calpain 5 contributes to enzyme activation and membrane localization.

Authors:  Vimala Bondada; Jozsef Gal; Charles Mashburn; David W Rodgers; Katherine E Larochelle; Dorothy E Croall; James W Geddes
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2021-03-31       Impact factor: 5.011

5.  Structural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands.

Authors:  Richard J Suckling; Boguslawa Korona; Pat Whiteman; Chandramouli Chillakuri; Laurie Holt; Penny A Handford; Susan M Lea
Journal:  EMBO J       Date:  2017-06-01       Impact factor: 11.598

6.  Benzenesulphonamide inhibitors of the cytolytic protein perforin.

Authors:  Julie A Spicer; Christian K Miller; Patrick D O'Connor; Jiney Jose; Kristiina M Huttunen; Jagdish K Jaiswal; William A Denny; Hedieh Akhlaghi; Kylie A Browne; Joseph A Trapani
Journal:  Bioorg Med Chem Lett       Date:  2016-12-23       Impact factor: 2.823

7.  IL-2 augments the therapeutic efficacy of adoptively transferred B cells which directly kill tumor cells via the CXCR4/CXCL12 and perforin pathways.

Authors:  Yang Xia; Huimin Tao; Yangyang Hu; Quanning Chen; Xin Chen; Leiming Xia; Li Zhou; Yi Wang; Yangyi Bao; Shiang Huang; Xiubao Ren; Steven K Lundy; Fu Dai; Qiao Li; Alfred E Chang
Journal:  Oncotarget       Date:  2016-09-13

Review 8.  Ancient but Not Forgotten: New Insights Into MPEG1, a Macrophage Perforin-Like Immune Effector.

Authors:  Charles Bayly-Jones; Siew Siew Pang; Bradley A Spicer; James C Whisstock; Michelle A Dunstone
Journal:  Front Immunol       Date:  2020-10-15       Impact factor: 7.561

9.  Lipid specificity of the immune effector perforin.

Authors:  Adrian W Hodel; Jesse A Rudd-Schmidt; Joseph A Trapani; Ilia Voskoboinik; Bart W Hoogenboom
Journal:  Faraday Discuss       Date:  2021-12-24       Impact factor: 4.008

10.  Antigen-specific CD8+ T cell feedback activates NLRP3 inflammasome in antigen-presenting cells through perforin.

Authors:  Yikun Yao; Siyuan Chen; Mengtao Cao; Xing Fan; Tao Yang; Yin Huang; Xinyang Song; Yongqin Li; Lilin Ye; Nan Shen; Yufang Shi; Xiaoxia Li; Feng Wang; Youcun Qian
Journal:  Nat Commun       Date:  2017-05-24       Impact factor: 17.694

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